RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 GRIPAP1Q4V328 841 aa15.21■□□□□ 0.03
HDAC4-216ENST00000544989 NUTM1Q86Y26 1132 aa15.21■□□□□ 0.03
HDAC4-216ENST00000544989 C8orf58Q8NAV2 365 aa15.21■□□□□ 0.03
HDAC4-216ENST00000544989 RPGRQ92834 1020 aaKnown RBP15.21■□□□□ 0.03
HDAC4-216ENST00000544989 NLRP3Q96P20 1036 aa15.21■□□□□ 0.03
HDAC4-216ENST00000544989 RNF181Q9P0P0 153 aa15.21■□□□□ 0.03
HDAC4-216ENST00000544989 COL11A2P13942 1736 aaPredicted RBP15.2■□□□□ 0.02
HDAC4-216ENST00000544989 LTBP3Q9NS15 1303 aa15.2■□□□□ 0.02
HDAC4-216ENST00000544989 C21orf2O43822 256 aa15.2■□□□□ 0.02
HDAC4-216ENST00000544989 HSP90B1P14625 803 aaKnown RBP15.2■□□□□ 0.02
HDAC4-216ENST00000544989 SLC10A5Q5PT55 438 aa15.2■□□□□ 0.02
HDAC4-216ENST00000544989 NLRP10Q86W26 655 aa15.2■□□□□ 0.02
HDAC4-216ENST00000544989 TSR2Q969E8 191 aaKnown RBP15.2■□□□□ 0.02
HDAC4-216ENST00000544989 RBM17Q96I25 401 aaKnown RBP15.2■□□□□ 0.02
HDAC4-216ENST00000544989 MYH16Q9H6N6 1097 aa15.2■□□□□ 0.02
HDAC4-216ENST00000544989 CCER2I3L3R5 266 aa15.19■□□□□ 0.02
HDAC4-216ENST00000544989 HOXA10P31260 410 aaPredicted RBP15.19■□□□□ 0.02
HDAC4-216ENST00000544989 TRIM28Q13263 835 aaKnown RBP15.19■□□□□ 0.02
HDAC4-216ENST00000544989 TWISTNBQ3B726 338 aaPredicted RBP15.19■□□□□ 0.02
HDAC4-216ENST00000544989 CCDC93Q567U6 631 aa15.19■□□□□ 0.02
HDAC4-216ENST00000544989 CC2D2BQ6DHV5 1058 aa15.19■□□□□ 0.02
HDAC4-216ENST00000544989 RIC3Q7Z5B4 369 aa15.19■□□□□ 0.02
HDAC4-216ENST00000544989 RTKN2Q8IZC4 609 aa15.19■□□□□ 0.02
HDAC4-216ENST00000544989 TAOK3Q9H2K8 898 aa15.19■□□□□ 0.02
HDAC4-216ENST00000544989 TRMT112Q9UI30 125 aaKnown RBP15.19■□□□□ 0.02
HDAC4-216ENST00000544989 ABCC12Q96J65 1359 aa15.19■□□□□ 0.02
HDAC4-216ENST00000544989 ARFGEF2Q9Y6D5 1785 aa15.19■□□□□ 0.02
HDAC4-216ENST00000544989 KDM2BQ8NHM5 1336 aa15.18■□□□□ 0.02
HDAC4-216ENST00000544989 SH3TC1Q8TE82 1336 aa15.18■□□□□ 0.02
HDAC4-216ENST00000544989 TOMM70O94826 608 aa15.18■□□□□ 0.02
HDAC4-216ENST00000544989 JMYQ8N9B5 988 aa15.18■□□□□ 0.02
HDAC4-216ENST00000544989 CRAMP1Q96RY5 1269 aa15.18■□□□□ 0.02
HDAC4-216ENST00000544989 TMX4Q9H1E5 349 aaPredicted RBP15.18■□□□□ 0.02
HDAC4-216ENST00000544989 FANCIQ9NVI1 1328 aa15.17■□□□□ 0.02
HDAC4-216ENST00000544989 WDR90Q96KV7 1748 aa15.17■□□□□ 0.02
HDAC4-216ENST00000544989 ANKRD36CQ5JPF3 1778 aa15.17■□□□□ 0.02
HDAC4-216ENST00000544989 NFKBIEO00221 500 aa15.17■□□□□ 0.02
HDAC4-216ENST00000544989 RASSF7Q02833 373 aa15.17■□□□□ 0.02
HDAC4-216ENST00000544989 TSPYL6Q8N831 410 aa15.17■□□□□ 0.02
HDAC4-216ENST00000544989 C7orf43Q8WVR3 580 aa15.17■□□□□ 0.02
HDAC4-216ENST00000544989 ISCA1Q9BUE6 129 aa15.17■□□□□ 0.02
HDAC4-216ENST00000544989 SALL2Q9Y467 1007 aaPredicted RBP15.17■□□□□ 0.02
HDAC4-216ENST00000544989 SLX4Q8IY92 1834 aa15.16■□□□□ 0.02
HDAC4-216ENST00000544989 ZNF526Q8TF50 670 aaPredicted RBP15.16■□□□□ 0.02
HDAC4-216ENST00000544989 ZNF219Q9P2Y4 722 aaPredicted RBP15.16■□□□□ 0.02
HDAC4-216ENST00000544989 SBF1O95248 1867 aa15.16■□□□□ 0.02
HDAC4-216ENST00000544989 PHAXQ9H814 394 aaKnown RBP15.15■□□□□ 0.02
HDAC4-216ENST00000544989 FKBP4Q02790 459 aaKnown RBP eCLIP15.14■□□□□ 0.011e-6■■■■■ 33.9
HDAC4-216ENST00000544989 NEXNQ0ZGT2 675 aa15.14■□□□□ 0.01
HDAC4-216ENST00000544989 DPY19L2Q6NUT2 758 aa15.14■□□□□ 0.01
HDAC4-216ENST00000544989 KSR2Q6VAB6 950 aa15.14■□□□□ 0.01
HDAC4-216ENST00000544989 TMC4Q7Z404 712 aa15.14■□□□□ 0.01
HDAC4-216ENST00000544989 CCDC191Q8NCU4 936 aa15.14■□□□□ 0.01
HDAC4-216ENST00000544989 FER1L6Q2WGJ9 1857 aa15.14■□□□□ 0.01
HDAC4-216ENST00000544989 ATP5J2-PTCD1G3V325 749 aa15.13■□□□□ 0.01
HDAC4-216ENST00000544989 BBOX1O75936 387 aa15.13■□□□□ 0.01
HDAC4-216ENST00000544989 SLC4A2P04920 1241 aa15.13■□□□□ 0.01
HDAC4-216ENST00000544989 DDX46Q7L014 1031 aaKnown RBP15.13■□□□□ 0.01
HDAC4-216ENST00000544989 PSMD1Q99460 953 aa15.13■□□□□ 0.01
HDAC4-216ENST00000544989 METTL22Q9BUU2 404 aaPredicted RBP15.13■□□□□ 0.01
HDAC4-216ENST00000544989 TNRC6CQ9HCJ0 1690 aaKnown RBP15.12■□□□□ 0.01
HDAC4-216ENST00000544989 GLTPD2A6NH11 291 aa15.12■□□□□ 0.01
HDAC4-216ENST00000544989 PPEF1O14829 653 aaPredicted RBP15.12■□□□□ 0.01
HDAC4-216ENST00000544989 ZBTB38Q8NAP3 1195 aaPredicted RBP15.12■□□□□ 0.01
HDAC4-216ENST00000544989 MYD88Q99836 296 aa15.12■□□□□ 0.01
HDAC4-216ENST00000544989 CWC25Q9NXE8 425 aaPredicted RBP15.12■□□□□ 0.01
HDAC4-216ENST00000544989 CACNA1FO60840 1977 aa15.12■□□□□ 0.01
HDAC4-216ENST00000544989 ZNF521Q96K83 1311 aa15.12■□□□□ 0.01
HDAC4-216ENST00000544989 VAMP4O75379 141 aa15.11■□□□□ 0.01
HDAC4-216ENST00000544989 HCLS1P14317 486 aaPredicted RBP15.11■□□□□ 0.01
HDAC4-216ENST00000544989 EXOSC9Q06265 439 aaKnown RBP15.11■□□□□ 0.01
HDAC4-216ENST00000544989 COL13A1Q5TAT6 717 aaPredicted RBP15.11■□□□□ 0.01
HDAC4-216ENST00000544989 C16orf71Q8IYS4 520 aaPredicted RBP15.11■□□□□ 0.01
HDAC4-216ENST00000544989 RBM46Q8TBY0 533 aaKnown RBP15.11■□□□□ 0.01
HDAC4-216ENST00000544989 MAP3K2Q9Y2U5 619 aa15.11■□□□□ 0.01
HDAC4-216ENST00000544989 CACNA1SQ13698 1873 aa15.1■□□□□ 0.01
HDAC4-216ENST00000544989 PI4KAP2A4QPH2 592 aa15.1■□□□□ 0.01
HDAC4-216ENST00000544989 E9PSI1 815 aa15.1■□□□□ 0.01
HDAC4-216ENST00000544989 IRS4O14654 1257 aaPredicted RBP15.1■□□□□ 0.01
HDAC4-216ENST00000544989 PCCAP05165 728 aaPredicted RBP15.1■□□□□ 0.01
HDAC4-216ENST00000544989 FLIIQ13045 1269 aa15.1■□□□□ 0.01
HDAC4-216ENST00000544989 SF3B3Q15393 1217 aaKnown RBP15.1■□□□□ 0.01
HDAC4-216ENST00000544989 PI4KAP1Q8N8J0 262 aa15.1■□□□□ 0.01
HDAC4-216ENST00000544989 KLRG1Q96E93 195 aa15.1■□□□□ 0.01
HDAC4-216ENST00000544989 FAM89AQ96GI7 184 aa15.1■□□□□ 0.01
HDAC4-216ENST00000544989 VPS33BQ9H267 617 aa15.1■□□□□ 0.01
HDAC4-216ENST00000544989 ATP6V0A2Q9Y487 856 aa15.1■□□□□ 0.01
HDAC4-216ENST00000544989 ABCC4O15439 1325 aa15.1■□□□□ 0.01
HDAC4-216ENST00000544989 PRELPP51888 382 aa15.09■□□□□ 0.01
HDAC4-216ENST00000544989 GRAPQ13588 217 aa15.09■□□□□ 0.01
HDAC4-216ENST00000544989 C3orf67Q6ZVT6 689 aa15.09■□□□□ 0.01
HDAC4-216ENST00000544989 SUPT20HQ8NEM7 779 aa15.09■□□□□ 0.01
HDAC4-216ENST00000544989 GRAPLQ8TC17 118 aaPredicted RBP15.09■□□□□ 0.01
HDAC4-216ENST00000544989 DICER1Q9UPY3 1922 aaKnown RBP15.09■□□□□ 0.01
HDAC4-216ENST00000544989 VEGFAP15692 232 aaPredicted RBP15.08■□□□□ 0
HDAC4-216ENST00000544989 FKBP5Q13451 457 aaPredicted RBP15.08■□□□□ 0
HDAC4-216ENST00000544989 SP8Q8IXZ3 490 aa15.08■□□□□ 0
HDAC4-216ENST00000544989 SYNE4Q8N205 404 aa15.08■□□□□ 0
HDAC4-216ENST00000544989 JDP2Q8WYK2 163 aa15.08■□□□□ 0
HDAC4-216ENST00000544989 ZNF428Q96B54 188 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms