RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 HSP90AB4PQ58FF6 505 aa16.21■□□□□ 0.19
PTPN1-202ENST00000541713 CREB3L3Q68CJ9 461 aa16.21■□□□□ 0.19
PTPN1-202ENST00000541713 VSIG10Q8N0Z9 540 aa16.21■□□□□ 0.19
PTPN1-202ENST00000541713 SETD1AO15047 1707 aaKnown RBP16.21■□□□□ 0.19
PTPN1-202ENST00000541713 JAK2O60674 1132 aa16.21■□□□□ 0.18
PTPN1-202ENST00000541713 ZNF790Q6PG37 636 aa16.21■□□□□ 0.18
PTPN1-202ENST00000541713 CCT2P78371 535 aaKnown RBP16.2■□□□□ 0.18
PTPN1-202ENST00000541713 ARHGEF25Q86VW2 580 aa16.2■□□□□ 0.18
PTPN1-202ENST00000541713 DBNDD2Q9BQY9 259 aa16.2■□□□□ 0.18
PTPN1-202ENST00000541713 ISY1Q9ULR0 285 aaKnown RBP16.2■□□□□ 0.18
PTPN1-202ENST00000541713 CDC37L1Q7L3B6 337 aa16.2■□□□□ 0.18
PTPN1-202ENST00000541713 SYAP1Q96A49 352 aaPredicted RBP16.2■□□□□ 0.18
PTPN1-202ENST00000541713 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.2■□□□□ 0.18
PTPN1-202ENST00000541713 DIP2AQ14689 1571 aa16.2■□□□□ 0.18
PTPN1-202ENST00000541713 ERCC4Q92889 916 aaPredicted RBP16.2■□□□□ 0.18
PTPN1-202ENST00000541713 HYPKQ9NX55 129 aa16.2■□□□□ 0.18
PTPN1-202ENST00000541713 MON2Q7Z3U7 1717 aa16.19■□□□□ 0.18
PTPN1-202ENST00000541713 A0A0G2JLW4 131 aa16.19■□□□□ 0.18
PTPN1-202ENST00000541713 F13A1P00488 732 aa16.19■□□□□ 0.18
PTPN1-202ENST00000541713 HSPA2P54652 639 aa16.19■□□□□ 0.18
PTPN1-202ENST00000541713 ANAPC15P60006 121 aa16.19■□□□□ 0.18
PTPN1-202ENST00000541713 ANKRD13DQ6ZTN6 518 aa16.19■□□□□ 0.18
PTPN1-202ENST00000541713 BLOC1S2Q6QNY1 142 aa16.19■□□□□ 0.18
PTPN1-202ENST00000541713 STK11IPQ8N1F8 1099 aa16.19■□□□□ 0.18
PTPN1-202ENST00000541713 LINS1Q8NG48 757 aa16.19■□□□□ 0.18
PTPN1-202ENST00000541713 NRKQ7Z2Y5 1582 aa16.18■□□□□ 0.18
PTPN1-202ENST00000541713 TATP17735 454 aaPredicted RBP16.18■□□□□ 0.18
PTPN1-202ENST00000541713 LMBR1LQ6UX01 489 aa16.18■□□□□ 0.18
PTPN1-202ENST00000541713 PPP1R9BQ96SB3 815 aa16.18■□□□□ 0.18
PTPN1-202ENST00000541713 ADCY5O95622 1261 aa16.18■□□□□ 0.18
PTPN1-202ENST00000541713 CABP4P57796 275 aa16.18■□□□□ 0.18
PTPN1-202ENST00000541713 PXDNQ92626 1479 aa16.18■□□□□ 0.18
PTPN1-202ENST00000541713 GOLIM4O00461 696 aa16.18■□□□□ 0.18
PTPN1-202ENST00000541713 A1BGP04217 495 aa16.18■□□□□ 0.18
PTPN1-202ENST00000541713 DRC7Q8IY82 874 aa16.18■□□□□ 0.18
PTPN1-202ENST00000541713 CCDC171Q6TFL3 1326 aa16.17■□□□□ 0.18
PTPN1-202ENST00000541713 HAND2P61296 217 aa16.17■□□□□ 0.18
PTPN1-202ENST00000541713 FKBP4Q02790 459 aaKnown RBP eCLIP16.17■□□□□ 0.18
PTPN1-202ENST00000541713 AMOTQ4VCS5 1084 aa16.17■□□□□ 0.18
PTPN1-202ENST00000541713 LARP1Q6PKG0 1096 aaKnown RBP16.17■□□□□ 0.18
PTPN1-202ENST00000541713 CLEC17AQ6ZS10 378 aa16.17■□□□□ 0.18
PTPN1-202ENST00000541713 SLC27A2O14975 620 aa16.17■□□□□ 0.18
PTPN1-202ENST00000541713 EVI5LQ96CN4 794 aa16.17■□□□□ 0.18
PTPN1-202ENST00000541713 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.17■□□□□ 0.182e-8■□□□□ 8.7
PTPN1-202ENST00000541713 ATF3P18847 181 aa16.16■□□□□ 0.18
PTPN1-202ENST00000541713 BICD2Q8TD16 824 aa16.16■□□□□ 0.18
PTPN1-202ENST00000541713 FTOQ9C0B1 505 aaKnown RBP eCLIP16.16■□□□□ 0.18
PTPN1-202ENST00000541713 DDX21Q9NR30 783 aaKnown RBP eCLIP16.16■□□□□ 0.18
PTPN1-202ENST00000541713 INTS4Q96HW7 963 aaKnown RBP16.16■□□□□ 0.18
PTPN1-202ENST00000541713 TTC14Q96N46 770 aa16.16■□□□□ 0.18
PTPN1-202ENST00000541713 TTLL7Q6ZT98 887 aa16.15■□□□□ 0.18
PTPN1-202ENST00000541713 NCOA5Q9HCD5 579 aaKnown RBP16.15■□□□□ 0.18
PTPN1-202ENST00000541713 RPAP1Q9BWH6 1393 aaPredicted RBP16.15■□□□□ 0.18
PTPN1-202ENST00000541713 NEURL1BA8MQ27 555 aa16.15■□□□□ 0.18
PTPN1-202ENST00000541713 H3BQV1 296 aa16.15■□□□□ 0.18
PTPN1-202ENST00000541713 GCKRQ14397 625 aa16.15■□□□□ 0.18
PTPN1-202ENST00000541713 IFFO2Q5TF58 517 aa16.15■□□□□ 0.18
PTPN1-202ENST00000541713 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.15■□□□□ 0.18
PTPN1-202ENST00000541713 DBNLQ9UJU6 430 aaKnown RBP16.15■□□□□ 0.18
PTPN1-202ENST00000541713 UBR1Q8IWV7 1749 aa16.15■□□□□ 0.18
PTPN1-202ENST00000541713 UQCRHLA0A096LP55 91 aa16.15■□□□□ 0.18
PTPN1-202ENST00000541713 UQCRHP07919 91 aa16.15■□□□□ 0.18
PTPN1-202ENST00000541713 LIG1P18858 919 aa16.15■□□□□ 0.18
PTPN1-202ENST00000541713 BRF1Q92994 677 aa16.15■□□□□ 0.18
PTPN1-202ENST00000541713 SYTL4Q96C24 671 aaPredicted RBP16.15■□□□□ 0.18
PTPN1-202ENST00000541713 MTMR6Q9Y217 621 aa16.15■□□□□ 0.18
PTPN1-202ENST00000541713 GORABQ5T7V8 394 aa16.14■□□□□ 0.17
PTPN1-202ENST00000541713 VPS53Q5VIR6 699 aa16.14■□□□□ 0.17
PTPN1-202ENST00000541713 ST3GAL1Q11201 340 aa16.14■□□□□ 0.17
PTPN1-202ENST00000541713 PDIA6Q15084 440 aa16.14■□□□□ 0.17
PTPN1-202ENST00000541713 TOM1L2Q6ZVM7 507 aa16.14■□□□□ 0.17
PTPN1-202ENST00000541713 OTUD7BQ6GQQ9 843 aa16.13■□□□□ 0.17
PTPN1-202ENST00000541713 LUZP1Q86V48 1076 aa16.13■□□□□ 0.17
PTPN1-202ENST00000541713 AKAP12Q02952 1782 aa16.13■□□□□ 0.17
PTPN1-202ENST00000541713 TTC6Q86TZ1 520 aa16.13■□□□□ 0.17
PTPN1-202ENST00000541713 ERC1Q8IUD2 1116 aa16.13■□□□□ 0.17
PTPN1-202ENST00000541713 CCDC183Q5T5S1 534 aa16.12■□□□□ 0.17
PTPN1-202ENST00000541713 TTLL5Q6EMB2 1281 aa16.12■□□□□ 0.17
PTPN1-202ENST00000541713 FAM184AQ8NB25 1140 aa16.12■□□□□ 0.17
PTPN1-202ENST00000541713 GPHNQ9NQX3 736 aaPredicted RBP16.12■□□□□ 0.17
PTPN1-202ENST00000541713 ZKSCAN5Q9Y2L8 839 aa16.12■□□□□ 0.17
PTPN1-202ENST00000541713 TCHHQ07283 1943 aa16.12■□□□□ 0.17
PTPN1-202ENST00000541713 CEMIPQ8WUJ3 1361 aa16.12■□□□□ 0.17
PTPN1-202ENST00000541713 ALDH1L1O75891 902 aa16.12■□□□□ 0.17
PTPN1-202ENST00000541713 GPTP24298 496 aa16.12■□□□□ 0.17
PTPN1-202ENST00000541713 WASHC4Q2M389 1173 aa16.12■□□□□ 0.17
PTPN1-202ENST00000541713 Q6ZUG5 572 aa16.12■□□□□ 0.17
PTPN1-202ENST00000541713 SYNE4Q8N205 404 aa16.12■□□□□ 0.17
PTPN1-202ENST00000541713 SLC52A2Q9HAB3 445 aa16.12■□□□□ 0.17
PTPN1-202ENST00000541713 DACT1Q9NYF0 836 aa16.12■□□□□ 0.17
PTPN1-202ENST00000541713 CYP27B1O15528 508 aa16.11■□□□□ 0.17
PTPN1-202ENST00000541713 PUS3Q9BZE2 481 aaKnown RBP16.11■□□□□ 0.17
PTPN1-202ENST00000541713 CCDC39Q9UFE4 941 aa16.11■□□□□ 0.17
PTPN1-202ENST00000541713 PIK3C2AO00443 1686 aa16.11■□□□□ 0.17
PTPN1-202ENST00000541713 NECTIN1Q15223 517 aa16.11■□□□□ 0.17
PTPN1-202ENST00000541713 LRRC24Q50LG9 513 aa16.11■□□□□ 0.17
PTPN1-202ENST00000541713 TTC41PQ6P2S7 1318 aa16.11■□□□□ 0.17
PTPN1-202ENST00000541713 PHF14O94880 888 aa16.11■□□□□ 0.17
PTPN1-202ENST00000541713 SPATA32Q96LK8 384 aa16.11■□□□□ 0.17
PTPN1-202ENST00000541713 NOL7Q9UMY1 257 aaKnown RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms