RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 PTH1RQ03431 593 aa16.37■□□□□ 0.21
VPS33A-208ENST00000543633 TEFQ10587 303 aa16.37■□□□□ 0.21
VPS33A-208ENST00000543633 AMOTQ4VCS5 1084 aa16.37■□□□□ 0.21
VPS33A-208ENST00000543633 PRPF40BQ6NWY9 871 aaKnown RBP16.36■□□□□ 0.21
VPS33A-208ENST00000543633 KCNH5Q8NCM2 988 aa16.36■□□□□ 0.21
VPS33A-208ENST00000543633 MAP4K1Q92918 833 aa16.36■□□□□ 0.21
VPS33A-208ENST00000543633 KRT85P78386 507 aa16.36■□□□□ 0.21
VPS33A-208ENST00000543633 PLEKHO1Q53GL0 409 aaPredicted RBP16.36■□□□□ 0.21
VPS33A-208ENST00000543633 RNF20Q5VTR2 975 aa16.36■□□□□ 0.21
VPS33A-208ENST00000543633 KSR2Q6VAB6 950 aa16.36■□□□□ 0.21
VPS33A-208ENST00000543633 LTV1Q96GA3 475 aaPredicted RBP16.36■□□□□ 0.21
VPS33A-208ENST00000543633 SLIT3O75094 1523 aa16.36■□□□□ 0.21
VPS33A-208ENST00000543633 RFX7Q2KHR2 1363 aa16.35■□□□□ 0.21
VPS33A-208ENST00000543633 KIF1AQ12756 1690 aa16.35■□□□□ 0.21
VPS33A-208ENST00000543633 DNM1Q05193 864 aaKnown RBP16.35■□□□□ 0.21
VPS33A-208ENST00000543633 CREB3L3Q68CJ9 461 aa16.35■□□□□ 0.21
VPS33A-208ENST00000543633 RBM8AQ9Y5S9 174 aaKnown RBP16.35■□□□□ 0.21
VPS33A-208ENST00000543633 MED23Q9ULK4 1368 aa16.35■□□□□ 0.21
VPS33A-208ENST00000543633 BTBD11A6QL63 1104 aa16.35■□□□□ 0.21
VPS33A-208ENST00000543633 ATF3P18847 181 aa16.35■□□□□ 0.21
VPS33A-208ENST00000543633 ST3GAL1Q11201 340 aa16.35■□□□□ 0.21
VPS33A-208ENST00000543633 ADCK5Q3MIX3 580 aa16.35■□□□□ 0.21
VPS33A-208ENST00000543633 DNTTIP2Q5QJE6 756 aaKnown RBP16.35■□□□□ 0.21
VPS33A-208ENST00000543633 HMG20BQ9P0W2 317 aa16.35■□□□□ 0.21
VPS33A-208ENST00000543633 ME3Q16798 604 aa16.34■□□□□ 0.21
VPS33A-208ENST00000543633 TSGA10IPQ3SY00 556 aa16.34■□□□□ 0.21
VPS33A-208ENST00000543633 USHBP1Q8N6Y0 703 aa16.34■□□□□ 0.21
VPS33A-208ENST00000543633 LINS1Q8NG48 757 aa16.34■□□□□ 0.21
VPS33A-208ENST00000543633 PKNOX2Q96KN3 472 aa16.34■□□□□ 0.21
VPS33A-208ENST00000543633 C9orf78Q9NZ63 289 aaPredicted RBP16.34■□□□□ 0.21
VPS33A-208ENST00000543633 NBPF6Q5VWK0 638 aa16.33■□□□□ 0.21
VPS33A-208ENST00000543633 ZNF530Q6P9A1 599 aaPredicted RBP16.33■□□□□ 0.21
VPS33A-208ENST00000543633 CADPS2Q86UW7 1296 aa16.33■□□□□ 0.21
VPS33A-208ENST00000543633 FAM200AQ8TCP9 573 aa16.33■□□□□ 0.21
VPS33A-208ENST00000543633 NBPF4Q96M43 638 aa16.33■□□□□ 0.21
VPS33A-208ENST00000543633 SCAND2PQ9GZW5 306 aaPredicted RBP16.33■□□□□ 0.21
VPS33A-208ENST00000543633 LGR6Q9HBX8 967 aa16.33■□□□□ 0.21
VPS33A-208ENST00000543633 PSME1Q06323 249 aa16.33■□□□□ 0.2
VPS33A-208ENST00000543633 GIMAP6Q6P9H5 292 aa16.33■□□□□ 0.2
VPS33A-208ENST00000543633 MAP3K2Q9Y2U5 619 aa16.33■□□□□ 0.2
VPS33A-208ENST00000543633 TRPM3Q9HCF6 1732 aaPredicted RBP16.33■□□□□ 0.2
VPS33A-208ENST00000543633 VPS37CA5D8V6 355 aaPredicted RBP16.32■□□□□ 0.2
VPS33A-208ENST00000543633 RNMTO43148 476 aaKnown RBP16.32■□□□□ 0.2
VPS33A-208ENST00000543633 DDX58O95786 925 aaKnown RBP16.32■□□□□ 0.2
VPS33A-208ENST00000543633 CPA1P15085 419 aa16.32■□□□□ 0.2
VPS33A-208ENST00000543633 MAP3K11Q16584 847 aa16.32■□□□□ 0.2
VPS33A-208ENST00000543633 NUTM2GQ5VZR2 741 aa16.32■□□□□ 0.2
VPS33A-208ENST00000543633 AACSQ86V21 672 aa16.32■□□□□ 0.2
VPS33A-208ENST00000543633 KIAA1524Q8TCG1 905 aa16.32■□□□□ 0.2
VPS33A-208ENST00000543633 NUP62CLQ9H1M0 184 aa16.32■□□□□ 0.2
VPS33A-208ENST00000543633 DDX19AQ9NUU7 478 aaKnown RBP16.32■□□□□ 0.2
VPS33A-208ENST00000543633 PXDNQ92626 1479 aa16.32■□□□□ 0.2
VPS33A-208ENST00000543633 NPHP3Q7Z494 1330 aa16.32■□□□□ 0.2
VPS33A-208ENST00000543633 SLC27A2O14975 620 aa16.31■□□□□ 0.2
VPS33A-208ENST00000543633 GIGYF1O75420 1035 aaPredicted RBP16.31■□□□□ 0.2
VPS33A-208ENST00000543633 RBM43Q6ZSC3 357 aaKnown RBP16.31■□□□□ 0.2
VPS33A-208ENST00000543633 SMAP1Q8IYB5 467 aaPredicted RBP16.31■□□□□ 0.2
VPS33A-208ENST00000543633 TTC12Q9H892 705 aaPredicted RBP16.31■□□□□ 0.2
VPS33A-208ENST00000543633 GRM8O00222 908 aa16.31■□□□□ 0.2
VPS33A-208ENST00000543633 NMIQ13287 307 aaPredicted RBP16.31■□□□□ 0.2
VPS33A-208ENST00000543633 LARP1BQ659C4 914 aaKnown RBP16.31■□□□□ 0.2
VPS33A-208ENST00000543633 BLOC1S2Q6QNY1 142 aa16.31■□□□□ 0.2
VPS33A-208ENST00000543633 TPCN1Q9ULQ1 816 aa16.31■□□□□ 0.2
VPS33A-208ENST00000543633 KCNQ3O43525 872 aa16.3■□□□□ 0.2
VPS33A-208ENST00000543633 RPS6KB1P23443 525 aa16.3■□□□□ 0.2
VPS33A-208ENST00000543633 KCNJ4P48050 445 aa16.3■□□□□ 0.2
VPS33A-208ENST00000543633 G3BP1Q13283 466 aaKnown RBP eCLIP16.3■□□□□ 0.22e-6■■■■□ 22
VPS33A-208ENST00000543633 KRT32Q14532 448 aa16.3■□□□□ 0.2
VPS33A-208ENST00000543633 C1orf141Q5JVX7 400 aa16.3■□□□□ 0.2
VPS33A-208ENST00000543633 TTC6Q86TZ1 520 aa16.3■□□□□ 0.2
VPS33A-208ENST00000543633 CCDC94Q9BW85 323 aaPredicted RBP16.3■□□□□ 0.2
VPS33A-208ENST00000543633 LARP6Q9BRS8 491 aaKnown RBP16.29■□□□□ 0.2
VPS33A-208ENST00000543633 MYH15Q9Y2K3 1946 aa16.29■□□□□ 0.2
VPS33A-208ENST00000543633 SASH1O94885 1247 aa16.29■□□□□ 0.2
VPS33A-208ENST00000543633 CAVIN2O95810 425 aa16.29■□□□□ 0.2
VPS33A-208ENST00000543633 CHAF1AQ13111 956 aaPredicted RBP16.29■□□□□ 0.2
VPS33A-208ENST00000543633 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.29■□□□□ 0.2
VPS33A-208ENST00000543633 DDX21Q9NR30 783 aaKnown RBP eCLIP16.29■□□□□ 0.2
VPS33A-208ENST00000543633 KIF3AQ9Y496 699 aa16.29■□□□□ 0.2
VPS33A-208ENST00000543633 ABCC6O95255 1503 aa16.29■□□□□ 0.2
VPS33A-208ENST00000543633 COL15A1P39059 1388 aa16.28■□□□□ 0.2
VPS33A-208ENST00000543633 TYRO3Q06418 890 aa16.28■□□□□ 0.2
VPS33A-208ENST00000543633 USPL1Q5W0Q7 1092 aa16.28■□□□□ 0.2
VPS33A-208ENST00000543633 ZNF830Q96NB3 372 aaPredicted RBP16.28■□□□□ 0.2
VPS33A-208ENST00000543633 PA2G4Q9UQ80 394 aaKnown RBP16.28■□□□□ 0.2
VPS33A-208ENST00000543633 CDC37L1Q7L3B6 337 aa16.28■□□□□ 0.2
VPS33A-208ENST00000543633 EAF2Q96CJ1 260 aaPredicted RBP16.28■□□□□ 0.2
VPS33A-208ENST00000543633 SUCLG2Q96I99 432 aa16.28■□□□□ 0.2
VPS33A-208ENST00000543633 MRVI1Q9Y6F6 885 aa16.28■□□□□ 0.2
VPS33A-208ENST00000543633 SCN11AQ9UI33 1791 aa16.27■□□□□ 0.2
VPS33A-208ENST00000543633 C5P01031 1676 aa16.27■□□□□ 0.2
VPS33A-208ENST00000543633 ANXA1P04083 346 aa16.27■□□□□ 0.2
VPS33A-208ENST00000543633 KRT28Q7Z3Y7 464 aa16.27■□□□□ 0.2
VPS33A-208ENST00000543633 NECAB1Q8N987 351 aa16.27■□□□□ 0.2
VPS33A-208ENST00000543633 FAM227BQ96M60 508 aa16.27■□□□□ 0.2
VPS33A-208ENST00000543633 KCNF1Q9H3M0 494 aa16.27■□□□□ 0.2
VPS33A-208ENST00000543633 CLSTN2Q9H4D0 955 aa16.27■□□□□ 0.2
VPS33A-208ENST00000543633 PLEKHG2Q9H7P9 1386 aa16.27■□□□□ 0.19
VPS33A-208ENST00000543633 AP5Z1O43299 807 aa16.26■□□□□ 0.19
VPS33A-208ENST00000543633 TICAM2Q86XR7 235 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms