RNA–Protein interactions for RNA: ENST00000549678.1

PTCH1-219, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 578 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-219ENST00000549678 HLFQ16534 295 aa9.35□□□□□ -0.91
PTCH1-219ENST00000549678 PROSER3Q2NL68 480 aa9.35□□□□□ -0.91
PTCH1-219ENST00000549678 DPY19L2Q6NUT2 758 aa9.35□□□□□ -0.91
PTCH1-219ENST00000549678 MIER1Q8N108 512 aa9.35□□□□□ -0.91
PTCH1-219ENST00000549678 TAOK3Q9H2K8 898 aa9.35□□□□□ -0.91
PTCH1-219ENST00000549678 HYPKQ9NX55 129 aa9.35□□□□□ -0.91
PTCH1-219ENST00000549678 IBTKQ9P2D0 1353 aaPredicted RBP9.35□□□□□ -0.91
PTCH1-219ENST00000549678 C21orf2O43822 256 aa9.34□□□□□ -0.91
PTCH1-219ENST00000549678 PRPF40BQ6NWY9 871 aaKnown RBP9.34□□□□□ -0.91
PTCH1-219ENST00000549678 GIGYF2Q6Y7W6 1299 aaKnown RBP9.34□□□□□ -0.91
PTCH1-219ENST00000549678 PPP1R42Q7Z4L9 355 aa9.34□□□□□ -0.91
PTCH1-219ENST00000549678 RIC3Q7Z5B4 369 aa9.34□□□□□ -0.91
PTCH1-219ENST00000549678 C8orf58Q8NAV2 365 aa9.34□□□□□ -0.91
PTCH1-219ENST00000549678 SMC1BQ8NDV3 1235 aa9.34□□□□□ -0.91
PTCH1-219ENST00000549678 FER1L6Q2WGJ9 1857 aa9.34□□□□□ -0.91
PTCH1-219ENST00000549678 COL11A2P13942 1736 aaPredicted RBP9.34□□□□□ -0.92
PTCH1-219ENST00000549678 DICER1Q9UPY3 1922 aaKnown RBP9.33□□□□□ -0.92
PTCH1-219ENST00000549678 TCERG1O14776 1098 aaKnown RBP9.33□□□□□ -0.92
PTCH1-219ENST00000549678 ALDH1B1P30837 517 aa9.33□□□□□ -0.92
PTCH1-219ENST00000549678 ERFEQ4G0M1 354 aa9.33□□□□□ -0.92
PTCH1-219ENST00000549678 GRIPAP1Q4V328 841 aa9.33□□□□□ -0.92
PTCH1-219ENST00000549678 PARP10Q53GL7 1025 aa9.33□□□□□ -0.92
PTCH1-219ENST00000549678 CCDC93Q567U6 631 aa9.33□□□□□ -0.92
PTCH1-219ENST00000549678 ANKRD13DQ6ZTN6 518 aa9.33□□□□□ -0.92
PTCH1-219ENST00000549678 RRAGCQ9HB90 399 aa9.33□□□□□ -0.92
PTCH1-219ENST00000549678 CACNA1FO60840 1977 aa9.33□□□□□ -0.92
PTCH1-219ENST00000549678 RIC1Q4ADV7 1423 aa9.32□□□□□ -0.92
PTCH1-219ENST00000549678 PRELPP51888 382 aa9.32□□□□□ -0.92
PTCH1-219ENST00000549678 EXOSC9Q06265 439 aaKnown RBP9.32□□□□□ -0.92
PTCH1-219ENST00000549678 PDIA6Q15084 440 aa9.32□□□□□ -0.92
PTCH1-219ENST00000549678 CC2D2BQ6DHV5 1058 aa9.32□□□□□ -0.92
PTCH1-219ENST00000549678 NUTM1Q86Y26 1132 aa9.32□□□□□ -0.92
PTCH1-219ENST00000549678 RTKN2Q8IZC4 609 aa9.32□□□□□ -0.92
PTCH1-219ENST00000549678 TSPYL6Q8N831 410 aa9.32□□□□□ -0.92
PTCH1-219ENST00000549678 PLBD2Q8NHP8 589 aa9.32□□□□□ -0.92
PTCH1-219ENST00000549678 C7orf43Q8WVR3 580 aa9.32□□□□□ -0.92
PTCH1-219ENST00000549678 RPGRQ92834 1020 aaKnown RBP9.32□□□□□ -0.92
PTCH1-219ENST00000549678 CCDC88AQ3V6T2 1871 aa9.32□□□□□ -0.92
PTCH1-219ENST00000549678 RNF123Q5XPI4 1314 aa9.31□□□□□ -0.92
PTCH1-219ENST00000549678 SLX4Q8IY92 1834 aa9.31□□□□□ -0.92
PTCH1-219ENST00000549678 CRY2Q49AN0 593 aa9.31□□□□□ -0.92
PTCH1-219ENST00000549678 ZNF428Q96B54 188 aa9.31□□□□□ -0.92
PTCH1-219ENST00000549678 UTP14AQ9BVJ6 771 aaKnown RBP9.31□□□□□ -0.92
PTCH1-219ENST00000549678 PHAXQ9H814 394 aaKnown RBP9.31□□□□□ -0.92
PTCH1-219ENST00000549678 ZNF219Q9P2Y4 722 aaPredicted RBP9.31□□□□□ -0.92
PTCH1-219ENST00000549678 UBN2Q6ZU65 1347 aa9.31□□□□□ -0.92
PTCH1-219ENST00000549678 IQCA1LA6NCM1 817 aa9.3□□□□□ -0.92
PTCH1-219ENST00000549678 E9PSI1 815 aa9.3□□□□□ -0.92
PTCH1-219ENST00000549678 ATP5J2-PTCD1G3V325 749 aa9.3□□□□□ -0.92
PTCH1-219ENST00000549678 SLC4A2P04920 1241 aa9.3□□□□□ -0.92
PTCH1-219ENST00000549678 HNRNPUQ00839 825 aaKnown RBP eCLIP9.3□□□□□ -0.92
PTCH1-219ENST00000549678 FKBP4Q02790 459 aaKnown RBP eCLIP9.3□□□□□ -0.92
PTCH1-219ENST00000549678 NEXNQ0ZGT2 675 aa9.3□□□□□ -0.92
PTCH1-219ENST00000549678 FKBP5Q13451 457 aaPredicted RBP9.3□□□□□ -0.92
PTCH1-219ENST00000549678 TCIRG1Q13488 830 aa9.3□□□□□ -0.92
PTCH1-219ENST00000549678 SUSD4Q5VX71 490 aa9.3□□□□□ -0.92
PTCH1-219ENST00000549678 ZNF34Q8IZ26 560 aa9.3□□□□□ -0.92
PTCH1-219ENST00000549678 DNAJC5GQ8N7S2 189 aa9.3□□□□□ -0.92
PTCH1-219ENST00000549678 NLRP3Q96P20 1036 aa9.3□□□□□ -0.92
PTCH1-219ENST00000549678 MYD88Q99836 296 aa9.3□□□□□ -0.92
PTCH1-219ENST00000549678 TMX4Q9H1E5 349 aaPredicted RBP9.3□□□□□ -0.92
PTCH1-219ENST00000549678 TRMT112Q9UI30 125 aaKnown RBP9.3□□□□□ -0.92
PTCH1-219ENST00000549678 TIAM2Q8IVF5 1701 aa9.3□□□□□ -0.92
PTCH1-219ENST00000549678 WDR90Q96KV7 1748 aa9.3□□□□□ -0.92
PTCH1-219ENST00000549678 HOXA10P31260 410 aaPredicted RBP9.29□□□□□ -0.92
PTCH1-219ENST00000549678 LRP10Q7Z4F1 713 aa9.29□□□□□ -0.92
PTCH1-219ENST00000549678 PSMD1Q99460 953 aa9.29□□□□□ -0.92
PTCH1-219ENST00000549678 SH3TC1Q8TE82 1336 aa9.29□□□□□ -0.92
PTCH1-219ENST00000549678 ABCC12Q96J65 1359 aa9.28□□□□□ -0.92
PTCH1-219ENST00000549678 LAMB2P55268 1798 aa9.28□□□□□ -0.92
PTCH1-219ENST00000549678 NTSR2O95665 410 aa9.28□□□□□ -0.92
PTCH1-219ENST00000549678 RTL5Q5HYW3 569 aaPredicted RBP9.28□□□□□ -0.92
PTCH1-219ENST00000549678 NLRP10Q86W26 655 aa9.28□□□□□ -0.92
PTCH1-219ENST00000549678 KLRG1Q96E93 195 aa9.28□□□□□ -0.92
PTCH1-219ENST00000549678 L3MBTL3Q96JM7 780 aaPredicted RBP9.28□□□□□ -0.92
PTCH1-219ENST00000549678 CRAMP1Q96RY5 1269 aa9.28□□□□□ -0.92
PTCH1-219ENST00000549678 SPINK5Q9NQ38 1064 aaPredicted RBP9.28□□□□□ -0.92
PTCH1-219ENST00000549678 MAP3K2Q9Y2U5 619 aa9.28□□□□□ -0.92
PTCH1-219ENST00000549678 PI4KAP2A4QPH2 592 aa9.27□□□□□ -0.93
PTCH1-219ENST00000549678 POTECB2RU33 542 aa9.27□□□□□ -0.93
PTCH1-219ENST00000549678 VAMP4O75379 141 aa9.27□□□□□ -0.93
PTCH1-219ENST00000549678 HSP90B1P14625 803 aaKnown RBP9.27□□□□□ -0.93
PTCH1-219ENST00000549678 IARSP41252 1262 aaKnown RBP9.27□□□□□ -0.93
PTCH1-219ENST00000549678 FLIIQ13045 1269 aa9.27□□□□□ -0.93
PTCH1-219ENST00000549678 SLC10A5Q5PT55 438 aa9.27□□□□□ -0.93
PTCH1-219ENST00000549678 PI4KAP1Q8N8J0 262 aa9.27□□□□□ -0.93
PTCH1-219ENST00000549678 JMYQ8N9B5 988 aa9.27□□□□□ -0.93
PTCH1-219ENST00000549678 RBM17Q96I25 401 aaKnown RBP9.27□□□□□ -0.93
PTCH1-219ENST00000549678 CWC25Q9NXE8 425 aaPredicted RBP9.27□□□□□ -0.93
PTCH1-219ENST00000549678 DDX60Q8IY21 1712 aaKnown RBP9.26□□□□□ -0.93
PTCH1-219ENST00000549678 SNED1Q8TER0 1413 aa9.26□□□□□ -0.93
PTCH1-219ENST00000549678 KSR2Q6VAB6 950 aa9.26□□□□□ -0.93
PTCH1-219ENST00000549678 G2E3Q7L622 706 aa9.26□□□□□ -0.93
PTCH1-219ENST00000549678 JDP2Q8WYK2 163 aa9.26□□□□□ -0.93
PTCH1-219ENST00000549678 ISCA1Q9BUE6 129 aa9.26□□□□□ -0.93
PTCH1-219ENST00000549678 METTL22Q9BUU2 404 aaPredicted RBP9.26□□□□□ -0.93
PTCH1-219ENST00000549678 VPS33BQ9H267 617 aa9.26□□□□□ -0.93
PTCH1-219ENST00000549678 ZNF521Q96K83 1311 aa9.26□□□□□ -0.93
PTCH1-219ENST00000549678 SCN4AP35499 1836 aa9.26□□□□□ -0.93
PTCH1-219ENST00000549678 MYH3P11055 1940 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms