RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 PDE6BP35913 854 aa16.66■□□□□ 0.26
COLCA1-204ENST00000540738 MFSD6Q6ZSS7 791 aa16.66■□□□□ 0.26
COLCA1-204ENST00000540738 PHAXQ9H814 394 aaKnown RBP16.66■□□□□ 0.26
COLCA1-204ENST00000540738 NAP1L1P55209 391 aaKnown RBP16.66■□□□□ 0.26
COLCA1-204ENST00000540738 FAM196AQ6ZSG2 479 aa16.66■□□□□ 0.26
COLCA1-204ENST00000540738 CARD14Q9BXL6 1004 aa16.66■□□□□ 0.26
COLCA1-204ENST00000540738 ZFYVE27Q5T4F4 411 aa16.66■□□□□ 0.26
COLCA1-204ENST00000540738 F8W031 263 aaPredicted RBP16.65■□□□□ 0.26
COLCA1-204ENST00000540738 EIF6P56537 245 aaKnown RBP16.65■□□□□ 0.26
COLCA1-204ENST00000540738 VEZTQ9HBM0 779 aa16.65■□□□□ 0.26
COLCA1-204ENST00000540738 RDXP35241 583 aaKnown RBP16.65■□□□□ 0.26
COLCA1-204ENST00000540738 CEBPZQ03701 1054 aaKnown RBP16.65■□□□□ 0.26
COLCA1-204ENST00000540738 PLBD2Q8NHP8 589 aa16.65■□□□□ 0.26
COLCA1-204ENST00000540738 RHPN1Q8TCX5 695 aa16.65■□□□□ 0.26
COLCA1-204ENST00000540738 PDCL3Q9H2J4 239 aa16.65■□□□□ 0.26
COLCA1-204ENST00000540738 PARD3Q8TEW0 1356 aa16.65■□□□□ 0.26
COLCA1-204ENST00000540738 ADGBQ8N7X0 1667 aa16.65■□□□□ 0.26
COLCA1-204ENST00000540738 K7ELQ4 463 aaPredicted RBP16.65■□□□□ 0.26
COLCA1-204ENST00000540738 PAF1Q8N7H5 531 aa16.65■□□□□ 0.26
COLCA1-204ENST00000540738 FIBPO43427 364 aa16.64■□□□□ 0.25
COLCA1-204ENST00000540738 MATR3P43243 847 aaKnown RBP eCLIP16.64■□□□□ 0.25
COLCA1-204ENST00000540738 C8orf58Q8NAV2 365 aa16.64■□□□□ 0.25
COLCA1-204ENST00000540738 B4DLN1 442 aa16.64■□□□□ 0.25
COLCA1-204ENST00000540738 MRPL12P52815 198 aaKnown RBP16.64■□□□□ 0.25
COLCA1-204ENST00000540738 ERVK-7P63135 1459 aa16.64■□□□□ 0.25
COLCA1-204ENST00000540738 GRM1Q13255 1194 aa16.64■□□□□ 0.25
COLCA1-204ENST00000540738 RSPH6AQ9H0K4 717 aa16.64■□□□□ 0.25
COLCA1-204ENST00000540738 TMEM266Q2M3C6 531 aa16.63■□□□□ 0.25
COLCA1-204ENST00000540738 GOLGA8AA7E2F4 631 aa16.63■□□□□ 0.25
COLCA1-204ENST00000540738 GOLGA8BA8MQT2 603 aa16.63■□□□□ 0.25
COLCA1-204ENST00000540738 MYCNP04198 464 aaPredicted RBP16.63■□□□□ 0.25
COLCA1-204ENST00000540738 SH2B1Q9NRF2 756 aaPredicted RBP16.63■□□□□ 0.25
COLCA1-204ENST00000540738 NPC1L1Q9UHC9 1359 aa16.63■□□□□ 0.25
COLCA1-204ENST00000540738 CCDC194A0A1B0GVG4 234 aa16.63■□□□□ 0.25
COLCA1-204ENST00000540738 ZNF335Q9H4Z2 1342 aaPredicted RBP16.63■□□□□ 0.25
COLCA1-204ENST00000540738 RBM26Q5T8P6 1007 aaKnown RBP16.62■□□□□ 0.25
COLCA1-204ENST00000540738 WWC3Q9ULE0 1092 aa16.62■□□□□ 0.25
COLCA1-204ENST00000540738 PLXNC1O60486 1568 aa16.62■□□□□ 0.25
COLCA1-204ENST00000540738 IL13P35225 146 aa16.62■□□□□ 0.25
COLCA1-204ENST00000540738 HOOK2Q96ED9 719 aa16.62■□□□□ 0.25
COLCA1-204ENST00000540738 BAG4O95429 457 aaKnown RBP16.62■□□□□ 0.25
COLCA1-204ENST00000540738 CHMP4BP1P59074 171 aa16.62■□□□□ 0.25
COLCA1-204ENST00000540738 HMGN5P82970 282 aaKnown RBP16.62■□□□□ 0.25
COLCA1-204ENST00000540738 CCDC191Q8NCU4 936 aa16.62■□□□□ 0.25
COLCA1-204ENST00000540738 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.62■□□□□ 0.25
COLCA1-204ENST00000540738 KDM5CP41229 1560 aa16.62■□□□□ 0.25
COLCA1-204ENST00000540738 ALDH1B1P30837 517 aa16.62■□□□□ 0.25
COLCA1-204ENST00000540738 RIMBP2O15034 1052 aa16.62■□□□□ 0.25
COLCA1-204ENST00000540738 CEP57L1Q8IYX8 460 aa16.62■□□□□ 0.25
COLCA1-204ENST00000540738 SMARCE1Q969G3 411 aa16.62■□□□□ 0.25
COLCA1-204ENST00000540738 KRT23Q9C075 422 aa16.62■□□□□ 0.25
COLCA1-204ENST00000540738 HMG20BQ9P0W2 317 aa16.62■□□□□ 0.25
COLCA1-204ENST00000540738 MRPL50Q8N5N7 158 aaKnown RBP16.61■□□□□ 0.25
COLCA1-204ENST00000540738 MAST3O60307 1309 aa16.61■□□□□ 0.25
COLCA1-204ENST00000540738 TTC37Q6PGP7 1564 aa16.61■□□□□ 0.25
COLCA1-204ENST00000540738 LDHBP07195 334 aaKnown RBP16.61■□□□□ 0.25
COLCA1-204ENST00000540738 SSRP1Q08945 709 aaKnown RBP16.61■□□□□ 0.25
COLCA1-204ENST00000540738 CCAR2Q8N163 923 aaKnown RBP16.61■□□□□ 0.25
COLCA1-204ENST00000540738 NCOA7Q8NI08 942 aa16.61■□□□□ 0.25
COLCA1-204ENST00000540738 GJA3Q9Y6H8 435 aa16.61■□□□□ 0.25
COLCA1-204ENST00000540738 TSPY3P0CV98 308 aa16.61■□□□□ 0.25
COLCA1-204ENST00000540738 TSPY8P0CW00 308 aa16.61■□□□□ 0.25
COLCA1-204ENST00000540738 GNAT2P19087 354 aa16.61■□□□□ 0.25
COLCA1-204ENST00000540738 ATP8B2P98198 1209 aa16.61■□□□□ 0.25
COLCA1-204ENST00000540738 DEKP35659 375 aaKnown RBP16.61■□□□□ 0.25
COLCA1-204ENST00000540738 CNNM2Q9H8M5 875 aa16.61■□□□□ 0.25
COLCA1-204ENST00000540738 GGA1Q9UJY5 639 aa16.61■□□□□ 0.25
COLCA1-204ENST00000540738 TMEM67Q5HYA8 995 aa16.6■□□□□ 0.25
COLCA1-204ENST00000540738 HOMER1Q86YM7 354 aa16.6■□□□□ 0.25
COLCA1-204ENST00000540738 IQSEC3Q9UPP2 1182 aaPredicted RBP16.6■□□□□ 0.25
COLCA1-204ENST00000540738 CCDC173Q0VFZ6 552 aa16.6■□□□□ 0.25
COLCA1-204ENST00000540738 PDE8AO60658 829 aa16.6■□□□□ 0.25
COLCA1-204ENST00000540738 UFL1O94874 794 aa16.6■□□□□ 0.25
COLCA1-204ENST00000540738 ESR2Q92731 530 aa16.6■□□□□ 0.25
COLCA1-204ENST00000540738 PHACTR3Q96KR7 559 aa16.6■□□□□ 0.25
COLCA1-204ENST00000540738 NLRP5P59047 1200 aa16.6■□□□□ 0.25
COLCA1-204ENST00000540738 TMTC2Q8N394 836 aa16.6■□□□□ 0.25
COLCA1-204ENST00000540738 LARGE2Q8N3Y3 721 aa16.6■□□□□ 0.25
COLCA1-204ENST00000540738 MEIS3Q99687 375 aa16.6■□□□□ 0.25
COLCA1-204ENST00000540738 DESP17661 470 aa16.59■□□□□ 0.25
COLCA1-204ENST00000540738 GPR162Q16538 588 aa16.59■□□□□ 0.25
COLCA1-204ENST00000540738 IL27Q8NEV9 243 aa16.59■□□□□ 0.25
COLCA1-204ENST00000540738 CARD10Q9BWT7 1032 aa16.59■□□□□ 0.25
COLCA1-204ENST00000540738 DENND2AQ9ULE3 1009 aa16.59■□□□□ 0.25
COLCA1-204ENST00000540738 PPP1R12BO60237 982 aaPredicted RBP16.59■□□□□ 0.25
COLCA1-204ENST00000540738 CCDC39Q9UFE4 941 aa16.59■□□□□ 0.25
COLCA1-204ENST00000540738 STX8Q9UNK0 236 aa16.59■□□□□ 0.25
COLCA1-204ENST00000540738 SLC4A4Q9Y6R1 1079 aa16.59■□□□□ 0.25
COLCA1-204ENST00000540738 PICALMQ13492 652 aa16.59■□□□□ 0.25
COLCA1-204ENST00000540738 DPP8Q6V1X1 898 aaPredicted RBP16.59■□□□□ 0.25
COLCA1-204ENST00000540738 LUC7LQ9NQ29 371 aaKnown RBP16.59■□□□□ 0.25
COLCA1-204ENST00000540738 GNAQP50148 359 aa16.59■□□□□ 0.25
COLCA1-204ENST00000540738 DNAJC10Q8IXB1 793 aa16.59■□□□□ 0.25
COLCA1-204ENST00000540738 KRT27Q7Z3Y8 459 aa16.59■□□□□ 0.25
COLCA1-204ENST00000540738 C8orf76Q96K31 380 aa16.58■□□□□ 0.25
COLCA1-204ENST00000540738 SPATA32Q96LK8 384 aa16.58■□□□□ 0.25
COLCA1-204ENST00000540738 ZNHIT6Q9NWK9 470 aaKnown RBP16.58■□□□□ 0.25
COLCA1-204ENST00000540738 PREX2Q70Z35 1606 aa16.58■□□□□ 0.25
COLCA1-204ENST00000540738 METP08581 1390 aa16.58■□□□□ 0.25
COLCA1-204ENST00000540738 CFAP65Q6ZU64 1925 aaKnown RBP16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms