RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 LINS1Q8NG48 757 aa18.92■□□□□ 0.62
LDLR-204ENST00000545707 CHMP3Q9Y3E7 222 aa18.92■□□□□ 0.62
LDLR-204ENST00000545707 IGKV5-2P06315 115 aa18.92■□□□□ 0.62
LDLR-204ENST00000545707 ERC1Q8IUD2 1116 aa18.92■□□□□ 0.62
LDLR-204ENST00000545707 ZKSCAN1P17029 563 aaPredicted RBP18.91■□□□□ 0.62
LDLR-204ENST00000545707 PDIA6Q15084 440 aa18.91■□□□□ 0.62
LDLR-204ENST00000545707 ADCY5O95622 1261 aa18.91■□□□□ 0.62
LDLR-204ENST00000545707 RIC3Q7Z5B4 369 aa18.91■□□□□ 0.62
LDLR-204ENST00000545707 MCM5P33992 734 aa18.9■□□□□ 0.62
LDLR-204ENST00000545707 EPHA10Q5JZY3 1008 aa18.9■□□□□ 0.62
LDLR-204ENST00000545707 ANKLE2Q86XL3 938 aa18.9■□□□□ 0.62
LDLR-204ENST00000545707 FSD1Q9BTV5 496 aa18.9■□□□□ 0.62
LDLR-204ENST00000545707 NDUFB9Q9Y6M9 179 aa18.9■□□□□ 0.62
LDLR-204ENST00000545707 UQCRHLA0A096LP55 91 aa18.9■□□□□ 0.62
LDLR-204ENST00000545707 SLC27A2O14975 620 aa18.9■□□□□ 0.62
LDLR-204ENST00000545707 UQCRHP07919 91 aa18.9■□□□□ 0.62
LDLR-204ENST00000545707 C17orf53Q8N3J3 647 aaPredicted RBP18.9■□□□□ 0.62
LDLR-204ENST00000545707 MAP4K1Q92918 833 aa18.9■□□□□ 0.62
LDLR-204ENST00000545707 TM6SF1Q9BZW5 370 aa18.9■□□□□ 0.62
LDLR-204ENST00000545707 TTC12Q9H892 705 aaPredicted RBP18.9■□□□□ 0.62
LDLR-204ENST00000545707 FAM13BQ9NYF5 915 aa18.9■□□□□ 0.62
LDLR-204ENST00000545707 USP54Q70EL1 1684 aa18.89■□□□□ 0.62
LDLR-204ENST00000545707 CHGBP05060 677 aa18.89■□□□□ 0.61
LDLR-204ENST00000545707 KCNB2Q92953 911 aa18.89■□□□□ 0.61
LDLR-204ENST00000545707 DDX21Q9NR30 783 aaKnown RBP eCLIP18.89■□□□□ 0.61
LDLR-204ENST00000545707 ATP6V1DQ9Y5K8 247 aa18.89■□□□□ 0.61
LDLR-204ENST00000545707 HEG1Q9ULI3 1381 aa18.89■□□□□ 0.61
LDLR-204ENST00000545707 ZC3H6P61129 1189 aaKnown RBP18.89■□□□□ 0.61
LDLR-204ENST00000545707 ZNF589Q86UQ0 364 aaPredicted RBP18.89■□□□□ 0.61
LDLR-204ENST00000545707 ZSCAN31Q96LW9 406 aaPredicted RBP18.89■□□□□ 0.61
LDLR-204ENST00000545707 FER1L4A9Z1Z3 1794 aa18.88■□□□□ 0.61
LDLR-204ENST00000545707 STK3Q13188 491 aa18.88■□□□□ 0.61
LDLR-204ENST00000545707 LARP1BQ659C4 914 aaKnown RBP18.88■□□□□ 0.61
LDLR-204ENST00000545707 SH2B1Q9NRF2 756 aaPredicted RBP18.88■□□□□ 0.61
LDLR-204ENST00000545707 CDC37L1Q7L3B6 337 aa18.88■□□□□ 0.61
LDLR-204ENST00000545707 FAM184AQ8NB25 1140 aa18.88■□□□□ 0.61
LDLR-204ENST00000545707 DDX58O95786 925 aaKnown RBP18.87■□□□□ 0.61
LDLR-204ENST00000545707 CRYBG1Q9Y4K1 1723 aa18.87■□□□□ 0.61
LDLR-204ENST00000545707 AP5Z1O43299 807 aa18.86■□□□□ 0.61
LDLR-204ENST00000545707 CSPP1Q1MSJ5 1256 aa18.86■□□□□ 0.61
LDLR-204ENST00000545707 XAGE3Q8WTP9 111 aa18.86■□□□□ 0.61
LDLR-204ENST00000545707 MYD88Q99836 296 aa18.86■□□□□ 0.61
LDLR-204ENST00000545707 KIAA2012Q0VF49 1180 aa18.86■□□□□ 0.61
LDLR-204ENST00000545707 UVSSAQ2YD98 709 aa18.86■□□□□ 0.61
LDLR-204ENST00000545707 COPS6Q7L5N1 327 aa18.86■□□□□ 0.61
LDLR-204ENST00000545707 NFATC2IPQ8NCF5 419 aa18.86■□□□□ 0.61
LDLR-204ENST00000545707 TTC6Q86TZ1 520 aa18.85■□□□□ 0.61
LDLR-204ENST00000545707 FUCA2Q9BTY2 467 aa18.85■□□□□ 0.61
LDLR-204ENST00000545707 LMO7Q8WWI1 1683 aa18.85■□□□□ 0.61
LDLR-204ENST00000545707 LETM1O95202 739 aaPredicted RBP18.85■□□□□ 0.61
LDLR-204ENST00000545707 TERF1P54274 439 aa18.85■□□□□ 0.61
LDLR-204ENST00000545707 CAMK4Q16566 473 aa18.85■□□□□ 0.61
LDLR-204ENST00000545707 ZNF790Q6PG37 636 aa18.85■□□□□ 0.61
LDLR-204ENST00000545707 CCDC9Q9Y3X0 531 aaKnown RBP18.85■□□□□ 0.61
LDLR-204ENST00000545707 UTYO14607 1347 aa18.85■□□□□ 0.61
LDLR-204ENST00000545707 NEURL1BA8MQ27 555 aa18.84■□□□□ 0.61
LDLR-204ENST00000545707 BLOC1S2Q6QNY1 142 aa18.84■□□□□ 0.61
LDLR-204ENST00000545707 TFIP11Q9UBB9 837 aaKnown RBP18.84■□□□□ 0.61
LDLR-204ENST00000545707 HDAC5Q9UQL6 1122 aa18.84■□□□□ 0.61
LDLR-204ENST00000545707 KDM4AO75164 1064 aa18.84■□□□□ 0.61
LDLR-204ENST00000545707 DNTTIP2Q5QJE6 756 aaKnown RBP18.84■□□□□ 0.61
LDLR-204ENST00000545707 GCKRQ14397 625 aa18.83■□□□□ 0.61
LDLR-204ENST00000545707 VSIG10Q8N0Z9 540 aa18.83■□□□□ 0.61
LDLR-204ENST00000545707 LIG1P18858 919 aa18.83■□□□□ 0.6
LDLR-204ENST00000545707 TOB2Q14106 344 aaPredicted RBP18.83■□□□□ 0.6
LDLR-204ENST00000545707 LARP1Q6PKG0 1096 aaKnown RBP18.83■□□□□ 0.6
LDLR-204ENST00000545707 PDCL3Q9H2J4 239 aa18.83■□□□□ 0.6
LDLR-204ENST00000545707 NLRP2Q9NX02 1062 aa18.83■□□□□ 0.6
LDLR-204ENST00000545707 HIP1O00291 1037 aa18.82■□□□□ 0.6
LDLR-204ENST00000545707 PSMA5P28066 241 aa18.82■□□□□ 0.6
LDLR-204ENST00000545707 NEXNQ0ZGT2 675 aa18.82■□□□□ 0.6
LDLR-204ENST00000545707 CCDC129Q6ZRS4 1044 aa18.82■□□□□ 0.6
LDLR-204ENST00000545707 ARID3AQ99856 593 aa18.82■□□□□ 0.6
LDLR-204ENST00000545707 USP16Q9Y5T5 823 aa18.82■□□□□ 0.6
LDLR-204ENST00000545707 NPHP4O75161 1426 aaPredicted RBP18.82■□□□□ 0.6
LDLR-204ENST00000545707 ADGRL3Q9HAR2 1447 aa18.82■□□□□ 0.6
LDLR-204ENST00000545707 RPS6KB1P23443 525 aa18.82■□□□□ 0.6
LDLR-204ENST00000545707 GLIPR1L2Q4G1C9 344 aa18.82■□□□□ 0.6
LDLR-204ENST00000545707 KRT28Q7Z3Y7 464 aa18.82■□□□□ 0.6
LDLR-204ENST00000545707 ZNF496Q96IT1 587 aaPredicted RBP18.82■□□□□ 0.6
LDLR-204ENST00000545707 SEC62Q99442 399 aaKnown RBP18.82■□□□□ 0.6
LDLR-204ENST00000545707 NCAPD2Q15021 1401 aa18.81■□□□□ 0.6
LDLR-204ENST00000545707 ATP5J2-PTCD1G3V325 749 aa18.81■□□□□ 0.6
LDLR-204ENST00000545707 PTCD1O75127 700 aaKnown RBP18.81■□□□□ 0.6
LDLR-204ENST00000545707 TFCP2Q12800 502 aa18.81■□□□□ 0.6
LDLR-204ENST00000545707 DBNLQ9UJU6 430 aaKnown RBP18.81■□□□□ 0.6
LDLR-204ENST00000545707 SASS6Q6UVJ0 657 aa18.81■□□□□ 0.6
LDLR-204ENST00000545707 SPC24Q8NBT2 197 aa18.81■□□□□ 0.6
LDLR-204ENST00000545707 TAF5LO75529 589 aa18.8■□□□□ 0.6
LDLR-204ENST00000545707 KRT85P78386 507 aa18.8■□□□□ 0.6
LDLR-204ENST00000545707 NOLC1Q14978 699 aaKnown RBP eCLIP18.8■□□□□ 0.69e-6■□□□□ 9.6
LDLR-204ENST00000545707 RNF20Q5VTR2 975 aa18.8■□□□□ 0.6
LDLR-204ENST00000545707 COL15A1P39059 1388 aa18.8■□□□□ 0.6
LDLR-204ENST00000545707 JAK2O60674 1132 aa18.8■□□□□ 0.6
LDLR-204ENST00000545707 CKAP2LQ8IYA6 745 aa18.8■□□□□ 0.6
LDLR-204ENST00000545707 TSC1Q92574 1164 aa18.8■□□□□ 0.6
LDLR-204ENST00000545707 DDX17Q92841 729 aaKnown RBP18.8■□□□□ 0.6
LDLR-204ENST00000545707 DNAJC2Q99543 621 aaKnown RBP18.8■□□□□ 0.6
LDLR-204ENST00000545707 SLC52A2Q9HAB3 445 aa18.8■□□□□ 0.6
LDLR-204ENST00000545707 MED23Q9ULK4 1368 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms