RNA–Protein interactions for RNA: ENST00000550208.1

BRF1-216, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 3

Gene BRF1, Length 1,040 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-216ENST00000550208 KIAA1551Q9HCM1 1747 aa28.77■■■□□ 2.2
BRF1-216ENST00000550208 SYNE4Q8N205 404 aa28.77■■■□□ 2.2
BRF1-216ENST00000550208 TRMT112Q9UI30 125 aaKnown RBP28.77■■■□□ 2.2
BRF1-216ENST00000550208 IBTKQ9P2D0 1353 aaPredicted RBP28.76■■■□□ 2.2
BRF1-216ENST00000550208 H0YIN7 160 aa28.76■■■□□ 2.19
BRF1-216ENST00000550208 GPR162Q16538 588 aa28.76■■■□□ 2.19
BRF1-216ENST00000550208 ANKRD31Q8N7Z5 1873 aa28.76■■■□□ 2.19
BRF1-216ENST00000550208 DNAAF4Q8WXU2 420 aa28.75■■■□□ 2.19
BRF1-216ENST00000550208 DCAF8L1A6NGE4 600 aa28.74■■■□□ 2.19
BRF1-216ENST00000550208 F6X3S4 739 aa28.74■■■□□ 2.19
BRF1-216ENST00000550208 IGKV5-2P06315 115 aa28.74■■■□□ 2.19
BRF1-216ENST00000550208 PIM2Q9P1W9 311 aa28.74■■■□□ 2.19
BRF1-216ENST00000550208 ABCC12Q96J65 1359 aa28.74■■■□□ 2.19
BRF1-216ENST00000550208 YBX3P16989 372 aaKnown RBP eCLIP28.73■■■□□ 2.19
BRF1-216ENST00000550208 RARSP54136 660 aaKnown RBP28.73■■■□□ 2.19
BRF1-216ENST00000550208 SLC10A5Q5PT55 438 aa28.73■■■□□ 2.19
BRF1-216ENST00000550208 SMC4Q9NTJ3 1288 aa28.73■■■□□ 2.19
BRF1-216ENST00000550208 PDZRN3Q9UPQ7 1066 aa28.73■■■□□ 2.19
BRF1-216ENST00000550208 KLRG2A4D1S0 409 aaPredicted RBP28.72■■■□□ 2.19
BRF1-216ENST00000550208 NEXNQ0ZGT2 675 aa28.72■■■□□ 2.19
BRF1-216ENST00000550208 CCDC191Q8NCU4 936 aa28.72■■■□□ 2.19
BRF1-216ENST00000550208 FAM89AQ96GI7 184 aa28.72■■■□□ 2.19
BRF1-216ENST00000550208 CWF19L2Q2TBE0 894 aaKnown RBP28.71■■■□□ 2.19
BRF1-216ENST00000550208 ZNF622Q969S3 477 aaKnown RBP eCLIP28.71■■■□□ 2.19
BRF1-216ENST00000550208 CWC25Q9NXE8 425 aaPredicted RBP28.71■■■□□ 2.19
BRF1-216ENST00000550208 SH3TC1Q8TE82 1336 aa28.7■■■□□ 2.19
BRF1-216ENST00000550208 SRGNP10124 158 aa28.7■■■□□ 2.18
BRF1-216ENST00000550208 RTL5Q5HYW3 569 aaPredicted RBP28.7■■■□□ 2.18
BRF1-216ENST00000550208 JARID2Q92833 1246 aaPredicted RBP28.7■■■□□ 2.18
BRF1-216ENST00000550208 BCS1LQ9Y276 419 aa28.7■■■□□ 2.18
BRF1-216ENST00000550208 RNF123Q5XPI4 1314 aa28.69■■■□□ 2.18
BRF1-216ENST00000550208 NEURL1BA8MQ27 555 aa28.69■■■□□ 2.18
BRF1-216ENST00000550208 HCLS1P14317 486 aaPredicted RBP28.69■■■□□ 2.18
BRF1-216ENST00000550208 C3orf67Q6ZVT6 689 aa28.69■■■□□ 2.18
BRF1-216ENST00000550208 DALRD3Q5D0E6 543 aaKnown RBP28.68■■■□□ 2.18
BRF1-216ENST00000550208 MASTLQ96GX5 879 aa28.68■■■□□ 2.18
BRF1-216ENST00000550208 YTHDC1Q96MU7 727 aaKnown RBP28.68■■■□□ 2.18
BRF1-216ENST00000550208 ZBTB38Q8NAP3 1195 aaPredicted RBP28.67■■■□□ 2.18
BRF1-216ENST00000550208 NLRP3Q96P20 1036 aa28.67■■■□□ 2.18
BRF1-216ENST00000550208 NOB1Q9ULX3 412 aaKnown RBP28.67■■■□□ 2.18
BRF1-216ENST00000550208 BRPF1P55201 1214 aaPredicted RBP28.66■■■□□ 2.18
BRF1-216ENST00000550208 BEND3Q5T5X7 828 aa28.66■■■□□ 2.18
BRF1-216ENST00000550208 STYK1Q6J9G0 422 aa28.66■■■□□ 2.18
BRF1-216ENST00000550208 TTLL6Q8N841 843 aa28.66■■■□□ 2.18
BRF1-216ENST00000550208 LINS1Q8NG48 757 aa28.66■■■□□ 2.18
BRF1-216ENST00000550208 PTPRCP08575 1304 aa28.66■■■□□ 2.18
BRF1-216ENST00000550208 BCAR3O75815 825 aa28.65■■■□□ 2.18
BRF1-216ENST00000550208 PCCAP05165 728 aaPredicted RBP28.65■■■□□ 2.18
BRF1-216ENST00000550208 NPR1P16066 1061 aa28.65■■■□□ 2.18
BRF1-216ENST00000550208 SLC4A10Q6U841 1118 aa28.65■■■□□ 2.18
BRF1-216ENST00000550208 IRS4O14654 1257 aaPredicted RBP28.64■■■□□ 2.18
BRF1-216ENST00000550208 CRY2Q49AN0 593 aa28.64■■■□□ 2.18
BRF1-216ENST00000550208 TNRC6CQ9HCJ0 1690 aaKnown RBP28.64■■■□□ 2.17
BRF1-216ENST00000550208 BRCA1P38398 1863 aaKnown RBP28.63■■■□□ 2.17
BRF1-216ENST00000550208 RIC1Q4ADV7 1423 aa28.63■■■□□ 2.17
BRF1-216ENST00000550208 GRIN3BO60391 1043 aa28.63■■■□□ 2.17
BRF1-216ENST00000550208 GCKRQ14397 625 aa28.63■■■□□ 2.17
BRF1-216ENST00000550208 COL11A2P13942 1736 aaPredicted RBP28.63■■■□□ 2.17
BRF1-216ENST00000550208 H7C1W4 665 aa28.62■■■□□ 2.17
BRF1-216ENST00000550208 CNKSR1Q969H4 720 aa28.62■■■□□ 2.17
BRF1-216ENST00000550208 DLEC1Q9Y238 1755 aa28.6■■■□□ 2.17
BRF1-216ENST00000550208 RPGRQ92834 1020 aaKnown RBP28.6■■■□□ 2.17
BRF1-216ENST00000550208 HOXA10P31260 410 aaPredicted RBP28.59■■■□□ 2.17
BRF1-216ENST00000550208 ZNF219Q9P2Y4 722 aaPredicted RBP28.59■■■□□ 2.17
BRF1-216ENST00000550208 RBM17Q96I25 401 aaKnown RBP28.58■■■□□ 2.17
BRF1-216ENST00000550208 SRCIN1Q9C0H9 1055 aa28.58■■■□□ 2.17
BRF1-216ENST00000550208 ALDH1L1O75891 902 aa28.57■■■□□ 2.16
BRF1-216ENST00000550208 ALDH1B1P30837 517 aa28.57■■■□□ 2.16
BRF1-216ENST00000550208 PRPF40BQ6NWY9 871 aaKnown RBP28.57■■■□□ 2.16
BRF1-216ENST00000550208 ARHGAP27Q6ZUM4 889 aa28.57■■■□□ 2.16
BRF1-216ENST00000550208 UBE3BQ7Z3V4 1068 aa28.57■■■□□ 2.16
BRF1-216ENST00000550208 CASP7P55210 303 aa28.56■■■□□ 2.16
BRF1-216ENST00000550208 SF3B3Q15393 1217 aaKnown RBP28.56■■■□□ 2.16
BRF1-216ENST00000550208 CRAMP1Q96RY5 1269 aa28.56■■■□□ 2.16
BRF1-216ENST00000550208 CDHR2Q9BYE9 1310 aa28.56■■■□□ 2.16
BRF1-216ENST00000550208 API5Q9BZZ5 524 aaKnown RBP28.56■■■□□ 2.16
BRF1-216ENST00000550208 DDX60Q8IY21 1712 aaKnown RBP28.55■■■□□ 2.16
BRF1-216ENST00000550208 C21orf2O43822 256 aa28.55■■■□□ 2.16
BRF1-216ENST00000550208 PDE8AO60658 829 aa28.55■■■□□ 2.16
BRF1-216ENST00000550208 ARHGAP45Q92619 1136 aa28.55■■■□□ 2.16
BRF1-216ENST00000550208 FRAT1Q92837 279 aaPredicted RBP28.55■■■□□ 2.16
BRF1-216ENST00000550208 SLX4Q8IY92 1834 aa28.55■■■□□ 2.16
BRF1-216ENST00000550208 KIF16BQ96L93 1317 aa28.54■■■□□ 2.16
BRF1-216ENST00000550208 HSP90B1P14625 803 aaKnown RBP28.54■■■□□ 2.16
BRF1-216ENST00000550208 LAMB2P55268 1798 aa28.53■■■□□ 2.16
BRF1-216ENST00000550208 C7orf43Q8WVR3 580 aa28.53■■■□□ 2.16
BRF1-216ENST00000550208 IPO8O15397 1037 aaKnown RBP28.52■■■□□ 2.16
BRF1-216ENST00000550208 ARFGEF1Q9Y6D6 1849 aa28.52■■■□□ 2.16
BRF1-216ENST00000550208 DDX46Q7L014 1031 aaKnown RBP28.51■■■□□ 2.15
BRF1-216ENST00000550208 C9orf78Q9NZ63 289 aaPredicted RBP28.51■■■□□ 2.15
BRF1-216ENST00000550208 TNNQ9UQP3 1299 aa28.51■■■□□ 2.15
BRF1-216ENST00000550208 ABCC4O15439 1325 aa28.5■■■□□ 2.15
BRF1-216ENST00000550208 GRM8O00222 908 aa28.5■■■□□ 2.15
BRF1-216ENST00000550208 OLFM4Q6UX06 510 aa28.5■■■□□ 2.15
BRF1-216ENST00000550208 CCDC85AQ96PX6 553 aaPredicted RBP28.5■■■□□ 2.15
BRF1-216ENST00000550208 CACNA1SQ13698 1873 aa28.5■■■□□ 2.15
BRF1-216ENST00000550208 PLA2G12BQ9BX93 195 aa28.49■■■□□ 2.15
BRF1-216ENST00000550208 TRIM27P14373 513 aa28.48■■■□□ 2.15
BRF1-216ENST00000550208 ATF7IPQ6VMQ6 1270 aa28.48■■■□□ 2.15
BRF1-216ENST00000550208 TTLL11Q8NHH1 800 aa28.48■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms