RNA–Protein interactions for RNA: ENST00000542570.5

TOP3A-208, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-208ENST00000542570 L1TD1Q5T7N2 865 aaKnown RBP12.09□□□□□ -0.47
TOP3A-208ENST00000542570 ARID3AQ99856 593 aa12.09□□□□□ -0.47
TOP3A-208ENST00000542570 CPS1P31327 1500 aa12.08□□□□□ -0.48
TOP3A-208ENST00000542570 MIGA1Q8NAN2 632 aa12.08□□□□□ -0.48
TOP3A-208ENST00000542570 PIGBQ92521 554 aa12.08□□□□□ -0.48
TOP3A-208ENST00000542570 RPGRQ92834 1020 aaKnown RBP12.08□□□□□ -0.48
TOP3A-208ENST00000542570 ARHGEF40Q8TER5 1519 aa12.08□□□□□ -0.48
TOP3A-208ENST00000542570 IKQ13123 557 aaPredicted RBP12.08□□□□□ -0.48
TOP3A-208ENST00000542570 PLBD2Q8NHP8 589 aa12.08□□□□□ -0.48
TOP3A-208ENST00000542570 FAM227BQ96M60 508 aa12.08□□□□□ -0.48
TOP3A-208ENST00000542570 RTCBQ9Y3I0 505 aaKnown RBP12.08□□□□□ -0.48
TOP3A-208ENST00000542570 NEURL1BA8MQ27 555 aa12.08□□□□□ -0.48
TOP3A-208ENST00000542570 SNAP23O00161 211 aa12.08□□□□□ -0.48
TOP3A-208ENST00000542570 KCNQ2O43526 872 aa12.08□□□□□ -0.48
TOP3A-208ENST00000542570 NMIQ13287 307 aaPredicted RBP12.08□□□□□ -0.48
TOP3A-208ENST00000542570 CAVIN4Q5BKX8 364 aa12.08□□□□□ -0.48
TOP3A-208ENST00000542570 BEND3Q5T5X7 828 aa12.08□□□□□ -0.48
TOP3A-208ENST00000542570 ANO8Q9HCE9 1232 aaPredicted RBP12.08□□□□□ -0.48
TOP3A-208ENST00000542570 PIK3C2BO00750 1634 aa12.07□□□□□ -0.48
TOP3A-208ENST00000542570 EVI5LQ96CN4 794 aa12.07□□□□□ -0.48
TOP3A-208ENST00000542570 ESYT1Q9BSJ8 1104 aa12.07□□□□□ -0.48
TOP3A-208ENST00000542570 ITGA6P23229 1130 aa12.07□□□□□ -0.48
TOP3A-208ENST00000542570 SYAP1Q96A49 352 aaPredicted RBP12.07□□□□□ -0.48
TOP3A-208ENST00000542570 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.07□□□□□ -0.48
TOP3A-208ENST00000542570 WDR17Q8IZU2 1322 aa12.07□□□□□ -0.48
TOP3A-208ENST00000542570 SLC9C2Q5TAH2 1124 aa12.07□□□□□ -0.48
TOP3A-208ENST00000542570 NLRP3Q96P20 1036 aa12.07□□□□□ -0.48
TOP3A-208ENST00000542570 UTP14AQ9BVJ6 771 aaKnown RBP12.07□□□□□ -0.48
TOP3A-208ENST00000542570 TFIP11Q9UBB9 837 aaKnown RBP12.07□□□□□ -0.48
TOP3A-208ENST00000542570 ATP6V1DQ9Y5K8 247 aa12.07□□□□□ -0.48
TOP3A-208ENST00000542570 LMTK2Q8IWU2 1503 aa12.07□□□□□ -0.48
TOP3A-208ENST00000542570 MSL1Q68DK7 614 aa12.06□□□□□ -0.48
TOP3A-208ENST00000542570 PUS3Q9BZE2 481 aaKnown RBP12.06□□□□□ -0.48
TOP3A-208ENST00000542570 ABCC4O15439 1325 aa12.06□□□□□ -0.48
TOP3A-208ENST00000542570 KDM4FA0A1W2PPD8 638 aa12.06□□□□□ -0.48
TOP3A-208ENST00000542570 RANBP6O60518 1105 aaKnown RBP12.06□□□□□ -0.48
TOP3A-208ENST00000542570 LRRC24Q50LG9 513 aa12.06□□□□□ -0.48
TOP3A-208ENST00000542570 UNC5CLQ8IV45 518 aa12.06□□□□□ -0.48
TOP3A-208ENST00000542570 NAPBQ9H115 298 aa12.06□□□□□ -0.48
TOP3A-208ENST00000542570 RTL1A6NKG5 1358 aa12.06□□□□□ -0.48
TOP3A-208ENST00000542570 A0A1B0GUL7 405 aa12.06□□□□□ -0.48
TOP3A-208ENST00000542570 PES1O00541 588 aaKnown RBP12.06□□□□□ -0.48
TOP3A-208ENST00000542570 RIMBP2O15034 1052 aa12.06□□□□□ -0.48
TOP3A-208ENST00000542570 ZGPATQ8N5A5 531 aaKnown RBP12.06□□□□□ -0.48
TOP3A-208ENST00000542570 EAF2Q96CJ1 260 aaPredicted RBP12.06□□□□□ -0.48
TOP3A-208ENST00000542570 SLC5A1P13866 664 aa12.05□□□□□ -0.48
TOP3A-208ENST00000542570 GSPT1P15170 499 aaKnown RBP12.05□□□□□ -0.48
TOP3A-208ENST00000542570 CARD10Q9BWT7 1032 aa12.05□□□□□ -0.48
TOP3A-208ENST00000542570 RBM8AQ9Y5S9 174 aaKnown RBP12.05□□□□□ -0.48
TOP3A-208ENST00000542570 BRPF3Q9ULD4 1205 aa12.05□□□□□ -0.48
TOP3A-208ENST00000542570 CHMLP26374 656 aa12.05□□□□□ -0.48
TOP3A-208ENST00000542570 MCM4P33991 863 aa12.05□□□□□ -0.48
TOP3A-208ENST00000542570 ANKRD18AQ8IVF6 992 aa12.05□□□□□ -0.48
TOP3A-208ENST00000542570 NACAP1Q9BZK3 213 aa12.05□□□□□ -0.48
TOP3A-208ENST00000542570 TLR7Q9NYK1 1049 aaKnown RBP12.05□□□□□ -0.48
TOP3A-208ENST00000542570 TRIM37O94972 964 aa12.04□□□□□ -0.48
TOP3A-208ENST00000542570 CCDC152Q4G0S7 254 aa12.04□□□□□ -0.48
TOP3A-208ENST00000542570 DZIP1Q86YF9 867 aaKnown RBP12.04□□□□□ -0.48
TOP3A-208ENST00000542570 BRF1Q92994 677 aa12.04□□□□□ -0.48
TOP3A-208ENST00000542570 SEC62Q99442 399 aaKnown RBP12.04□□□□□ -0.48
TOP3A-208ENST00000542570 QTRT2Q9H974 415 aaKnown RBP12.04□□□□□ -0.48
TOP3A-208ENST00000542570 LOC102724428A0A0B4J2F2 783 aa12.04□□□□□ -0.48
TOP3A-208ENST00000542570 MSNP26038 577 aaKnown RBP12.04□□□□□ -0.48
TOP3A-208ENST00000542570 IL15P40933 162 aaPredicted RBP12.04□□□□□ -0.48
TOP3A-208ENST00000542570 SIK1P57059 783 aa12.04□□□□□ -0.48
TOP3A-208ENST00000542570 MAP3K12Q12852 859 aa12.04□□□□□ -0.48
TOP3A-208ENST00000542570 IMMTQ16891 758 aaKnown RBP12.04□□□□□ -0.48
TOP3A-208ENST00000542570 CDC5LQ99459 802 aaKnown RBP12.04□□□□□ -0.48
TOP3A-208ENST00000542570 RXRAP19793 462 aa12.04□□□□□ -0.48
TOP3A-208ENST00000542570 ZNF213O14771 459 aa12.03□□□□□ -0.48
TOP3A-208ENST00000542570 CPSF1Q10570 1443 aaKnown RBP12.03□□□□□ -0.48
TOP3A-208ENST00000542570 SMARCC1Q92922 1105 aaPredicted RBP12.03□□□□□ -0.48
TOP3A-208ENST00000542570 SART3Q15020 963 aaKnown RBP12.03□□□□□ -0.48
TOP3A-208ENST00000542570 CCDC87Q9NVE4 849 aa12.03□□□□□ -0.48
TOP3A-208ENST00000542570 QRICH2Q9H0J4 1663 aa12.03□□□□□ -0.48
TOP3A-208ENST00000542570 USP5P45974 858 aa12.03□□□□□ -0.48
TOP3A-208ENST00000542570 TNPO1Q92973 898 aaKnown RBP12.03□□□□□ -0.48
TOP3A-208ENST00000542570 TMX3Q96JJ7 454 aa12.03□□□□□ -0.48
TOP3A-208ENST00000542570 SDF4Q9BRK5 362 aa12.03□□□□□ -0.48
TOP3A-208ENST00000542570 PAG1Q9NWQ8 432 aa12.03□□□□□ -0.48
TOP3A-208ENST00000542570 ERVV-2B6SEH9 535 aa12.02□□□□□ -0.48
TOP3A-208ENST00000542570 TPTE2Q6XPS3 522 aa12.02□□□□□ -0.48
TOP3A-208ENST00000542570 MICU3Q86XE3 530 aa12.02□□□□□ -0.48
TOP3A-208ENST00000542570 UBAC1Q9BSL1 405 aa12.02□□□□□ -0.48
TOP3A-208ENST00000542570 SH3TC1Q8TE82 1336 aa12.02□□□□□ -0.48
TOP3A-208ENST00000542570 SLFNL1Q499Z3 407 aa12.02□□□□□ -0.49
TOP3A-208ENST00000542570 EPHA10Q5JZY3 1008 aa12.02□□□□□ -0.49
TOP3A-208ENST00000542570 TRAPPC3LQ5T215 181 aa12.02□□□□□ -0.49
TOP3A-208ENST00000542570 CHAMP1Q96JM3 812 aa12.02□□□□□ -0.49
TOP3A-208ENST00000542570 EYA2O00167 538 aa12.02□□□□□ -0.49
TOP3A-208ENST00000542570 TCIRG1Q13488 830 aa12.02□□□□□ -0.49
TOP3A-208ENST00000542570 U3KPZ7 1027 aaPredicted RBP12.02□□□□□ -0.49
TOP3A-208ENST00000542570 CCDC69A6NI79 296 aa12.01□□□□□ -0.49
TOP3A-208ENST00000542570 BECN2A8MW95 431 aa12.01□□□□□ -0.49
TOP3A-208ENST00000542570 TNNI3KQ59H18 835 aa12.01□□□□□ -0.49
TOP3A-208ENST00000542570 FPGT-TNNI3KV9GXZ4 949 aa12.01□□□□□ -0.49
TOP3A-208ENST00000542570 APBA3O96018 575 aa12.01□□□□□ -0.49
TOP3A-208ENST00000542570 CYP7A1P22680 504 aa12.01□□□□□ -0.49
TOP3A-208ENST00000542570 HLFQ16534 295 aa12.01□□□□□ -0.49
TOP3A-208ENST00000542570 PI16Q6UXB8 463 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms