RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 RIC1Q4ADV7 1423 aa21.25■□□□□ 0.99
VPS29-207ENST00000549970 UTP14AQ9BVJ6 771 aaKnown RBP21.25■□□□□ 0.99
VPS29-207ENST00000549970 ANKRD36CQ5JPF3 1778 aa21.25■□□□□ 0.99
VPS29-207ENST00000549970 VEGFAP15692 232 aaPredicted RBP21.24■□□□□ 0.99
VPS29-207ENST00000549970 FKBP4Q02790 459 aaKnown RBP eCLIP21.24■□□□□ 0.99
VPS29-207ENST00000549970 HSP90AB3PQ58FF7 597 aa21.24■□□□□ 0.99
VPS29-207ENST00000549970 DUSP27Q5VZP5 1158 aa21.24■□□□□ 0.99
VPS29-207ENST00000549970 ZNF316A6NFI3 1004 aaPredicted RBP21.23■□□□□ 0.99
VPS29-207ENST00000549970 ZNF853P0CG23 659 aa21.23■□□□□ 0.99
VPS29-207ENST00000549970 APLP1P51693 650 aa21.23■□□□□ 0.99
VPS29-207ENST00000549970 C3orf67Q6ZVT6 689 aa21.23■□□□□ 0.99
VPS29-207ENST00000549970 RTKN2Q8IZC4 609 aa21.23■□□□□ 0.99
VPS29-207ENST00000549970 ZNF277Q9NRM2 450 aaPredicted RBP21.23■□□□□ 0.99
VPS29-207ENST00000549970 IFT57Q9NWB7 429 aa21.23■□□□□ 0.99
VPS29-207ENST00000549970 WDR90Q96KV7 1748 aa21.22■□□□□ 0.99
VPS29-207ENST00000549970 GNAI1P63096 354 aa21.22■□□□□ 0.99
VPS29-207ENST00000549970 CALD1Q05682 793 aaKnown RBP21.22■□□□□ 0.99
VPS29-207ENST00000549970 FSTL1Q12841 308 aa21.22■□□□□ 0.99
VPS29-207ENST00000549970 DBF4Q9UBU7 674 aaPredicted RBP21.22■□□□□ 0.99
VPS29-207ENST00000549970 HOXA10P31260 410 aaPredicted RBP21.21■□□□□ 0.99
VPS29-207ENST00000549970 TCIRG1Q13488 830 aa21.21■□□□□ 0.99
VPS29-207ENST00000549970 NLRP10Q86W26 655 aa21.21■□□□□ 0.99
VPS29-207ENST00000549970 RBM17Q96I25 401 aaKnown RBP21.21■□□□□ 0.99
VPS29-207ENST00000549970 NLRP3Q96P20 1036 aa21.21■□□□□ 0.99
VPS29-207ENST00000549970 POTECB2RU33 542 aa21.2■□□□□ 0.98
VPS29-207ENST00000549970 DDNO94850 711 aaPredicted RBP21.2■□□□□ 0.98
VPS29-207ENST00000549970 SMC1BQ8NDV3 1235 aa21.2■□□□□ 0.98
VPS29-207ENST00000549970 ZNF428Q96B54 188 aa21.2■□□□□ 0.98
VPS29-207ENST00000549970 ELL2O00472 640 aaPredicted RBP21.19■□□□□ 0.98
VPS29-207ENST00000549970 TCERG1O14776 1098 aaKnown RBP21.19■□□□□ 0.98
VPS29-207ENST00000549970 SLC10A5Q5PT55 438 aa21.19■□□□□ 0.98
VPS29-207ENST00000549970 SYNE4Q8N205 404 aa21.19■□□□□ 0.98
VPS29-207ENST00000549970 CRAMP1Q96RY5 1269 aa21.19■□□□□ 0.98
VPS29-207ENST00000549970 PPEF1O14829 653 aaPredicted RBP21.18■□□□□ 0.98
VPS29-207ENST00000549970 IARSP41252 1262 aaKnown RBP21.18■□□□□ 0.98
VPS29-207ENST00000549970 ANKRD13DQ6ZTN6 518 aa21.18■□□□□ 0.98
VPS29-207ENST00000549970 SLC51AQ86UW1 340 aa21.18■□□□□ 0.98
VPS29-207ENST00000549970 PLBD2Q8NHP8 589 aa21.18■□□□□ 0.98
VPS29-207ENST00000549970 HYPKQ9NX55 129 aa21.18■□□□□ 0.98
VPS29-207ENST00000549970 TRMT112Q9UI30 125 aaKnown RBP21.18■□□□□ 0.98
VPS29-207ENST00000549970 RNF123Q5XPI4 1314 aa21.18■□□□□ 0.98
VPS29-207ENST00000549970 SNED1Q8TER0 1413 aa21.18■□□□□ 0.98
VPS29-207ENST00000549970 ANP32CO43423 234 aa21.17■□□□□ 0.98
VPS29-207ENST00000549970 HCLS1P14317 486 aaPredicted RBP21.17■□□□□ 0.98
VPS29-207ENST00000549970 CC2D2BQ6DHV5 1058 aa21.17■□□□□ 0.98
VPS29-207ENST00000549970 SH3TC1Q8TE82 1336 aa21.16■□□□□ 0.98
VPS29-207ENST00000549970 PSMD1Q99460 953 aa21.16■□□□□ 0.98
VPS29-207ENST00000549970 MRS2Q9HD23 443 aa21.16■□□□□ 0.98
VPS29-207ENST00000549970 LAMB2P55268 1798 aa21.15■□□□□ 0.98
VPS29-207ENST00000549970 ZNF541Q9H0D2 1346 aa21.15■□□□□ 0.98
VPS29-207ENST00000549970 HTRA3P83110 453 aa21.15■□□□□ 0.98
VPS29-207ENST00000549970 C8orf58Q8NAV2 365 aa21.15■□□□□ 0.98
VPS29-207ENST00000549970 ABCC4O15439 1325 aa21.14■□□□□ 0.97
VPS29-207ENST00000549970 ATP5J2-PTCD1G3V325 749 aa21.14■□□□□ 0.97
VPS29-207ENST00000549970 ISCA1Q9BUE6 129 aa21.13■□□□□ 0.97
VPS29-207ENST00000549970 PHAXQ9H814 394 aaKnown RBP21.13■□□□□ 0.97
VPS29-207ENST00000549970 GOLGA2Q08379 1002 aa21.12■□□□□ 0.97
VPS29-207ENST00000549970 GRIPAP1Q4V328 841 aa21.12■□□□□ 0.97
VPS29-207ENST00000549970 JDP2Q8WYK2 163 aa21.12■□□□□ 0.97
VPS29-207ENST00000549970 TMX4Q9H1E5 349 aaPredicted RBP21.12■□□□□ 0.97
VPS29-207ENST00000549970 FZD9O00144 591 aa21.11■□□□□ 0.97
VPS29-207ENST00000549970 RIC3Q7Z5B4 369 aa21.11■□□□□ 0.97
VPS29-207ENST00000549970 DNAJC5GQ8N7S2 189 aa21.11■□□□□ 0.97
VPS29-207ENST00000549970 TSR2Q969E8 191 aaKnown RBP21.11■□□□□ 0.97
VPS29-207ENST00000549970 FAM89AQ96GI7 184 aa21.11■□□□□ 0.97
VPS29-207ENST00000549970 L3MBTL3Q96JM7 780 aaPredicted RBP21.11■□□□□ 0.97
VPS29-207ENST00000549970 ATP6V0A2Q9Y487 856 aa21.11■□□□□ 0.97
VPS29-207ENST00000549970 COL4A5P29400 1685 aa21.1■□□□□ 0.97
VPS29-207ENST00000549970 IQCA1LA6NCM1 817 aa21.1■□□□□ 0.97
VPS29-207ENST00000549970 POTEIP0CG38 1075 aa21.1■□□□□ 0.97
VPS29-207ENST00000549970 POTEJP0CG39 1038 aa21.1■□□□□ 0.97
VPS29-207ENST00000549970 CCDC27Q2M243 656 aa21.1■□□□□ 0.97
VPS29-207ENST00000549970 RTL5Q5HYW3 569 aaPredicted RBP21.1■□□□□ 0.97
VPS29-207ENST00000549970 DDX46Q7L014 1031 aaKnown RBP21.1■□□□□ 0.97
VPS29-207ENST00000549970 WWC1Q8IX03 1113 aa21.1■□□□□ 0.97
VPS29-207ENST00000549970 TSPYL6Q8N831 410 aa21.1■□□□□ 0.97
VPS29-207ENST00000549970 DDX60Q8IY21 1712 aaKnown RBP21.09■□□□□ 0.97
VPS29-207ENST00000549970 SCN4AP35499 1836 aa21.09■□□□□ 0.97
VPS29-207ENST00000549970 LARGE2Q8N3Y3 721 aa21.09■□□□□ 0.97
VPS29-207ENST00000549970 BBOX1O75936 387 aa21.08■□□□□ 0.97
VPS29-207ENST00000549970 TAF1P21675 1872 aa21.08■□□□□ 0.97
VPS29-207ENST00000549970 GRAPQ13588 217 aa21.08■□□□□ 0.97
VPS29-207ENST00000549970 CCDC30Q5VVM6 783 aa21.08■□□□□ 0.97
VPS29-207ENST00000549970 GRAPLQ8TC17 118 aaPredicted RBP21.08■□□□□ 0.97
VPS29-207ENST00000549970 TAF1DQ9H5J8 278 aaPredicted RBP21.08■□□□□ 0.97
VPS29-207ENST00000549970 PPIP5K2O43314 1243 aa21.07■□□□□ 0.96
VPS29-207ENST00000549970 EIF6P56537 245 aaKnown RBP21.07■□□□□ 0.96
VPS29-207ENST00000549970 CHADLQ6NUI6 762 aa21.07■□□□□ 0.96
VPS29-207ENST00000549970 MYD88Q99836 296 aa21.07■□□□□ 0.96
VPS29-207ENST00000549970 SALL2Q9Y467 1007 aaPredicted RBP21.07■□□□□ 0.96
VPS29-207ENST00000549970 TRIM28Q13263 835 aaKnown RBP21.06■□□□□ 0.96
VPS29-207ENST00000549970 SP8Q8IXZ3 490 aa21.06■□□□□ 0.96
VPS29-207ENST00000549970 CHMP4AQ9BY43 222 aa21.06■□□□□ 0.96
VPS29-207ENST00000549970 HACL1Q9UJ83 578 aa21.06■□□□□ 0.96
VPS29-207ENST00000549970 GJA3Q9Y6H8 435 aa21.06■□□□□ 0.96
VPS29-207ENST00000549970 IRS4O14654 1257 aaPredicted RBP21.05■□□□□ 0.96
VPS29-207ENST00000549970 AOC3Q16853 763 aa21.05■□□□□ 0.96
VPS29-207ENST00000549970 EAPPQ56P03 285 aaPredicted RBP21.05■□□□□ 0.96
VPS29-207ENST00000549970 DPP8Q6V1X1 898 aaPredicted RBP21.05■□□□□ 0.96
VPS29-207ENST00000549970 NIM1KQ8IY84 436 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms