RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 A0A0D9SFI3 127 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 VPS37CA5D8V6 355 aaPredicted RBP8.99□□□□□ -0.97
LIMA1-213ENST00000552720 GRM8O00222 908 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 CHGBP05060 677 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 PTMAP06454 111 aaKnown RBP8.99□□□□□ -0.97
LIMA1-213ENST00000552720 FAM173BQ6P4H8 233 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 GIMAP6Q6P9H5 292 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 ARHGEF25Q86VW2 580 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 KCNH5Q8NCM2 988 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 BOLA2Q9H3K6 86 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 ZSWIM6Q9HCJ5 1215 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 CCDC39Q9UFE4 941 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 TPCN1Q9ULQ1 816 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.99□□□□□ -0.97
LIMA1-213ENST00000552720 AFDNP55196 1824 aaKnown RBP8.99□□□□□ -0.97
LIMA1-213ENST00000552720 HEG1Q9ULI3 1381 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 RRP9O43818 475 aaKnown RBP8.99□□□□□ -0.97
LIMA1-213ENST00000552720 ALDH1L1O75891 902 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 IGKV5-2P06315 115 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 MYL6BP14649 208 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 PDIA6Q15084 440 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 EPHA10Q5JZY3 1008 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 FERMT3Q86UX7 667 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 CYP46A1Q9Y6A2 500 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 NDUFB9Q9Y6M9 179 aa8.99□□□□□ -0.97
LIMA1-213ENST00000552720 KCNJ4P48050 445 aa8.98□□□□□ -0.97
LIMA1-213ENST00000552720 CCDC183Q5T5S1 534 aa8.98□□□□□ -0.97
LIMA1-213ENST00000552720 VPS53Q5VIR6 699 aa8.98□□□□□ -0.97
LIMA1-213ENST00000552720 CREB3L3Q68CJ9 461 aa8.98□□□□□ -0.97
LIMA1-213ENST00000552720 RUFY2Q8WXA3 655 aa8.98□□□□□ -0.97
LIMA1-213ENST00000552720 EVI5LQ96CN4 794 aa8.98□□□□□ -0.97
LIMA1-213ENST00000552720 CHMP3Q9Y3E7 222 aa8.98□□□□□ -0.97
LIMA1-213ENST00000552720 SCN11AQ9UI33 1791 aa8.98□□□□□ -0.97
LIMA1-213ENST00000552720 UBE2HP62256 183 aa8.98□□□□□ -0.97
LIMA1-213ENST00000552720 AMOTQ4VCS5 1084 aa8.98□□□□□ -0.97
LIMA1-213ENST00000552720 C17orf53Q8N3J3 647 aaPredicted RBP8.98□□□□□ -0.97
LIMA1-213ENST00000552720 LINS1Q8NG48 757 aa8.98□□□□□ -0.97
LIMA1-213ENST00000552720 ADGRL3Q9HAR2 1447 aa8.98□□□□□ -0.97
LIMA1-213ENST00000552720 SLC27A2O14975 620 aa8.97□□□□□ -0.97
LIMA1-213ENST00000552720 PHF14O94880 888 aa8.97□□□□□ -0.97
LIMA1-213ENST00000552720 G3BP1Q13283 466 aaKnown RBP eCLIP8.97□□□□□ -0.97
LIMA1-213ENST00000552720 ZNF589Q86UQ0 364 aaPredicted RBP8.97□□□□□ -0.97
LIMA1-213ENST00000552720 GPATCH3Q96I76 525 aa8.97□□□□□ -0.97
LIMA1-213ENST00000552720 NPHP4O75161 1426 aaPredicted RBP8.97□□□□□ -0.97
LIMA1-213ENST00000552720 UQCRHLA0A096LP55 91 aa8.97□□□□□ -0.97
LIMA1-213ENST00000552720 AP5Z1O43299 807 aa8.97□□□□□ -0.97
LIMA1-213ENST00000552720 ADCY5O95622 1261 aa8.97□□□□□ -0.97
LIMA1-213ENST00000552720 UQCRHP07919 91 aa8.97□□□□□ -0.97
LIMA1-213ENST00000552720 VASPP50552 380 aaPredicted RBP8.97□□□□□ -0.97
LIMA1-213ENST00000552720 ZC3H6P61129 1189 aaKnown RBP8.97□□□□□ -0.97
LIMA1-213ENST00000552720 CDC37L1Q7L3B6 337 aa8.97□□□□□ -0.97
LIMA1-213ENST00000552720 RIC3Q7Z5B4 369 aa8.97□□□□□ -0.97
LIMA1-213ENST00000552720 ANKLE2Q86XL3 938 aa8.97□□□□□ -0.97
LIMA1-213ENST00000552720 ERC1Q8IUD2 1116 aa8.97□□□□□ -0.97
LIMA1-213ENST00000552720 MAP4K1Q92918 833 aa8.97□□□□□ -0.97
LIMA1-213ENST00000552720 KCNB2Q92953 911 aa8.97□□□□□ -0.97
LIMA1-213ENST00000552720 FSD1Q9BTV5 496 aa8.97□□□□□ -0.97
LIMA1-213ENST00000552720 TTC12Q9H892 705 aaPredicted RBP8.97□□□□□ -0.97
LIMA1-213ENST00000552720 CAMTA1Q9Y6Y1 1673 aa8.97□□□□□ -0.97
LIMA1-213ENST00000552720 LAMA4Q16363 1823 aa8.97□□□□□ -0.97
LIMA1-213ENST00000552720 NCAPD2Q15021 1401 aa8.96□□□□□ -0.97
LIMA1-213ENST00000552720 STK3Q13188 491 aa8.96□□□□□ -0.97
LIMA1-213ENST00000552720 FUCA2Q9BTY2 467 aa8.96□□□□□ -0.97
LIMA1-213ENST00000552720 DDX21Q9NR30 783 aaKnown RBP eCLIP8.96□□□□□ -0.97
LIMA1-213ENST00000552720 TRPM3Q9HCF6 1732 aaPredicted RBP8.96□□□□□ -0.97
LIMA1-213ENST00000552720 SLIT3O75094 1523 aa8.96□□□□□ -0.97
LIMA1-213ENST00000552720 ADAMTS7Q9UKP4 1686 aa8.96□□□□□ -0.98
LIMA1-213ENST00000552720 ZKSCAN1P17029 563 aaPredicted RBP8.96□□□□□ -0.98
LIMA1-213ENST00000552720 TTC6Q86TZ1 520 aa8.96□□□□□ -0.98
LIMA1-213ENST00000552720 NFATC2IPQ8NCF5 419 aa8.96□□□□□ -0.98
LIMA1-213ENST00000552720 MYD88Q99836 296 aa8.96□□□□□ -0.98
LIMA1-213ENST00000552720 TM6SF1Q9BZW5 370 aa8.96□□□□□ -0.98
LIMA1-213ENST00000552720 COL15A1P39059 1388 aa8.96□□□□□ -0.98
LIMA1-213ENST00000552720 NEURL1BA8MQ27 555 aa8.95□□□□□ -0.98
LIMA1-213ENST00000552720 LARP1BQ659C4 914 aaKnown RBP8.95□□□□□ -0.98
LIMA1-213ENST00000552720 COPS6Q7L5N1 327 aa8.95□□□□□ -0.98
LIMA1-213ENST00000552720 XAGE3Q8WTP9 111 aa8.95□□□□□ -0.98
LIMA1-213ENST00000552720 CHMP4AQ9BY43 222 aa8.95□□□□□ -0.98
LIMA1-213ENST00000552720 FAM13BQ9NYF5 915 aa8.95□□□□□ -0.98
LIMA1-213ENST00000552720 UTYO14607 1347 aa8.95□□□□□ -0.98
LIMA1-213ENST00000552720 KDM6AO15550 1401 aaPredicted RBP8.95□□□□□ -0.98
LIMA1-213ENST00000552720 MCM5P33992 734 aa8.95□□□□□ -0.98
LIMA1-213ENST00000552720 ZNF790Q6PG37 636 aa8.95□□□□□ -0.98
LIMA1-213ENST00000552720 CCDC129Q6ZRS4 1044 aa8.95□□□□□ -0.98
LIMA1-213ENST00000552720 DDX17Q92841 729 aaKnown RBP8.95□□□□□ -0.98
LIMA1-213ENST00000552720 ZSCAN31Q96LW9 406 aaPredicted RBP8.95□□□□□ -0.98
LIMA1-213ENST00000552720 SEC62Q99442 399 aaKnown RBP8.95□□□□□ -0.98
LIMA1-213ENST00000552720 SH2B1Q9NRF2 756 aaPredicted RBP8.95□□□□□ -0.98
LIMA1-213ENST00000552720 CCDC9Q9Y3X0 531 aaKnown RBP8.95□□□□□ -0.98
LIMA1-213ENST00000552720 ARFGEF2Q9Y6D5 1785 aa8.94□□□□□ -0.98
LIMA1-213ENST00000552720 DDX58O95786 925 aaKnown RBP8.94□□□□□ -0.98
LIMA1-213ENST00000552720 LIG1P18858 919 aa8.94□□□□□ -0.98
LIMA1-213ENST00000552720 TOB2Q14106 344 aaPredicted RBP8.94□□□□□ -0.98
LIMA1-213ENST00000552720 GCKRQ14397 625 aa8.94□□□□□ -0.98
LIMA1-213ENST00000552720 CAMK4Q16566 473 aa8.94□□□□□ -0.98
LIMA1-213ENST00000552720 FAM184AQ8NB25 1140 aa8.94□□□□□ -0.98
LIMA1-213ENST00000552720 ZNF496Q96IT1 587 aaPredicted RBP8.94□□□□□ -0.98
LIMA1-213ENST00000552720 ARID3AQ99856 593 aa8.94□□□□□ -0.98
LIMA1-213ENST00000552720 ATP6V1DQ9Y5K8 247 aa8.94□□□□□ -0.98
LIMA1-213ENST00000552720 USP16Q9Y5T5 823 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms