RNA–Protein interactions for RNA: ENST00000546120.2

UBC-213, Transcript of ubiquitin C, human

TSL 5 BASIC

Gene UBC, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBC-213	ENST00000546120	CLCN6	P51797	869 aa		11.9	□□□□□ -0.5
UBC-213	ENST00000546120	TRDN	Q13061	729 aa		11.9	□□□□□ -0.5
UBC-213	ENST00000546120	LARP1B	Q659C4	914 aa	Known RBP	11.9	□□□□□ -0.5
UBC-213	ENST00000546120	ZNF592	Q92610	1267 aa		11.9	□□□□□ -0.5
UBC-213	ENST00000546120	RABGGTA	Q92696	567 aa		11.9	□□□□□ -0.5
UBC-213	ENST00000546120	ERCC4	Q92889	916 aa	Predicted RBP	11.9	□□□□□ -0.5
UBC-213	ENST00000546120	ORC3	Q9UBD5	711 aa	Predicted RBP	11.9	□□□□□ -0.5
UBC-213	ENST00000546120	SNX14	Q9Y5W7	946 aa		11.9	□□□□□ -0.5
UBC-213	ENST00000546120	LRRFIP2	Q9Y608	721 aa	Known RBP	11.9	□□□□□ -0.5
UBC-213	ENST00000546120	PPL	O60437	1756 aa		11.9	□□□□□ -0.51
UBC-213	ENST00000546120	PXDNL	A1KZ92	1463 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	CCDC151	A5D8V7	595 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	ERICH4	A6NGS2	130 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	CCDC69	A6NI79	296 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	CBFA2T2	O43439	604 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	ERLIN1	O75477	346 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	CAST	P20810	708 aa	Known RBP	11.89	□□□□□ -0.51
UBC-213	ENST00000546120	PLA2G4A	P47712	749 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	AK2	P54819	239 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	CCZ1B	P86790	482 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	CCZ1	P86791	482 aa	Predicted RBP	11.89	□□□□□ -0.51
UBC-213	ENST00000546120	DNM1	Q05193	864 aa	Known RBP	11.89	□□□□□ -0.51
UBC-213	ENST00000546120	IQCB1	Q15051	598 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	ARHGAP29	Q52LW3	1261 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	KRBA2	Q6ZNG9	492 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	SRL	Q86TD4	932 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	LUZP1	Q86V48	1076 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	GPATCH3	Q96I76	525 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	PDRG1	Q9NUG6	133 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	ZNF446	Q9NWS9	450 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	DACT1	Q9NYF0	836 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	ARHGEF40	Q8TER5	1519 aa		11.89	□□□□□ -0.51
UBC-213	ENST00000546120	ABCC3	O15438	1527 aa		11.88	□□□□□ -0.51
UBC-213	ENST00000546120	CP	P00450	1065 aa		11.88	□□□□□ -0.51
UBC-213	ENST00000546120	SFPQ	P23246	707 aa	Known RBP eCLIP	11.88	□□□□□ -0.51
UBC-213	ENST00000546120	KRT32	Q14532	448 aa		11.88	□□□□□ -0.51
UBC-213	ENST00000546120	TTC31	Q49AM3	519 aa	Predicted RBP	11.88	□□□□□ -0.51
UBC-213	ENST00000546120	TSPYL6	Q8N831	410 aa		11.88	□□□□□ -0.51
UBC-213	ENST00000546120	CCDC191	Q8NCU4	936 aa		11.88	□□□□□ -0.51
UBC-213	ENST00000546120	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	11.88	□□□□□ -0.51
UBC-213	ENST00000546120	HMG20B	Q9P0W2	317 aa		11.88	□□□□□ -0.51
UBC-213	ENST00000546120	PALD1	Q9ULE6	856 aa		11.88	□□□□□ -0.51
UBC-213	ENST00000546120	MAP3K5	Q99683	1374 aa		11.88	□□□□□ -0.51
UBC-213	ENST00000546120	RICTOR	Q6R327	1708 aa		11.88	□□□□□ -0.51
UBC-213	ENST00000546120	AK9	Q5TCS8	1911 aa		11.88	□□□□□ -0.51
UBC-213	ENST00000546120	YTHDC2	Q9H6S0	1430 aa	Known RBP	11.87	□□□□□ -0.51
UBC-213	ENST00000546120	CCDC196	A0A1B0GTZ2	297 aa		11.87	□□□□□ -0.51
UBC-213	ENST00000546120	KIF3B	O15066	747 aa		11.87	□□□□□ -0.51
UBC-213	ENST00000546120	MCM3	P25205	808 aa		11.87	□□□□□ -0.51
UBC-213	ENST00000546120	IL13	P35225	146 aa		11.87	□□□□□ -0.51
UBC-213	ENST00000546120	LRMP	Q12912	555 aa		11.87	□□□□□ -0.51
UBC-213	ENST00000546120	SMC1A	Q14683	1233 aa	Known RBP	11.87	□□□□□ -0.51
UBC-213	ENST00000546120	TSGA10IP	Q3SY00	556 aa		11.87	□□□□□ -0.51
UBC-213	ENST00000546120	RUFY3	Q7L099	469 aa		11.87	□□□□□ -0.51
UBC-213	ENST00000546120	EFCAB13	Q8IY85	973 aa		11.87	□□□□□ -0.51
UBC-213	ENST00000546120	C8orf58	Q8NAV2	365 aa		11.87	□□□□□ -0.51
UBC-213	ENST00000546120	RILPL2	Q969X0	211 aa		11.87	□□□□□ -0.51
UBC-213	ENST00000546120	LLPH	Q9BRT6	129 aa	Known RBP	11.87	□□□□□ -0.51
UBC-213	ENST00000546120	BCCIP	Q9P287	314 aa	Known RBP eCLIP	11.87	□□□□□ -0.51
UBC-213	ENST00000546120	JRKL	Q9Y4A0	524 aa		11.87	□□□□□ -0.51
UBC-213	ENST00000546120	PLEKHG2	Q9H7P9	1386 aa		11.87	□□□□□ -0.51
UBC-213	ENST00000546120	GLRX3	O76003	335 aa	Known RBP	11.86	□□□□□ -0.51
UBC-213	ENST00000546120	BRD2	P25440	801 aa	Known RBP	11.86	□□□□□ -0.51
UBC-213	ENST00000546120	SRPK2	P78362	688 aa	Known RBP	11.86	□□□□□ -0.51
UBC-213	ENST00000546120	CCDC73	Q6ZRK6	1079 aa		11.86	□□□□□ -0.51
UBC-213	ENST00000546120	TTC6	Q86TZ1	520 aa		11.86	□□□□□ -0.51
UBC-213	ENST00000546120	OTUD7A	Q8TE49	926 aa	Predicted RBP	11.86	□□□□□ -0.51
UBC-213	ENST00000546120	LEO1	Q8WVC0	666 aa	Predicted RBP	11.86	□□□□□ -0.51
UBC-213	ENST00000546120	ZNF396	Q96N95	335 aa	Predicted RBP	11.86	□□□□□ -0.51
UBC-213	ENST00000546120	UPF3B	Q9BZI7	483 aa	Known RBP	11.86	□□□□□ -0.51
UBC-213	ENST00000546120	LSG1	Q9H089	658 aa	Known RBP	11.86	□□□□□ -0.51
UBC-213	ENST00000546120	GGNBP2	Q9H3C7	697 aa		11.86	□□□□□ -0.51
UBC-213	ENST00000546120	MED4	Q9NPJ6	270 aa		11.86	□□□□□ -0.51
UBC-213	ENST00000546120	SNRK	Q9NRH2	765 aa		11.86	□□□□□ -0.51
UBC-213	ENST00000546120	POLK	Q9UBT6	870 aa		11.86	□□□□□ -0.51
UBC-213	ENST00000546120	RRP15	Q9Y3B9	282 aa	Known RBP	11.86	□□□□□ -0.51
UBC-213	ENST00000546120	KNDC1	Q76NI1	1749 aa		11.86	□□□□□ -0.51
UBC-213	ENST00000546120	HECW2	Q9P2P5	1572 aa		11.85	□□□□□ -0.51
UBC-213	ENST00000546120	MSH6	P52701	1360 aa		11.85	□□□□□ -0.51
UBC-213	ENST00000546120	SMC2	O95347	1197 aa		11.85	□□□□□ -0.51
UBC-213	ENST00000546120	KCNA4	P22459	653 aa		11.85	□□□□□ -0.51
UBC-213	ENST00000546120	EIF5	P55010	431 aa	Known RBP	11.85	□□□□□ -0.51
UBC-213	ENST00000546120	ERCC6L	Q2NKX8	1250 aa		11.85	□□□□□ -0.51
UBC-213	ENST00000546120	SYT10	Q6XYQ8	523 aa		11.85	□□□□□ -0.51
UBC-213	ENST00000546120	HDX	Q7Z353	690 aa		11.85	□□□□□ -0.51
UBC-213	ENST00000546120	DNAAF4	Q8WXU2	420 aa		11.85	□□□□□ -0.51
UBC-213	ENST00000546120	STK31	Q9BXU1	1019 aa		11.85	□□□□□ -0.51
UBC-213	ENST00000546120	SLC52A1	Q9NWF4	448 aa		11.85	□□□□□ -0.51
UBC-213	ENST00000546120	ARHGEF28	Q8N1W1	1705 aa	Known RBP	11.85	□□□□□ -0.51
UBC-213	ENST00000546120	MROH1	Q8NDA8	1641 aa		11.85	□□□□□ -0.51
UBC-213	ENST00000546120	VPS37C	A5D8V6	355 aa	Predicted RBP	11.84	□□□□□ -0.51
UBC-213	ENST00000546120	IKBKB	O14920	756 aa		11.84	□□□□□ -0.51
UBC-213	ENST00000546120	KIN	O60870	393 aa	Known RBP	11.84	□□□□□ -0.51
UBC-213	ENST00000546120	TADA3	O75528	432 aa		11.84	□□□□□ -0.51
UBC-213	ENST00000546120	ATP2B1	P20020	1258 aa		11.84	□□□□□ -0.51
UBC-213	ENST00000546120	NAA16	Q6N069	864 aa	Predicted RBP	11.84	□□□□□ -0.51
UBC-213	ENST00000546120	CC2D1A	Q6P1N0	951 aa	Predicted RBP	11.84	□□□□□ -0.51
UBC-213	ENST00000546120	ERC1	Q8IUD2	1116 aa		11.84	□□□□□ -0.51
UBC-213	ENST00000546120	PLCD3	Q8N3E9	789 aa		11.84	□□□□□ -0.51
UBC-213	ENST00000546120	MPND	Q8N594	471 aa		11.84	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms