RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 PCGF6Q9BYE7 350 aa10.84□□□□□ -0.67
CHMP4A-209ENST00000542700 SNED1Q8TER0 1413 aa10.84□□□□□ -0.67
CHMP4A-209ENST00000542700 RASAL3Q86YV0 1011 aa10.83□□□□□ -0.68
CHMP4A-209ENST00000542700 NIM1KQ8IY84 436 aa10.83□□□□□ -0.68
CHMP4A-209ENST00000542700 REM2Q8IYK8 340 aaPredicted RBP10.83□□□□□ -0.68
CHMP4A-209ENST00000542700 SETDB2Q96T68 719 aa10.83□□□□□ -0.68
CHMP4A-209ENST00000542700 ZNF330Q9Y3S2 320 aaPredicted RBP10.83□□□□□ -0.68
CHMP4A-209ENST00000542700 SOX1O00570 391 aaPredicted RBP10.82□□□□□ -0.68
CHMP4A-209ENST00000542700 FKTNO75072 461 aa10.82□□□□□ -0.68
CHMP4A-209ENST00000542700 LRCH3Q96II8 777 aa10.82□□□□□ -0.68
CHMP4A-209ENST00000542700 TBC1D2BQ9UPU7 963 aa10.82□□□□□ -0.68
CHMP4A-209ENST00000542700 WASHC2AQ641Q2 1341 aa10.82□□□□□ -0.68
CHMP4A-209ENST00000542700 NPC1L1Q9UHC9 1359 aa10.81□□□□□ -0.68
CHMP4A-209ENST00000542700 A0A087WZG4 1122 aa10.81□□□□□ -0.68
CHMP4A-209ENST00000542700 COL9A1P20849 921 aa10.81□□□□□ -0.68
CHMP4A-209ENST00000542700 EIF5P55010 431 aaKnown RBP10.81□□□□□ -0.68
CHMP4A-209ENST00000542700 KRT26Q7Z3Y9 468 aa10.81□□□□□ -0.68
CHMP4A-209ENST00000542700 TRIM17Q9Y577 477 aa10.81□□□□□ -0.68
CHMP4A-209ENST00000542700 HTTP42858 3142 aa10.8□□□□□ -0.68
CHMP4A-209ENST00000542700 ADM5C9JUS6 153 aa10.8□□□□□ -0.68
CHMP4A-209ENST00000542700 PLEKHO1Q53GL0 409 aaPredicted RBP10.8□□□□□ -0.68
CHMP4A-209ENST00000542700 C1orf141Q5JVX7 400 aa10.8□□□□□ -0.68
CHMP4A-209ENST00000542700 BCL2L13Q9BXK5 485 aa10.8□□□□□ -0.68
CHMP4A-209ENST00000542700 RANBP2P49792 3224 aaKnown RBP10.79□□□□□ -0.68
CHMP4A-209ENST00000542700 SHTN1A0MZ66 631 aa10.79□□□□□ -0.68
CHMP4A-209ENST00000542700 CXCL9Q07325 125 aa10.79□□□□□ -0.68
CHMP4A-209ENST00000542700 SLC39A6Q13433 755 aa10.79□□□□□ -0.68
CHMP4A-209ENST00000542700 NOM1Q5C9Z4 860 aaKnown RBP10.79□□□□□ -0.68
CHMP4A-209ENST00000542700 NBPF5PQ86XG9 351 aaPredicted RBP10.79□□□□□ -0.68
CHMP4A-209ENST00000542700 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.79□□□□□ -0.68
CHMP4A-209ENST00000542700 PPIP5K2O43314 1243 aa10.78□□□□□ -0.68
CHMP4A-209ENST00000542700 AOC3Q16853 763 aa10.78□□□□□ -0.68
CHMP4A-209ENST00000542700 OTOP1Q7RTM1 612 aa10.78□□□□□ -0.68
CHMP4A-209ENST00000542700 SLC51AQ86UW1 340 aa10.78□□□□□ -0.68
CHMP4A-209ENST00000542700 TMEM106CQ9BVX2 250 aa10.78□□□□□ -0.68
CHMP4A-209ENST00000542700 R3HDMLQ9H3Y0 253 aa10.78□□□□□ -0.68
CHMP4A-209ENST00000542700 RAPGEFL1Q9UHV5 662 aa10.78□□□□□ -0.68
CHMP4A-209ENST00000542700 CDHR2Q9BYE9 1310 aa10.78□□□□□ -0.68
CHMP4A-209ENST00000542700 KIF20BQ96Q89 1820 aa10.77□□□□□ -0.68
CHMP4A-209ENST00000542700 KLRG2A4D1S0 409 aaPredicted RBP10.77□□□□□ -0.69
CHMP4A-209ENST00000542700 ALDH1B1P30837 517 aa10.77□□□□□ -0.69
CHMP4A-209ENST00000542700 ARMC5Q96C12 935 aa10.77□□□□□ -0.69
CHMP4A-209ENST00000542700 PRO3102Q9H379 93 aa10.77□□□□□ -0.69
CHMP4A-209ENST00000542700 STXBP5LQ9Y2K9 1186 aa10.77□□□□□ -0.69
CHMP4A-209ENST00000542700 BRCA2P51587 3418 aa10.77□□□□□ -0.69
CHMP4A-209ENST00000542700 UNC80Q8N2C7 3258 aa10.76□□□□□ -0.69
CHMP4A-209ENST00000542700 MRC1P22897 1456 aa10.76□□□□□ -0.69
CHMP4A-209ENST00000542700 CAMTA2O94983 1202 aa10.76□□□□□ -0.69
CHMP4A-209ENST00000542700 MICALL2Q8IY33 904 aa10.76□□□□□ -0.69
CHMP4A-209ENST00000542700 DPF3Q92784 378 aa10.76□□□□□ -0.69
CHMP4A-209ENST00000542700 L3MBTL2Q969R5 705 aa10.76□□□□□ -0.69
CHMP4A-209ENST00000542700 PLA2G5P39877 138 aa10.75□□□□□ -0.69
CHMP4A-209ENST00000542700 EIF4A2Q14240 407 aaKnown RBP10.75□□□□□ -0.69
CHMP4A-209ENST00000542700 AMOTQ4VCS5 1084 aa10.75□□□□□ -0.69
CHMP4A-209ENST00000542700 CC2D2BQ6DHV5 1058 aa10.75□□□□□ -0.69
CHMP4A-209ENST00000542700 Q7L0L9 218 aa10.75□□□□□ -0.69
CHMP4A-209ENST00000542700 DEFB123Q8N688 67 aa10.75□□□□□ -0.69
CHMP4A-209ENST00000542700 PUS7Q96PZ0 661 aaKnown RBP10.75□□□□□ -0.69
CHMP4A-209ENST00000542700 CNOT7Q9UIV1 285 aaKnown RBP10.75□□□□□ -0.69
CHMP4A-209ENST00000542700 ZNRF3Q9ULT6 936 aa10.75□□□□□ -0.69
CHMP4A-209ENST00000542700 CENPFP49454 3210 aa10.74□□□□□ -0.69
CHMP4A-209ENST00000542700 FAM177BA6PVY3 158 aa10.74□□□□□ -0.69
CHMP4A-209ENST00000542700 H7C1D1 291 aa10.74□□□□□ -0.69
CHMP4A-209ENST00000542700 TCERG1O14776 1098 aaKnown RBP10.74□□□□□ -0.69
CHMP4A-209ENST00000542700 RAD17O75943 681 aa10.74□□□□□ -0.69
CHMP4A-209ENST00000542700 STARD3NLO95772 234 aa10.74□□□□□ -0.69
CHMP4A-209ENST00000542700 MKRN3Q13064 507 aaKnown RBP10.74□□□□□ -0.69
CHMP4A-209ENST00000542700 TBC1D10BQ4KMP7 808 aaPredicted RBP10.74□□□□□ -0.69
CHMP4A-209ENST00000542700 SAMD7Q7Z3H4 446 aa10.74□□□□□ -0.69
CHMP4A-209ENST00000542700 DCPSQ96C86 337 aaKnown RBP10.74□□□□□ -0.69
CHMP4A-209ENST00000542700 SLC52A2Q9HAB3 445 aa10.74□□□□□ -0.69
CHMP4A-209ENST00000542700 PTPN22Q9Y2R2 807 aa10.74□□□□□ -0.69
CHMP4A-209ENST00000542700 ERBB4Q15303 1308 aa10.74□□□□□ -0.69
CHMP4A-209ENST00000542700 SLC4A8Q2Y0W8 1093 aa10.73□□□□□ -0.69
CHMP4A-209ENST00000542700 ANKRD13DQ6ZTN6 518 aa10.73□□□□□ -0.69
CHMP4A-209ENST00000542700 VSIG10Q8N0Z9 540 aa10.73□□□□□ -0.69
CHMP4A-209ENST00000542700 FAM122AQ96E09 287 aa10.73□□□□□ -0.69
CHMP4A-209ENST00000542700 CDCA5Q96FF9 252 aa10.73□□□□□ -0.69
CHMP4A-209ENST00000542700 LAMB4A4D0S4 1761 aa10.72□□□□□ -0.69
CHMP4A-209ENST00000542700 EGFRP00533 1210 aa10.72□□□□□ -0.69
CHMP4A-209ENST00000542700 MYCP01106 439 aaPredicted RBP10.72□□□□□ -0.69
CHMP4A-209ENST00000542700 TM4SF4P48230 202 aa10.72□□□□□ -0.69
CHMP4A-209ENST00000542700 NPM2Q86SE8 214 aaKnown RBP10.72□□□□□ -0.69
CHMP4A-209ENST00000542700 ZNF333Q96JL9 665 aa10.72□□□□□ -0.69
CHMP4A-209ENST00000542700 A0A1W2PPC1 479 aa10.71□□□□□ -0.69
CHMP4A-209ENST00000542700 TNIP1Q15025 636 aa10.71□□□□□ -0.69
CHMP4A-209ENST00000542700 GRIPAP1Q4V328 841 aa10.71□□□□□ -0.69
CHMP4A-209ENST00000542700 RBM26Q5T8P6 1007 aaKnown RBP10.71□□□□□ -0.69
CHMP4A-209ENST00000542700 TPTE2Q6XPS3 522 aa10.71□□□□□ -0.69
CHMP4A-209ENST00000542700 MOB2Q70IA6 237 aa10.71□□□□□ -0.69
CHMP4A-209ENST00000542700 DZIP3Q86Y13 1208 aaKnown RBP10.71□□□□□ -0.69
CHMP4A-209ENST00000542700 SULF1Q8IWU6 871 aa10.71□□□□□ -0.69
CHMP4A-209ENST00000542700 CARD11Q9BXL7 1154 aa10.71□□□□□ -0.69
CHMP4A-209ENST00000542700 CFHR5Q9BXR6 569 aa10.71□□□□□ -0.69
CHMP4A-209ENST00000542700 ZBTB12Q9Y330 459 aaPredicted RBP10.71□□□□□ -0.69
CHMP4A-209ENST00000542700 ZNF609O15014 1411 aa10.7□□□□□ -0.7
CHMP4A-209ENST00000542700 PPEF1O14829 653 aaPredicted RBP10.7□□□□□ -0.7
CHMP4A-209ENST00000542700 IL6STP40189 918 aaPredicted RBP10.7□□□□□ -0.7
CHMP4A-209ENST00000542700 TNNT2P45379 298 aaPredicted RBP10.7□□□□□ -0.7
CHMP4A-209ENST00000542700 SREBF2Q12772 1141 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms