RNA–Protein interactions for RNA: ENST00000541496.1

SPARCL1-209, Transcript of SPARC like 1, humanhuman

TSL 2

Gene SPARCL1, Length 818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPARCL1-209ENST00000541496 ATG3Q9NT62 314 aa6.47□□□□□ -1.37
SPARCL1-209ENST00000541496 TSPYL4Q9UJ04 414 aa6.47□□□□□ -1.37
SPARCL1-209ENST00000541496 PLSCR1O15162 318 aa6.46□□□□□ -1.38
SPARCL1-209ENST00000541496 HMGB2P26583 209 aaKnown RBP6.46□□□□□ -1.38
SPARCL1-209ENST00000541496 PADI6Q6TGC4 694 aa6.46□□□□□ -1.38
SPARCL1-209ENST00000541496 CCDC125Q86Z20 511 aa6.46□□□□□ -1.38
SPARCL1-209ENST00000541496 TTC5Q8N0Z6 440 aa6.46□□□□□ -1.38
SPARCL1-209ENST00000541496 TATDN2Q93075 761 aa6.46□□□□□ -1.38
SPARCL1-209ENST00000541496 ZNF428Q96B54 188 aa6.46□□□□□ -1.38
SPARCL1-209ENST00000541496 SYTL4Q96C24 671 aaPredicted RBP6.46□□□□□ -1.38
SPARCL1-209ENST00000541496 ASAP1Q9ULH1 1129 aa6.46□□□□□ -1.38
SPARCL1-209ENST00000541496 PALLDQ8WX93 1383 aa6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 RGPD2P0DJD1 1756 aa6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 KCNQ3O43525 872 aa6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 GIGYF1O75420 1035 aaPredicted RBP6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 TRIM37O94972 964 aa6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 SLC39A6Q13433 755 aa6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 RBM26Q5T8P6 1007 aaKnown RBP6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 THSD4Q6ZMP0 1018 aa6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 PTF1AQ7RTS3 328 aa6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 GPIHBP1Q8IV16 184 aa6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 TSR2Q969E8 191 aaKnown RBP6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 ZNF496Q96IT1 587 aaPredicted RBP6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 ZFRQ96KR1 1074 aaKnown RBP6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 YTHDC1Q96MU7 727 aaKnown RBP6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 FMNL2Q96PY5 1086 aa6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 CHMP4AQ9BY43 222 aa6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 MIS18AQ9NYP9 233 aa6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 PNMA3Q9UL41 463 aa6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 LAS1LQ9Y4W2 734 aaKnown RBP6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 SHANK3Q9BYB0 1731 aa6.45□□□□□ -1.38
SPARCL1-209ENST00000541496 WNK3Q9BYP7 1800 aa6.44□□□□□ -1.38
SPARCL1-209ENST00000541496 LOC102724428A0A0B4J2F2 783 aa6.44□□□□□ -1.38
SPARCL1-209ENST00000541496 SNRPA1P09661 255 aaKnown RBP6.44□□□□□ -1.38
SPARCL1-209ENST00000541496 SIK1P57059 783 aa6.44□□□□□ -1.38
SPARCL1-209ENST00000541496 SLC27A3Q5K4L6 730 aa6.44□□□□□ -1.38
SPARCL1-209ENST00000541496 NYAP1Q6ZVC0 841 aa6.44□□□□□ -1.38
SPARCL1-209ENST00000541496 NECTIN2Q92692 538 aa6.44□□□□□ -1.38
SPARCL1-209ENST00000541496 TEX13AQ9BXU3 409 aaPredicted RBP6.44□□□□□ -1.38
SPARCL1-209ENST00000541496 SEPT9Q9UHD8 586 aaPredicted RBP6.44□□□□□ -1.38
SPARCL1-209ENST00000541496 SOWAHBA6NEL2 793 aa6.43□□□□□ -1.38
SPARCL1-209ENST00000541496 GNPATO15228 680 aa6.43□□□□□ -1.38
SPARCL1-209ENST00000541496 PTCD1O75127 700 aaKnown RBP6.43□□□□□ -1.38
SPARCL1-209ENST00000541496 VAMP4O75379 141 aa6.43□□□□□ -1.38
SPARCL1-209ENST00000541496 SLC4A3P48751 1232 aa6.43□□□□□ -1.38
SPARCL1-209ENST00000541496 EXOSC9Q06265 439 aaKnown RBP6.43□□□□□ -1.38
SPARCL1-209ENST00000541496 TWISTNBQ3B726 338 aaPredicted RBP6.43□□□□□ -1.38
SPARCL1-209ENST00000541496 NUDT18Q6ZVK8 323 aa6.43□□□□□ -1.38
SPARCL1-209ENST00000541496 TSPYL6Q8N831 410 aa6.43□□□□□ -1.38
SPARCL1-209ENST00000541496 C8orf58Q8NAV2 365 aa6.43□□□□□ -1.38
SPARCL1-209ENST00000541496 RBM46Q8TBY0 533 aaKnown RBP6.43□□□□□ -1.38
SPARCL1-209ENST00000541496 LRCH3Q96II8 777 aa6.43□□□□□ -1.38
SPARCL1-209ENST00000541496 SLC4A9Q96Q91 983 aa6.43□□□□□ -1.38
SPARCL1-209ENST00000541496 FAM198AQ9UFP1 575 aa6.43□□□□□ -1.38
SPARCL1-209ENST00000541496 KCPQ6ZWJ8 1503 aa6.43□□□□□ -1.38
SPARCL1-209ENST00000541496 ERBB4Q15303 1308 aa6.43□□□□□ -1.38
SPARCL1-209ENST00000541496 STARD3NLO95772 234 aa6.42□□□□□ -1.38
SPARCL1-209ENST00000541496 APBA3O96018 575 aa6.42□□□□□ -1.38
SPARCL1-209ENST00000541496 OATP04181 439 aa6.42□□□□□ -1.38
SPARCL1-209ENST00000541496 BRPF1P55201 1214 aaPredicted RBP6.42□□□□□ -1.38
SPARCL1-209ENST00000541496 SF3B2Q13435 895 aaKnown RBP6.42□□□□□ -1.38
SPARCL1-209ENST00000541496 KRT24Q2M2I5 525 aa6.42□□□□□ -1.38
SPARCL1-209ENST00000541496 CAMKK2Q96RR4 588 aa6.42□□□□□ -1.38
SPARCL1-209ENST00000541496 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.42□□□□□ -1.38
SPARCL1-209ENST00000541496 TOGARAM1Q9Y4F4 1720 aa6.42□□□□□ -1.38
SPARCL1-209ENST00000541496 GPR37O15354 613 aa6.41□□□□□ -1.38
SPARCL1-209ENST00000541496 CYP19A1P11511 503 aaPredicted RBP6.41□□□□□ -1.38
SPARCL1-209ENST00000541496 ATP6V1AP38606 617 aa6.41□□□□□ -1.38
SPARCL1-209ENST00000541496 BAG6P46379 1132 aa6.41□□□□□ -1.38
SPARCL1-209ENST00000541496 ITPK1Q13572 414 aa6.41□□□□□ -1.38
SPARCL1-209ENST00000541496 TXNRD1Q16881 649 aa6.41□□□□□ -1.38
SPARCL1-209ENST00000541496 ALDH1L2Q3SY69 923 aa6.41□□□□□ -1.38
SPARCL1-209ENST00000541496 RC3H1Q5TC82 1133 aaKnown RBP6.41□□□□□ -1.38
SPARCL1-209ENST00000541496 HDGFL1Q5TGJ6 251 aa6.41□□□□□ -1.38
SPARCL1-209ENST00000541496 CCDC30Q5VVM6 783 aa6.41□□□□□ -1.38
SPARCL1-209ENST00000541496 ILDR2Q71H61 639 aa6.41□□□□□ -1.38
SPARCL1-209ENST00000541496 DNAJC10Q8IXB1 793 aa6.41□□□□□ -1.38
SPARCL1-209ENST00000541496 CCNL1Q9UK58 526 aaPredicted RBP6.41□□□□□ -1.38
SPARCL1-209ENST00000541496 USP16Q9Y5T5 823 aa6.41□□□□□ -1.38
SPARCL1-209ENST00000541496 NHSQ6T4R5 1651 aa6.41□□□□□ -1.38
SPARCL1-209ENST00000541496 CNTNAP4Q9C0A0 1308 aa6.41□□□□□ -1.38
SPARCL1-209ENST00000541496 PRAMEF22A3QJZ6 481 aa6.4□□□□□ -1.38
SPARCL1-209ENST00000541496 ELL2O00472 640 aaPredicted RBP6.4□□□□□ -1.38
SPARCL1-209ENST00000541496 RARSP54136 660 aaKnown RBP6.4□□□□□ -1.38
SPARCL1-209ENST00000541496 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.4□□□□□ -1.38
SPARCL1-209ENST00000541496 LRP10Q7Z4F1 713 aa6.4□□□□□ -1.38
SPARCL1-209ENST00000541496 DDX21Q9NR30 783 aaKnown RBP eCLIP6.4□□□□□ -1.38
SPARCL1-209ENST00000541496 LRRC4BQ9NT99 713 aa6.4□□□□□ -1.38
SPARCL1-209ENST00000541496 DBF4Q9UBU7 674 aaPredicted RBP6.4□□□□□ -1.38
SPARCL1-209ENST00000541496 ADGRG1Q9Y653 693 aa6.4□□□□□ -1.38
SPARCL1-209ENST00000541496 PAPPAQ13219 1627 aa6.39□□□□□ -1.39
SPARCL1-209ENST00000541496 SMAPO00193 183 aa6.39□□□□□ -1.39
SPARCL1-209ENST00000541496 DNAJB2P25686 324 aa6.39□□□□□ -1.39
SPARCL1-209ENST00000541496 IL6STP40189 918 aaPredicted RBP6.39□□□□□ -1.39
SPARCL1-209ENST00000541496 CRKLP46109 303 aaKnown RBP6.39□□□□□ -1.39
SPARCL1-209ENST00000541496 INTS5Q6P9B9 1019 aaKnown RBP6.39□□□□□ -1.39
SPARCL1-209ENST00000541496 LINC00116Q8NCU8 138 aa6.39□□□□□ -1.39
SPARCL1-209ENST00000541496 SSH1Q8WYL5 1049 aa6.39□□□□□ -1.39
SPARCL1-209ENST00000541496 STK31Q9BXU1 1019 aa6.39□□□□□ -1.39
SPARCL1-209ENST00000541496 CCDC87Q9NVE4 849 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms