RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 L3MBTL2Q969R5 705 aa4.62□□□□□ -1.67
LIMA1-209ENST00000552008 CEP63Q96MT8 703 aa4.62□□□□□ -1.67
LIMA1-209ENST00000552008 FAM117AQ9C073 453 aa4.62□□□□□ -1.67
LIMA1-209ENST00000552008 RAXQ9Y2V3 346 aa4.62□□□□□ -1.67
LIMA1-209ENST00000552008 POU5F2Q8N7G0 328 aa4.61□□□□□ -1.67
LIMA1-209ENST00000552008 RHPN1Q8TCX5 695 aa4.61□□□□□ -1.67
LIMA1-209ENST00000552008 C7orf43Q8WVR3 580 aa4.61□□□□□ -1.67
LIMA1-209ENST00000552008 DNAJB12Q9NXW2 375 aaKnown RBP4.61□□□□□ -1.67
LIMA1-209ENST00000552008 ALX3O95076 343 aa4.6□□□□□ -1.67
LIMA1-209ENST00000552008 NOS2P35228 1153 aa4.6□□□□□ -1.67
LIMA1-209ENST00000552008 BRPF1P55201 1214 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-209ENST00000552008 TEAD4Q15561 434 aa4.6□□□□□ -1.67
LIMA1-209ENST00000552008 DTX1Q86Y01 620 aa4.6□□□□□ -1.67
LIMA1-209ENST00000552008 WFDC8Q8IUA0 241 aa4.6□□□□□ -1.67
LIMA1-209ENST00000552008 ZDHHC13Q8IUH4 622 aa4.6□□□□□ -1.67
LIMA1-209ENST00000552008 CCER1Q8TC90 406 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-209ENST00000552008 CHIC2Q9UKJ5 165 aa4.6□□□□□ -1.67
LIMA1-209ENST00000552008 NDUFB9Q9Y6M9 179 aa4.6□□□□□ -1.67
LIMA1-209ENST00000552008 DEAF1O75398 565 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-209ENST00000552008 TYRO3Q06418 890 aa4.59□□□□□ -1.67
LIMA1-209ENST00000552008 GRIK5Q16478 980 aa4.59□□□□□ -1.67
LIMA1-209ENST00000552008 FBLN7Q53RD9 439 aa4.59□□□□□ -1.67
LIMA1-209ENST00000552008 SCHIP1Q9P0W5 487 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-209ENST00000552008 STOML1Q9UBI4 398 aa4.59□□□□□ -1.67
LIMA1-209ENST00000552008 ZNF232Q9UNY5 417 aa4.59□□□□□ -1.67
LIMA1-209ENST00000552008 SFI1A8K8P3 1242 aa4.58□□□□□ -1.68
LIMA1-209ENST00000552008 F8W735 103 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-209ENST00000552008 DLL1O00548 723 aa4.58□□□□□ -1.68
LIMA1-209ENST00000552008 TMEM130Q8N3G9 435 aa4.58□□□□□ -1.68
LIMA1-209ENST00000552008 HSH2DQ96JZ2 352 aa4.58□□□□□ -1.68
LIMA1-209ENST00000552008 MRPL18Q9H0U6 180 aaKnown RBP4.58□□□□□ -1.68
LIMA1-209ENST00000552008 KDM4CQ9H3R0 1056 aa4.58□□□□□ -1.68
LIMA1-209ENST00000552008 ANKIB1Q9P2G1 1089 aa4.58□□□□□ -1.68
LIMA1-209ENST00000552008 BACH1O14867 736 aa4.57□□□□□ -1.68
LIMA1-209ENST00000552008 EIF4G2P78344 907 aaKnown RBP eCLIP4.57□□□□□ -1.68
LIMA1-209ENST00000552008 FAM35AQ86V20 835 aa4.57□□□□□ -1.68
LIMA1-209ENST00000552008 ASIC4Q96FT7 647 aa4.57□□□□□ -1.68
LIMA1-209ENST00000552008 EFCC1Q9HA90 598 aa4.57□□□□□ -1.68
LIMA1-209ENST00000552008 GTF3C3Q9Y5Q9 886 aa4.57□□□□□ -1.68
LIMA1-209ENST00000552008 CPB1P15086 417 aa4.56□□□□□ -1.68
LIMA1-209ENST00000552008 GLB1P16278 677 aa4.56□□□□□ -1.68
LIMA1-209ENST00000552008 NFIAQ12857 509 aa4.56□□□□□ -1.68
LIMA1-209ENST00000552008 MAP7D1Q3KQU3 841 aa4.56□□□□□ -1.68
LIMA1-209ENST00000552008 SH3PXD2AQ5TCZ1 1133 aa4.56□□□□□ -1.68
LIMA1-209ENST00000552008 Q6ZS46 218 aa4.56□□□□□ -1.68
LIMA1-209ENST00000552008 ABI1Q8IZP0 508 aa4.56□□□□□ -1.68
LIMA1-209ENST00000552008 PNMA5Q96PV4 448 aa4.56□□□□□ -1.68
LIMA1-209ENST00000552008 LPIN3Q9BQK8 851 aa4.56□□□□□ -1.68
LIMA1-209ENST00000552008 GPBP1L1Q9HC44 474 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-209ENST00000552008 FRRS1LQ9P0K9 344 aa4.56□□□□□ -1.68
LIMA1-209ENST00000552008 SERTM1A2A2V5 107 aa4.55□□□□□ -1.68
LIMA1-209ENST00000552008 PRR19A6NJB7 356 aa4.55□□□□□ -1.68
LIMA1-209ENST00000552008 DHX15O43143 795 aaKnown RBP4.55□□□□□ -1.68
LIMA1-209ENST00000552008 PLAURQ03405 335 aa4.55□□□□□ -1.68
LIMA1-209ENST00000552008 TBCELQ5QJ74 424 aa4.55□□□□□ -1.68
LIMA1-209ENST00000552008 KRTAP5-3Q6L8H2 238 aa4.55□□□□□ -1.68
LIMA1-209ENST00000552008 SLC9A9Q8IVB4 645 aa4.55□□□□□ -1.68
LIMA1-209ENST00000552008 ZNF280CQ8ND82 737 aa4.55□□□□□ -1.68
LIMA1-209ENST00000552008 PCMTD1Q96MG8 357 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-209ENST00000552008 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-209ENST00000552008 NFKB1P19838 968 aa4.54□□□□□ -1.68
LIMA1-209ENST00000552008 PCSK7Q16549 785 aa4.54□□□□□ -1.68
LIMA1-209ENST00000552008 PERM1Q5SV97 790 aa4.54□□□□□ -1.68
LIMA1-209ENST00000552008 LCE5AQ5TCM9 118 aa4.54□□□□□ -1.68
LIMA1-209ENST00000552008 C1orf53Q5VUE5 145 aa4.54□□□□□ -1.68
LIMA1-209ENST00000552008 ELMSAN1Q6PJG2 1045 aa4.54□□□□□ -1.68
LIMA1-209ENST00000552008 SPOCD1Q6ZMY3 1216 aa4.54□□□□□ -1.68
LIMA1-209ENST00000552008 AGGF1Q8N302 714 aaeCLIP4.54□□□□□ -1.68
LIMA1-209ENST00000552008 PLPP7Q8NBV4 271 aa4.54□□□□□ -1.68
LIMA1-209ENST00000552008 IL27Q8NEV9 243 aa4.54□□□□□ -1.68
LIMA1-209ENST00000552008 SUSD3Q96L08 255 aa4.54□□□□□ -1.68
LIMA1-209ENST00000552008 KRTAP9-7A8MTY7 169 aa4.53□□□□□ -1.68
LIMA1-209ENST00000552008 MTMR14Q8NCE2 650 aa4.53□□□□□ -1.68
LIMA1-209ENST00000552008 TTC9Q92623 222 aa4.53□□□□□ -1.68
LIMA1-209ENST00000552008 UBL7Q96S82 380 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-209ENST00000552008 DBNDD2Q9BQY9 259 aa4.53□□□□□ -1.68
LIMA1-209ENST00000552008 GSX2Q9BZM3 304 aa4.53□□□□□ -1.68
LIMA1-209ENST00000552008 ZNF358Q9NW07 568 aa4.53□□□□□ -1.68
LIMA1-209ENST00000552008 PCDHGA11Q9Y5H2 935 aa4.53□□□□□ -1.68
LIMA1-209ENST00000552008 APBB1O00213 710 aa4.52□□□□□ -1.69
LIMA1-209ENST00000552008 EPHA4P54764 986 aa4.52□□□□□ -1.69
LIMA1-209ENST00000552008 RNF43Q68DV7 783 aa4.52□□□□□ -1.69
LIMA1-209ENST00000552008 ERICH6Q7L0X2 663 aa4.52□□□□□ -1.69
LIMA1-209ENST00000552008 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.52□□□□□ -1.69
LIMA1-209ENST00000552008 PHACTR1Q9C0D0 580 aa4.52□□□□□ -1.69
LIMA1-209ENST00000552008 C7orf69Q9H7B7 122 aa4.52□□□□□ -1.69
LIMA1-209ENST00000552008 CCINQ13939 588 aa4.51□□□□□ -1.69
LIMA1-209ENST00000552008 BTLAQ7Z6A9 289 aa4.51□□□□□ -1.69
LIMA1-209ENST00000552008 TRIM42Q8IWZ5 723 aa4.51□□□□□ -1.69
LIMA1-209ENST00000552008 ARMC10Q8N2F6 343 aa4.51□□□□□ -1.69
LIMA1-209ENST00000552008 ANGEL1Q9UNK9 670 aaKnown RBP4.51□□□□□ -1.69
LIMA1-209ENST00000552008 HCN4Q9Y3Q4 1203 aa4.51□□□□□ -1.69
LIMA1-209ENST00000552008 HMX2A2RU54 273 aa4.5□□□□□ -1.69
LIMA1-209ENST00000552008 DBX1A6NMT0 343 aa4.5□□□□□ -1.69
LIMA1-209ENST00000552008 JUNBP17275 347 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-209ENST00000552008 ITGB5P18084 799 aa4.5□□□□□ -1.69
LIMA1-209ENST00000552008 CBLL1Q75N03 491 aa4.5□□□□□ -1.69
LIMA1-209ENST00000552008 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.5□□□□□ -1.69
LIMA1-209ENST00000552008 TNS4Q8IZW8 715 aa4.5□□□□□ -1.69
LIMA1-209ENST00000552008 BANK1Q8NDB2 785 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms