RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 GOLGA6L19H0YKK7 550 aa16.88■□□□□ 0.29
RAPGEF3-216ENST00000547856 HMMRO75330 724 aa16.88■□□□□ 0.29
RAPGEF3-216ENST00000547856 TMCO3Q6UWJ1 677 aa16.88■□□□□ 0.29
RAPGEF3-216ENST00000547856 NECAB1Q8N987 351 aa16.88■□□□□ 0.29
RAPGEF3-216ENST00000547856 TDRD7Q8NHU6 1098 aaKnown RBP16.88■□□□□ 0.29
RAPGEF3-216ENST00000547856 SIRT1Q96EB6 747 aa16.88■□□□□ 0.29
RAPGEF3-216ENST00000547856 HDGFP51858 240 aaKnown RBP16.87■□□□□ 0.29
RAPGEF3-216ENST00000547856 TPM4P67936 248 aa16.87■□□□□ 0.29
RAPGEF3-216ENST00000547856 FBXW7Q969H0 707 aa16.87■□□□□ 0.29
RAPGEF3-216ENST00000547856 CCDC34Q96HJ3 373 aa16.87■□□□□ 0.29
RAPGEF3-216ENST00000547856 CASQ1P31415 396 aa16.87■□□□□ 0.29
RAPGEF3-216ENST00000547856 EPC1Q9H2F5 836 aa16.87■□□□□ 0.29
RAPGEF3-216ENST00000547856 ROBO2Q9HCK4 1378 aa16.87■□□□□ 0.29
RAPGEF3-216ENST00000547856 CASTP20810 708 aaKnown RBP16.86■□□□□ 0.29
RAPGEF3-216ENST00000547856 SNW1Q13573 536 aaKnown RBP16.86■□□□□ 0.29
RAPGEF3-216ENST00000547856 F6X3S4 739 aa16.86■□□□□ 0.29
RAPGEF3-216ENST00000547856 NR1I2O75469 434 aa16.86■□□□□ 0.29
RAPGEF3-216ENST00000547856 IL13P35225 146 aa16.86■□□□□ 0.29
RAPGEF3-216ENST00000547856 KRT85P78386 507 aa16.86■□□□□ 0.29
RAPGEF3-216ENST00000547856 CCZ1BP86790 482 aa16.86■□□□□ 0.29
RAPGEF3-216ENST00000547856 CCZ1P86791 482 aaPredicted RBP16.86■□□□□ 0.29
RAPGEF3-216ENST00000547856 AKAP12Q02952 1782 aa16.86■□□□□ 0.29
RAPGEF3-216ENST00000547856 ADAMTS13Q76LX8 1427 aa16.86■□□□□ 0.29
RAPGEF3-216ENST00000547856 ZNF853P0CG23 659 aa16.85■□□□□ 0.29
RAPGEF3-216ENST00000547856 LTKP29376 864 aa16.85■□□□□ 0.29
RAPGEF3-216ENST00000547856 OAS2P29728 719 aaKnown RBP16.85■□□□□ 0.29
RAPGEF3-216ENST00000547856 RNF20Q5VTR2 975 aa16.85■□□□□ 0.29
RAPGEF3-216ENST00000547856 TTC14Q96N46 770 aa16.85■□□□□ 0.29
RAPGEF3-216ENST00000547856 RRS1Q15050 365 aaKnown RBP16.85■□□□□ 0.29
RAPGEF3-216ENST00000547856 BICD2Q8TD16 824 aa16.85■□□□□ 0.29
RAPGEF3-216ENST00000547856 LRRCC1Q9C099 1032 aa16.85■□□□□ 0.29
RAPGEF3-216ENST00000547856 LARP1BQ659C4 914 aaKnown RBP16.84■□□□□ 0.29
RAPGEF3-216ENST00000547856 CDC37L1Q7L3B6 337 aa16.84■□□□□ 0.29
RAPGEF3-216ENST00000547856 C3P01024 1663 aa16.84■□□□□ 0.29
RAPGEF3-216ENST00000547856 ITSN1Q15811 1721 aa16.84■□□□□ 0.29
RAPGEF3-216ENST00000547856 CEBPAP49715 358 aaPredicted RBP16.84■□□□□ 0.29
RAPGEF3-216ENST00000547856 MUM1L1Q5H9M0 696 aa16.84■□□□□ 0.29
RAPGEF3-216ENST00000547856 GPATCH11Q8N954 259 aa16.84■□□□□ 0.29
RAPGEF3-216ENST00000547856 IL1RAPL2Q9NP60 686 aa16.84■□□□□ 0.29
RAPGEF3-216ENST00000547856 GEMIN8Q9NWZ8 242 aaKnown RBP16.84■□□□□ 0.29
RAPGEF3-216ENST00000547856 SPG7Q9UQ90 795 aa16.84■□□□□ 0.29
RAPGEF3-216ENST00000547856 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.84■□□□□ 0.29
RAPGEF3-216ENST00000547856 COG3Q96JB2 828 aa16.83■□□□□ 0.29
RAPGEF3-216ENST00000547856 CDK12Q9NYV4 1490 aaPredicted RBP16.83■□□□□ 0.29
RAPGEF3-216ENST00000547856 AATKQ6ZMQ8 1374 aa16.83■□□□□ 0.28
RAPGEF3-216ENST00000547856 LMAN1P49257 510 aa16.83■□□□□ 0.28
RAPGEF3-216ENST00000547856 ICE2Q659A1 982 aa16.83■□□□□ 0.28
RAPGEF3-216ENST00000547856 C11orf57Q6ZUT1 292 aaPredicted RBP16.83■□□□□ 0.28
RAPGEF3-216ENST00000547856 NUTM1Q86Y26 1132 aa16.83■□□□□ 0.28
RAPGEF3-216ENST00000547856 UBXN4Q92575 508 aa16.83■□□□□ 0.28
RAPGEF3-216ENST00000547856 SPATA32Q96LK8 384 aa16.83■□□□□ 0.28
RAPGEF3-216ENST00000547856 GPS2Q13227 327 aa16.83■□□□□ 0.28
RAPGEF3-216ENST00000547856 DRC1Q96MC2 740 aa16.83■□□□□ 0.28
RAPGEF3-216ENST00000547856 YY1AP1Q9H869 796 aa16.83■□□□□ 0.28
RAPGEF3-216ENST00000547856 ARGLU1Q9NWB6 273 aaPredicted RBP16.83■□□□□ 0.28
RAPGEF3-216ENST00000547856 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.83■□□□□ 0.28
RAPGEF3-216ENST00000547856 KIF24Q5T7B8 1368 aa16.82■□□□□ 0.28
RAPGEF3-216ENST00000547856 ZRANB2O95218 330 aaKnown RBP eCLIP16.82■□□□□ 0.28
RAPGEF3-216ENST00000547856 PRR29P0C7W0 189 aa16.82■□□□□ 0.28
RAPGEF3-216ENST00000547856 CLSTN2Q9H4D0 955 aa16.82■□□□□ 0.28
RAPGEF3-216ENST00000547856 RRP15Q9Y3B9 282 aaKnown RBP16.82■□□□□ 0.28
RAPGEF3-216ENST00000547856 NUTM2FA1L443 756 aa16.82■□□□□ 0.28
RAPGEF3-216ENST00000547856 HOMER1Q86YM7 354 aa16.82■□□□□ 0.28
RAPGEF3-216ENST00000547856 HDAC5Q9UQL6 1122 aa16.82■□□□□ 0.28
RAPGEF3-216ENST00000547856 DLG5Q8TDM6 1919 aa16.81■□□□□ 0.28
RAPGEF3-216ENST00000547856 BECN2A8MW95 431 aa16.81■□□□□ 0.28
RAPGEF3-216ENST00000547856 SASH3O75995 380 aa16.81■□□□□ 0.28
RAPGEF3-216ENST00000547856 APPP05067 770 aa16.81■□□□□ 0.28
RAPGEF3-216ENST00000547856 HYPKQ9NX55 129 aa16.81■□□□□ 0.28
RAPGEF3-216ENST00000547856 NEMFO60524 1076 aa16.81■□□□□ 0.28
RAPGEF3-216ENST00000547856 SLC4A2P04920 1241 aa16.81■□□□□ 0.28
RAPGEF3-216ENST00000547856 SRLQ86TD4 932 aa16.81■□□□□ 0.28
RAPGEF3-216ENST00000547856 PNMA6EA0A0J9YXQ4 647 aa16.8■□□□□ 0.28
RAPGEF3-216ENST00000547856 CDC25BP30305 580 aa16.8■□□□□ 0.28
RAPGEF3-216ENST00000547856 SMC1AQ14683 1233 aaKnown RBP16.8■□□□□ 0.28
RAPGEF3-216ENST00000547856 SART3Q15020 963 aaKnown RBP16.8■□□□□ 0.28
RAPGEF3-216ENST00000547856 ADCK5Q3MIX3 580 aa16.8■□□□□ 0.28
RAPGEF3-216ENST00000547856 CWC27Q6UX04 472 aaKnown RBP16.8■□□□□ 0.28
RAPGEF3-216ENST00000547856 JAKMIP1Q96N16 626 aaKnown RBP16.8■□□□□ 0.28
RAPGEF3-216ENST00000547856 PDRG1Q9NUG6 133 aa16.8■□□□□ 0.28
RAPGEF3-216ENST00000547856 CWC15Q9P013 229 aaKnown RBP16.8■□□□□ 0.28
RAPGEF3-216ENST00000547856 ORC3Q9UBD5 711 aaPredicted RBP16.8■□□□□ 0.28
RAPGEF3-216ENST00000547856 SALL3Q9BXA9 1300 aa16.8■□□□□ 0.28
RAPGEF3-216ENST00000547856 E4F1Q66K89 784 aaPredicted RBP16.8■□□□□ 0.28
RAPGEF3-216ENST00000547856 PPP1R13BQ96KQ4 1090 aa16.8■□□□□ 0.28
RAPGEF3-216ENST00000547856 L2HGDHQ9H9P8 463 aa16.8■□□□□ 0.28
RAPGEF3-216ENST00000547856 DDX19AQ9NUU7 478 aaKnown RBP16.8■□□□□ 0.28
RAPGEF3-216ENST00000547856 DNAI1Q9UI46 699 aa16.8■□□□□ 0.28
RAPGEF3-216ENST00000547856 ANKRD65E5RJM6 399 aa16.79■□□□□ 0.28
RAPGEF3-216ENST00000547856 CEBPZQ03701 1054 aaKnown RBP16.79■□□□□ 0.28
RAPGEF3-216ENST00000547856 ST3GAL1Q11201 340 aa16.79■□□□□ 0.28
RAPGEF3-216ENST00000547856 ME3Q16798 604 aa16.79■□□□□ 0.28
RAPGEF3-216ENST00000547856 MNS1Q8NEH6 495 aa16.79■□□□□ 0.28
RAPGEF3-216ENST00000547856 SLC26A8Q96RN1 970 aa16.79■□□□□ 0.28
RAPGEF3-216ENST00000547856 ATG3Q9NT62 314 aa16.79■□□□□ 0.28
RAPGEF3-216ENST00000547856 MYCNP04198 464 aaPredicted RBP16.79■□□□□ 0.28
RAPGEF3-216ENST00000547856 IQCB1Q15051 598 aa16.79■□□□□ 0.28
RAPGEF3-216ENST00000547856 ERCC4Q92889 916 aaPredicted RBP16.79■□□□□ 0.28
RAPGEF3-216ENST00000547856 CCDC93Q567U6 631 aa16.78■□□□□ 0.28
RAPGEF3-216ENST00000547856 EP400NLQ6ZTU2 488 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms