RNA–Protein interactions for RNA: ENST00000544093.5

CHFR-222, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 942 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-222ENST00000544093 ELL2O00472 640 aaPredicted RBP30.03■■■□□ 2.4
CHFR-222ENST00000544093 ZNF526Q8TF50 670 aaPredicted RBP30.03■■■□□ 2.4
CHFR-222ENST00000544093 LTBP3Q9NS15 1303 aa30.02■■■□□ 2.4
CHFR-222ENST00000544093 RASSF7Q02833 373 aa30.02■■■□□ 2.4
CHFR-222ENST00000544093 NLRP10Q86W26 655 aa30.01■■■□□ 2.39
CHFR-222ENST00000544093 RPGRQ92834 1020 aaKnown RBP30.01■■■□□ 2.39
CHFR-222ENST00000544093 TSR2Q969E8 191 aaKnown RBP30.01■■■□□ 2.39
CHFR-222ENST00000544093 CCDC88AQ3V6T2 1871 aa30■■■□□ 2.39
CHFR-222ENST00000544093 NFKBIEO00221 500 aa30■■■□□ 2.39
CHFR-222ENST00000544093 GOLGA2Q08379 1002 aa30■■■□□ 2.39
CHFR-222ENST00000544093 SLC10A5Q5PT55 438 aa30■■■□□ 2.39
CHFR-222ENST00000544093 TAOK3Q9H2K8 898 aa30■■■□□ 2.39
CHFR-222ENST00000544093 HOXA10P31260 410 aaPredicted RBP29.99■■■□□ 2.39
CHFR-222ENST00000544093 C1QTNF8P60827 252 aa29.99■■■□□ 2.39
CHFR-222ENST00000544093 NLRP3Q96P20 1036 aa29.99■■■□□ 2.39
CHFR-222ENST00000544093 ZNF219Q9P2Y4 722 aaPredicted RBP29.99■■■□□ 2.39
CHFR-222ENST00000544093 CCDC93Q567U6 631 aa29.98■■■□□ 2.39
CHFR-222ENST00000544093 C7orf43Q8WVR3 580 aa29.98■■■□□ 2.39
CHFR-222ENST00000544093 KDM2BQ8NHM5 1336 aa29.97■■■□□ 2.39
CHFR-222ENST00000544093 DICER1Q9UPY3 1922 aaKnown RBP29.97■■■□□ 2.39
CHFR-222ENST00000544093 SENP3-EIF4A1A0A087X0R7 540 aa29.97■■■□□ 2.39
CHFR-222ENST00000544093 SH3TC1Q8TE82 1336 aa29.96■■■□□ 2.39
CHFR-222ENST00000544093 DDX58O95786 925 aaKnown RBP29.96■■■□□ 2.39
CHFR-222ENST00000544093 TWISTNBQ3B726 338 aaPredicted RBP29.96■■■□□ 2.39
CHFR-222ENST00000544093 TSPYL6Q8N831 410 aa29.96■■■□□ 2.39
CHFR-222ENST00000544093 RBM17Q96I25 401 aaKnown RBP29.96■■■□□ 2.39
CHFR-222ENST00000544093 STK31Q9BXU1 1019 aa29.96■■■□□ 2.39
CHFR-222ENST00000544093 TRMT112Q9UI30 125 aaKnown RBP29.96■■■□□ 2.39
CHFR-222ENST00000544093 RIC3Q7Z5B4 369 aa29.95■■■□□ 2.39
CHFR-222ENST00000544093 RTKN2Q8IZC4 609 aa29.95■■■□□ 2.39
CHFR-222ENST00000544093 ISCA1Q9BUE6 129 aa29.95■■■□□ 2.39
CHFR-222ENST00000544093 TIAM2Q8IVF5 1701 aa29.95■■■□□ 2.38
CHFR-222ENST00000544093 FANCIQ9NVI1 1328 aa29.95■■■□□ 2.38
CHFR-222ENST00000544093 TRIM28Q13263 835 aaKnown RBP29.94■■■□□ 2.38
CHFR-222ENST00000544093 CC2D2BQ6DHV5 1058 aa29.94■■■□□ 2.38
CHFR-222ENST00000544093 CRAMP1Q96RY5 1269 aa29.94■■■□□ 2.38
CHFR-222ENST00000544093 SALL2Q9Y467 1007 aaPredicted RBP29.94■■■□□ 2.38
CHFR-222ENST00000544093 GRIPAP1Q4V328 841 aa29.93■■■□□ 2.38
CHFR-222ENST00000544093 CACNA1FO60840 1977 aa29.92■■■□□ 2.38
CHFR-222ENST00000544093 PHAXQ9H814 394 aaKnown RBP29.92■■■□□ 2.38
CHFR-222ENST00000544093 PRELPP51888 382 aa29.91■■■□□ 2.38
CHFR-222ENST00000544093 MYH16Q9H6N6 1097 aa29.91■■■□□ 2.38
CHFR-222ENST00000544093 KIF3CO14782 793 aa29.89■■■□□ 2.38
CHFR-222ENST00000544093 FKBP4Q02790 459 aaKnown RBP eCLIP29.89■■■□□ 2.38
CHFR-222ENST00000544093 LAMB2P55268 1798 aa29.89■■■□□ 2.38
CHFR-222ENST00000544093 ATP5J2-PTCD1G3V325 749 aa29.88■■■□□ 2.37
CHFR-222ENST00000544093 HSP90B1P14625 803 aaKnown RBP29.88■■■□□ 2.37
CHFR-222ENST00000544093 TMX4Q9H1E5 349 aaPredicted RBP29.88■■■□□ 2.37
CHFR-222ENST00000544093 GLTPD2A6NH11 291 aa29.87■■■□□ 2.37
CHFR-222ENST00000544093 CCER2I3L3R5 266 aa29.87■■■□□ 2.37
CHFR-222ENST00000544093 HCLS1P14317 486 aaPredicted RBP29.86■■■□□ 2.37
CHFR-222ENST00000544093 DPY19L2Q6NUT2 758 aa29.86■■■□□ 2.37
CHFR-222ENST00000544093 C3orf67Q6ZVT6 689 aa29.86■■■□□ 2.37
CHFR-222ENST00000544093 PPEF1O14829 653 aaPredicted RBP29.85■■■□□ 2.37
CHFR-222ENST00000544093 CCDC191Q8NCU4 936 aa29.85■■■□□ 2.37
CHFR-222ENST00000544093 PSMD1Q99460 953 aa29.85■■■□□ 2.37
CHFR-222ENST00000544093 NMRK2Q9NPI5 230 aa29.85■■■□□ 2.37
CHFR-222ENST00000544093 KSR2Q6VAB6 950 aa29.84■■■□□ 2.37
CHFR-222ENST00000544093 METTL22Q9BUU2 404 aaPredicted RBP29.84■■■□□ 2.37
CHFR-222ENST00000544093 DDX60Q8IY21 1712 aaKnown RBP29.84■■■□□ 2.37
CHFR-222ENST00000544093 BBOX1O75936 387 aa29.83■■■□□ 2.37
CHFR-222ENST00000544093 TOMM70O94826 608 aa29.83■■■□□ 2.37
CHFR-222ENST00000544093 SLC4A2P04920 1241 aa29.83■■■□□ 2.37
CHFR-222ENST00000544093 DDX46Q7L014 1031 aaKnown RBP29.83■■■□□ 2.37
CHFR-222ENST00000544093 ZBTB38Q8NAP3 1195 aaPredicted RBP29.83■■■□□ 2.37
CHFR-222ENST00000544093 FAM89AQ96GI7 184 aa29.83■■■□□ 2.37
CHFR-222ENST00000544093 MYD88Q99836 296 aa29.83■■■□□ 2.37
CHFR-222ENST00000544093 SNED1Q8TER0 1413 aa29.82■■■□□ 2.36
CHFR-222ENST00000544093 ABCC4O15439 1325 aa29.82■■■□□ 2.36
CHFR-222ENST00000544093 EXOSC9Q06265 439 aaKnown RBP29.82■■■□□ 2.36
CHFR-222ENST00000544093 C16orf71Q8IYS4 520 aaPredicted RBP29.82■■■□□ 2.36
CHFR-222ENST00000544093 SYNE4Q8N205 404 aa29.82■■■□□ 2.36
CHFR-222ENST00000544093 ZNF521Q96K83 1311 aa29.81■■■□□ 2.36
CHFR-222ENST00000544093 VAMP4O75379 141 aa29.81■■■□□ 2.36
CHFR-222ENST00000544093 NEXNQ0ZGT2 675 aa29.81■■■□□ 2.36
CHFR-222ENST00000544093 OLFM4Q6UX06 510 aa29.81■■■□□ 2.36
CHFR-222ENST00000544093 CWC25Q9NXE8 425 aaPredicted RBP29.81■■■□□ 2.36
CHFR-222ENST00000544093 MAP3K2Q9Y2U5 619 aa29.81■■■□□ 2.36
CHFR-222ENST00000544093 PI4KAP2A4QPH2 592 aa29.8■■■□□ 2.36
CHFR-222ENST00000544093 TMC4Q7Z404 712 aa29.8■■■□□ 2.36
CHFR-222ENST00000544093 PI4KAP1Q8N8J0 262 aa29.8■■■□□ 2.36
CHFR-222ENST00000544093 ATP6V0A2Q9Y487 856 aa29.8■■■□□ 2.36
CHFR-222ENST00000544093 SF3B3Q15393 1217 aaKnown RBP29.79■■■□□ 2.36
CHFR-222ENST00000544093 ZNF277Q9NRM2 450 aaPredicted RBP29.79■■■□□ 2.36
CHFR-222ENST00000544093 IRS4O14654 1257 aaPredicted RBP29.78■■■□□ 2.36
CHFR-222ENST00000544093 IARSP41252 1262 aaKnown RBP29.78■■■□□ 2.36
CHFR-222ENST00000544093 GRAPQ13588 217 aa29.78■■■□□ 2.36
CHFR-222ENST00000544093 GRAPLQ8TC17 118 aaPredicted RBP29.78■■■□□ 2.36
CHFR-222ENST00000544093 RRAGCQ9HB90 399 aa29.78■■■□□ 2.36
CHFR-222ENST00000544093 SPINK5Q9NQ38 1064 aaPredicted RBP29.78■■■□□ 2.36
CHFR-222ENST00000544093 TCERG1O14776 1098 aaKnown RBP29.77■■■□□ 2.36
CHFR-222ENST00000544093 PCCAP05165 728 aaPredicted RBP29.77■■■□□ 2.36
CHFR-222ENST00000544093 VEGFAP15692 232 aaPredicted RBP29.77■■■□□ 2.36
CHFR-222ENST00000544093 FLIIQ13045 1269 aa29.77■■■□□ 2.36
CHFR-222ENST00000544093 WDR90Q96KV7 1748 aa29.76■■■□□ 2.36
CHFR-222ENST00000544093 SP8Q8IXZ3 490 aa29.75■■■□□ 2.35
CHFR-222ENST00000544093 RBM46Q8TBY0 533 aaKnown RBP29.75■■■□□ 2.35
CHFR-222ENST00000544093 RTL5Q5HYW3 569 aaPredicted RBP29.74■■■□□ 2.35
CHFR-222ENST00000544093 SUPT20HQ8NEM7 779 aa29.74■■■□□ 2.35
CHFR-222ENST00000544093 JDP2Q8WYK2 163 aa29.74■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms