RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 CNTROBQ8N137 903 aa17.46■□□□□ 0.39
HOXC11-202ENST00000546378 TAF6LQ9Y6J9 622 aa17.46■□□□□ 0.39
HOXC11-202ENST00000546378 KIF20BQ96Q89 1820 aa17.46■□□□□ 0.38
HOXC11-202ENST00000546378 F13A1P00488 732 aa17.45■□□□□ 0.38
HOXC11-202ENST00000546378 LIMCH1Q9UPQ0 1083 aa17.45■□□□□ 0.38
HOXC11-202ENST00000546378 ITSN1Q15811 1721 aa17.45■□□□□ 0.38
HOXC11-202ENST00000546378 PRAMEF22A3QJZ6 481 aa17.45■□□□□ 0.38
HOXC11-202ENST00000546378 CCDC85AQ96PX6 553 aaPredicted RBP17.45■□□□□ 0.38
HOXC11-202ENST00000546378 USP44Q9H0E7 712 aa17.45■□□□□ 0.38
HOXC11-202ENST00000546378 C1orf167Q5SNV9 1468 aa17.45■□□□□ 0.38
HOXC11-202ENST00000546378 ZNF710Q8N1W2 664 aa17.45■□□□□ 0.38
HOXC11-202ENST00000546378 XRN1Q8IZH2 1706 aaKnown RBP17.44■□□□□ 0.38
HOXC11-202ENST00000546378 CCT2P78371 535 aaKnown RBP17.44■□□□□ 0.38
HOXC11-202ENST00000546378 BIN1O00499 593 aa17.44■□□□□ 0.38
HOXC11-202ENST00000546378 TEFQ10587 303 aa17.44■□□□□ 0.38
HOXC11-202ENST00000546378 LGR6Q9HBX8 967 aa17.44■□□□□ 0.38
HOXC11-202ENST00000546378 NPHP3Q7Z494 1330 aa17.43■□□□□ 0.38
HOXC11-202ENST00000546378 CCDC129Q6ZRS4 1044 aa17.43■□□□□ 0.38
HOXC11-202ENST00000546378 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.43■□□□□ 0.38
HOXC11-202ENST00000546378 CYP46A1Q9Y6A2 500 aa17.43■□□□□ 0.38
HOXC11-202ENST00000546378 ADGRB2O60241 1585 aa17.43■□□□□ 0.38
HOXC11-202ENST00000546378 JAK2O60674 1132 aa17.43■□□□□ 0.38
HOXC11-202ENST00000546378 ZKSCAN1P17029 563 aaPredicted RBP17.43■□□□□ 0.38
HOXC11-202ENST00000546378 ZNF530Q6P9A1 599 aaPredicted RBP17.43■□□□□ 0.38
HOXC11-202ENST00000546378 CLASRPQ8N2M8 674 aaKnown RBP17.43■□□□□ 0.38
HOXC11-202ENST00000546378 SPATA32Q96LK8 384 aa17.43■□□□□ 0.38
HOXC11-202ENST00000546378 NUP62CLQ9H1M0 184 aa17.43■□□□□ 0.38
HOXC11-202ENST00000546378 VIRMAQ69YN4 1812 aaKnown RBP17.43■□□□□ 0.38
HOXC11-202ENST00000546378 BRINP3Q76B58 766 aa17.43■□□□□ 0.38
HOXC11-202ENST00000546378 STRN4Q9NRL3 753 aa17.43■□□□□ 0.38
HOXC11-202ENST00000546378 ATP8B2P98198 1209 aa17.42■□□□□ 0.38
HOXC11-202ENST00000546378 SRCAPQ6ZRS2 3230 aa17.42■□□□□ 0.38
HOXC11-202ENST00000546378 VGLL3A8MV65 326 aa17.42■□□□□ 0.38
HOXC11-202ENST00000546378 BECN2A8MW95 431 aa17.42■□□□□ 0.38
HOXC11-202ENST00000546378 CCDC192P0DO97 292 aa17.42■□□□□ 0.38
HOXC11-202ENST00000546378 ME3Q16798 604 aa17.42■□□□□ 0.38
HOXC11-202ENST00000546378 ARHGEF25Q86VW2 580 aa17.42■□□□□ 0.38
HOXC11-202ENST00000546378 TNNT1P13805 278 aa17.41■□□□□ 0.38
HOXC11-202ENST00000546378 MYRIPQ8NFW9 859 aa17.41■□□□□ 0.38
HOXC11-202ENST00000546378 PIBF1Q8WXW3 757 aa17.41■□□□□ 0.38
HOXC11-202ENST00000546378 CCDC94Q9BW85 323 aaPredicted RBP17.41■□□□□ 0.38
HOXC11-202ENST00000546378 PRDM11Q9NQV5 511 aa17.41■□□□□ 0.38
HOXC11-202ENST00000546378 GNAT3A8MTJ3 354 aa17.41■□□□□ 0.38
HOXC11-202ENST00000546378 UBE2HP62256 183 aa17.41■□□□□ 0.38
HOXC11-202ENST00000546378 A0A0G2JS52 829 aa17.41■□□□□ 0.38
HOXC11-202ENST00000546378 MCM2P49736 904 aa17.41■□□□□ 0.38
HOXC11-202ENST00000546378 GOLGA6L19H0YKK7 550 aa17.4■□□□□ 0.38
HOXC11-202ENST00000546378 LARP1Q6PKG0 1096 aaKnown RBP17.4■□□□□ 0.38
HOXC11-202ENST00000546378 TTC6Q86TZ1 520 aa17.4■□□□□ 0.38
HOXC11-202ENST00000546378 FAM184AQ8NB25 1140 aa17.4■□□□□ 0.38
HOXC11-202ENST00000546378 IGSF1Q8N6C5 1336 aa17.4■□□□□ 0.38
HOXC11-202ENST00000546378 ATP10DQ9P241 1426 aa17.4■□□□□ 0.38
HOXC11-202ENST00000546378 PIP4K2BP78356 416 aa17.4■□□□□ 0.38
HOXC11-202ENST00000546378 KCNF1Q9H3M0 494 aa17.4■□□□□ 0.38
HOXC11-202ENST00000546378 TLR7Q9NYK1 1049 aaKnown RBP17.4■□□□□ 0.38
HOXC11-202ENST00000546378 USP16Q9Y5T5 823 aa17.4■□□□□ 0.38
HOXC11-202ENST00000546378 MAP7D2Q96T17 732 aa17.39■□□□□ 0.38
HOXC11-202ENST00000546378 CHD2O14647 1828 aaKnown RBP17.39■□□□□ 0.37
HOXC11-202ENST00000546378 MAP3K11Q16584 847 aa17.39■□□□□ 0.37
HOXC11-202ENST00000546378 RBM8AQ9Y5S9 174 aaKnown RBP17.39■□□□□ 0.37
HOXC11-202ENST00000546378 PTPRCP08575 1304 aa17.39■□□□□ 0.37
HOXC11-202ENST00000546378 HSP90AB3PQ58FF7 597 aa17.39■□□□□ 0.37
HOXC11-202ENST00000546378 CCAR2Q8N163 923 aaKnown RBP17.39■□□□□ 0.37
HOXC11-202ENST00000546378 NEUROD6Q96NK8 337 aa17.39■□□□□ 0.37
HOXC11-202ENST00000546378 NALCNQ8IZF0 1738 aa17.39■□□□□ 0.37
HOXC11-202ENST00000546378 GOLGA6L6A8MZA4 724 aa17.38■□□□□ 0.37
HOXC11-202ENST00000546378 MON2Q7Z3U7 1717 aa17.38■□□□□ 0.37
HOXC11-202ENST00000546378 TYRO3Q06418 890 aa17.38■□□□□ 0.37
HOXC11-202ENST00000546378 ZRSR1Q15695 479 aaKnown RBP17.38■□□□□ 0.37
HOXC11-202ENST00000546378 SKIDA1Q1XH10 827 aa17.38■□□□□ 0.37
HOXC11-202ENST00000546378 C1orf141Q5JVX7 400 aa17.38■□□□□ 0.37
HOXC11-202ENST00000546378 OTUD7BQ6GQQ9 843 aa17.38■□□□□ 0.37
HOXC11-202ENST00000546378 RAPGEF4Q8WZA2 1011 aa17.38■□□□□ 0.37
HOXC11-202ENST00000546378 SEC62Q99442 399 aaKnown RBP17.38■□□□□ 0.37
HOXC11-202ENST00000546378 CLIP2Q9UDT6 1046 aa17.38■□□□□ 0.37
HOXC11-202ENST00000546378 PRDM4Q9UKN5 801 aa17.38■□□□□ 0.37
HOXC11-202ENST00000546378 TPCN1Q9ULQ1 816 aa17.38■□□□□ 0.37
HOXC11-202ENST00000546378 KRT85P78386 507 aa17.38■□□□□ 0.37
HOXC11-202ENST00000546378 SLC39A6Q13433 755 aa17.38■□□□□ 0.37
HOXC11-202ENST00000546378 IL17REQ8NFR9 667 aa17.38■□□□□ 0.37
HOXC11-202ENST00000546378 ATP6V1DQ9Y5K8 247 aa17.38■□□□□ 0.37
HOXC11-202ENST00000546378 ZNF165P49910 485 aa17.37■□□□□ 0.37
HOXC11-202ENST00000546378 ZNF142P52746 1687 aaPredicted RBP17.37■□□□□ 0.37
HOXC11-202ENST00000546378 SGSM2O43147 1006 aa17.37■□□□□ 0.37
HOXC11-202ENST00000546378 NR1I2O75469 434 aa17.37■□□□□ 0.37
HOXC11-202ENST00000546378 NMIQ13287 307 aaPredicted RBP17.37■□□□□ 0.37
HOXC11-202ENST00000546378 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.37■□□□□ 0.37
HOXC11-202ENST00000546378 HSPA4P34932 840 aa17.36■□□□□ 0.37
HOXC11-202ENST00000546378 PROSER3Q2NL68 480 aa17.36■□□□□ 0.37
HOXC11-202ENST00000546378 CHMP4CQ96CF2 233 aa17.36■□□□□ 0.37
HOXC11-202ENST00000546378 HS1BP3Q53T59 392 aa17.36■□□□□ 0.37
HOXC11-202ENST00000546378 NCOA5Q9HCD5 579 aaKnown RBP17.36■□□□□ 0.37
HOXC11-202ENST00000546378 ST7Q9NRC1 585 aa17.36■□□□□ 0.37
HOXC11-202ENST00000546378 TCHHQ07283 1943 aa17.36■□□□□ 0.37
HOXC11-202ENST00000546378 HMGN5P82970 282 aaKnown RBP17.36■□□□□ 0.37
HOXC11-202ENST00000546378 BLOC1S2Q6QNY1 142 aa17.36■□□□□ 0.37
HOXC11-202ENST00000546378 MTMR6Q9Y217 621 aa17.36■□□□□ 0.37
HOXC11-202ENST00000546378 MAP3K2Q9Y2U5 619 aa17.36■□□□□ 0.37
HOXC11-202ENST00000546378 EVA1CP58658 441 aa17.35■□□□□ 0.37
HOXC11-202ENST00000546378 G3BP1Q13283 466 aaKnown RBP eCLIP17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms