RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 GPR37L1O60883 481 aa4.23□□□□□ -1.73
LIMA1-207ENST00000551486 NOS3P29474 1203 aa4.23□□□□□ -1.73
LIMA1-207ENST00000551486 SEMA3FQ13275 785 aa4.23□□□□□ -1.73
LIMA1-207ENST00000551486 EML3Q32P44 896 aa4.23□□□□□ -1.73
LIMA1-207ENST00000551486 C1orf53Q5VUE5 145 aa4.23□□□□□ -1.73
LIMA1-207ENST00000551486 MSL1Q68DK7 614 aa4.23□□□□□ -1.73
LIMA1-207ENST00000551486 KRTAP9-8Q9BYQ0 159 aa4.23□□□□□ -1.73
LIMA1-207ENST00000551486 CD97P48960 835 aa4.22□□□□□ -1.73
LIMA1-207ENST00000551486 GP2P55259 537 aaKnown RBP4.22□□□□□ -1.73
LIMA1-207ENST00000551486 HIF1AQ16665 826 aa4.22□□□□□ -1.73
LIMA1-207ENST00000551486 WFDC8Q8IUA0 241 aa4.22□□□□□ -1.73
LIMA1-207ENST00000551486 ZDHHC1Q8WTX9 485 aa4.22□□□□□ -1.73
LIMA1-207ENST00000551486 DNAJB12Q9NXW2 375 aaKnown RBP4.22□□□□□ -1.73
LIMA1-207ENST00000551486 NOD1Q9Y239 953 aa4.22□□□□□ -1.73
LIMA1-207ENST00000551486 LZTS3O60299 673 aaPredicted RBP4.21□□□□□ -1.74
LIMA1-207ENST00000551486 GRIK1P39086 918 aa4.21□□□□□ -1.74
LIMA1-207ENST00000551486 SLC9A9Q8IVB4 645 aa4.21□□□□□ -1.74
LIMA1-207ENST00000551486 DCAF11Q8TEB1 546 aa4.21□□□□□ -1.74
LIMA1-207ENST00000551486 MEGF10Q96KG7 1140 aa4.21□□□□□ -1.74
LIMA1-207ENST00000551486 AKTIPQ9H8T0 292 aa4.21□□□□□ -1.74
LIMA1-207ENST00000551486 SNRKQ9NRH2 765 aa4.21□□□□□ -1.74
LIMA1-207ENST00000551486 ZNF358Q9NW07 568 aa4.21□□□□□ -1.74
LIMA1-207ENST00000551486 PCDHGA11Q9Y5H2 935 aa4.21□□□□□ -1.74
LIMA1-207ENST00000551486 SOX11P35716 441 aa4.2□□□□□ -1.74
LIMA1-207ENST00000551486 WASHC4Q2M389 1173 aa4.2□□□□□ -1.74
LIMA1-207ENST00000551486 FAM35AQ86V20 835 aa4.2□□□□□ -1.74
LIMA1-207ENST00000551486 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.2□□□□□ -1.74
LIMA1-207ENST00000551486 IL27Q8NEV9 243 aa4.2□□□□□ -1.74
LIMA1-207ENST00000551486 HSH2DQ96JZ2 352 aa4.2□□□□□ -1.74
LIMA1-207ENST00000551486 TBC1D2BQ9UPU7 963 aa4.2□□□□□ -1.74
LIMA1-207ENST00000551486 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-207ENST00000551486 OAS3Q9Y6K5 1087 aaKnown RBP4.2□□□□□ -1.74
LIMA1-207ENST00000551486 ARID4AP29374 1257 aaPredicted RBP4.19□□□□□ -1.74
LIMA1-207ENST00000551486 PSMA6P60900 246 aaKnown RBP4.19□□□□□ -1.74
LIMA1-207ENST00000551486 GTF2IP78347 998 aa4.19□□□□□ -1.74
LIMA1-207ENST00000551486 TYRO3Q06418 890 aa4.19□□□□□ -1.74
LIMA1-207ENST00000551486 VAC14Q08AM6 782 aa4.19□□□□□ -1.74
LIMA1-207ENST00000551486 INTS5Q6P9B9 1019 aaKnown RBP4.19□□□□□ -1.74
LIMA1-207ENST00000551486 C7orf43Q8WVR3 580 aa4.19□□□□□ -1.74
LIMA1-207ENST00000551486 SUSD3Q96L08 255 aa4.19□□□□□ -1.74
LIMA1-207ENST00000551486 MRPL18Q9H0U6 180 aaKnown RBP4.19□□□□□ -1.74
LIMA1-207ENST00000551486 FRRS1LQ9P0K9 344 aa4.19□□□□□ -1.74
LIMA1-207ENST00000551486 RAXQ9Y2V3 346 aa4.19□□□□□ -1.74
LIMA1-207ENST00000551486 HCN4Q9Y3Q4 1203 aa4.19□□□□□ -1.74
LIMA1-207ENST00000551486 IGLV1-40P01703 118 aa4.18□□□□□ -1.74
LIMA1-207ENST00000551486 CPB1P15086 417 aa4.18□□□□□ -1.74
LIMA1-207ENST00000551486 CCINQ13939 588 aa4.18□□□□□ -1.74
LIMA1-207ENST00000551486 TBCELQ5QJ74 424 aa4.18□□□□□ -1.74
LIMA1-207ENST00000551486 ELMSAN1Q6PJG2 1045 aa4.18□□□□□ -1.74
LIMA1-207ENST00000551486 DZIP1LQ8IYY4 767 aaKnown RBP4.18□□□□□ -1.74
LIMA1-207ENST00000551486 TNS4Q8IZW8 715 aa4.18□□□□□ -1.74
LIMA1-207ENST00000551486 PHACTR1Q9C0D0 580 aa4.18□□□□□ -1.74
LIMA1-207ENST00000551486 STOML1Q9UBI4 398 aa4.18□□□□□ -1.74
LIMA1-207ENST00000551486 KIAA1324LA8MWY0 1029 aaPredicted RBP4.17□□□□□ -1.74
LIMA1-207ENST00000551486 EPB42P16452 691 aa4.17□□□□□ -1.74
LIMA1-207ENST00000551486 NFKB1P19838 968 aa4.17□□□□□ -1.74
LIMA1-207ENST00000551486 HIRAP54198 1017 aaPredicted RBP4.17□□□□□ -1.74
LIMA1-207ENST00000551486 ILDR2Q71H61 639 aa4.17□□□□□ -1.74
LIMA1-207ENST00000551486 BTLAQ7Z6A9 289 aa4.17□□□□□ -1.74
LIMA1-207ENST00000551486 TRIM50Q86XT4 487 aa4.17□□□□□ -1.74
LIMA1-207ENST00000551486 TMEM130Q8N3G9 435 aa4.17□□□□□ -1.74
LIMA1-207ENST00000551486 TTC9Q92623 222 aa4.17□□□□□ -1.74
LIMA1-207ENST00000551486 WNT11O96014 354 aa4.16□□□□□ -1.74
LIMA1-207ENST00000551486 SKIP12755 728 aa4.16□□□□□ -1.74
LIMA1-207ENST00000551486 EPHA4P54764 986 aa4.16□□□□□ -1.74
LIMA1-207ENST00000551486 BRPF1P55201 1214 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-207ENST00000551486 IRF5Q13568 498 aa4.16□□□□□ -1.74
LIMA1-207ENST00000551486 ZNF280CQ8ND82 737 aa4.16□□□□□ -1.74
LIMA1-207ENST00000551486 GSX2Q9BZM3 304 aa4.16□□□□□ -1.74
LIMA1-207ENST00000551486 SRA1Q9HD15 236 aaKnown RBP4.16□□□□□ -1.74
LIMA1-207ENST00000551486 NAGPAQ9UK23 515 aa4.16□□□□□ -1.74
LIMA1-207ENST00000551486 RBM19Q9Y4C8 960 aaKnown RBP4.16□□□□□ -1.74
LIMA1-207ENST00000551486 DLL1O00548 723 aa4.15□□□□□ -1.75
LIMA1-207ENST00000551486 DHX15O43143 795 aaKnown RBP4.15□□□□□ -1.75
LIMA1-207ENST00000551486 TGFB1P01137 390 aa4.15□□□□□ -1.75
LIMA1-207ENST00000551486 GLB1P16278 677 aa4.15□□□□□ -1.75
LIMA1-207ENST00000551486 NEUROD2Q15784 382 aa4.15□□□□□ -1.75
LIMA1-207ENST00000551486 SH3PXD2AQ5TCZ1 1133 aa4.15□□□□□ -1.75
LIMA1-207ENST00000551486 MAP4K3Q8IVH8 894 aa4.15□□□□□ -1.75
LIMA1-207ENST00000551486 F8W735 103 aaPredicted RBP4.14□□□□□ -1.75
LIMA1-207ENST00000551486 ALX3O95076 343 aa4.14□□□□□ -1.75
LIMA1-207ENST00000551486 MAP3K6O95382 1288 aa4.14□□□□□ -1.75
LIMA1-207ENST00000551486 MED26O95402 600 aa4.14□□□□□ -1.75
LIMA1-207ENST00000551486 ABL2P42684 1182 aa4.14□□□□□ -1.75
LIMA1-207ENST00000551486 ATP1A2P50993 1020 aa4.14□□□□□ -1.75
LIMA1-207ENST00000551486 GRIK5Q16478 980 aa4.14□□□□□ -1.75
LIMA1-207ENST00000551486 PERM1Q5SV97 790 aa4.14□□□□□ -1.75
LIMA1-207ENST00000551486 LPIN3Q9BQK8 851 aa4.14□□□□□ -1.75
LIMA1-207ENST00000551486 PPP1R12BO60237 982 aaPredicted RBP4.13□□□□□ -1.75
LIMA1-207ENST00000551486 DEAF1O75398 565 aaPredicted RBP4.13□□□□□ -1.75
LIMA1-207ENST00000551486 NCOA4Q13772 614 aa4.13□□□□□ -1.75
LIMA1-207ENST00000551486 IER5Q5VY09 327 aa4.13□□□□□ -1.75
LIMA1-207ENST00000551486 DHX32Q7L7V1 743 aaKnown RBP4.13□□□□□ -1.75
LIMA1-207ENST00000551486 ALDH16A1Q8IZ83 802 aa4.13□□□□□ -1.75
LIMA1-207ENST00000551486 NFATC2IPQ8NCF5 419 aa4.13□□□□□ -1.75
LIMA1-207ENST00000551486 TRPM4Q8TD43 1214 aa4.13□□□□□ -1.75
LIMA1-207ENST00000551486 CEP41Q9BYV8 373 aa4.13□□□□□ -1.75
LIMA1-207ENST00000551486 SMG9Q9H0W8 520 aaKnown RBP4.13□□□□□ -1.75
LIMA1-207ENST00000551486 RBSNQ9H1K0 784 aa4.13□□□□□ -1.75
LIMA1-207ENST00000551486 TSPAN10Q9H1Z9 355 aaPredicted RBP4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 126.9 ms