RNA–Protein interactions for RNA: ENST00000540590.1

LMO3-223, Transcript of LIM domain only 3, humanhuman

TSL 4

Gene LMO3, Length 565 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-223ENST00000540590 USP44Q9H0E7 712 aa15.73■□□□□ 0.11
LMO3-223ENST00000540590 HDAC5Q9UQL6 1122 aa15.73■□□□□ 0.11
LMO3-223ENST00000540590 ZBTB22O15209 634 aa15.72■□□□□ 0.11
LMO3-223ENST00000540590 FXR2P51116 673 aaKnown RBP eCLIP15.72■□□□□ 0.11
LMO3-223ENST00000540590 TRAPPC3LQ5T215 181 aa15.72■□□□□ 0.11
LMO3-223ENST00000540590 ARHGEF1Q92888 912 aaKnown RBP15.72■□□□□ 0.11
LMO3-223ENST00000540590 NARFQ9UHQ1 456 aa15.72■□□□□ 0.11
LMO3-223ENST00000540590 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.71■□□□□ 0.11
LMO3-223ENST00000540590 GNAI3P08754 354 aa15.71■□□□□ 0.11
LMO3-223ENST00000540590 ATXN8OSP0DMR3 200 aa15.71■□□□□ 0.11
LMO3-223ENST00000540590 SSFA2P28290 1259 aa15.71■□□□□ 0.11
LMO3-223ENST00000540590 TRIM28Q13263 835 aaKnown RBP15.71■□□□□ 0.11
LMO3-223ENST00000540590 GCKRQ14397 625 aa15.71■□□□□ 0.11
LMO3-223ENST00000540590 FLAD1Q8NFF5 587 aa15.71■□□□□ 0.11
LMO3-223ENST00000540590 C1orf115Q9H7X2 142 aa15.71■□□□□ 0.11
LMO3-223ENST00000540590 SRP68Q9UHB9 627 aaKnown RBP15.71■□□□□ 0.11
LMO3-223ENST00000540590 PCDHB15Q9Y5E8 787 aa15.71■□□□□ 0.11
LMO3-223ENST00000540590 UTYO14607 1347 aa15.7■□□□□ 0.1
LMO3-223ENST00000540590 GRM8O00222 908 aa15.7■□□□□ 0.1
LMO3-223ENST00000540590 NBPF7P0C2Y1 421 aaPredicted RBP15.7■□□□□ 0.1
LMO3-223ENST00000540590 GPTP24298 496 aa15.7■□□□□ 0.1
LMO3-223ENST00000540590 USPL1Q5W0Q7 1092 aa15.7■□□□□ 0.1
LMO3-223ENST00000540590 CLEC4GQ6UXB4 293 aa15.7■□□□□ 0.1
LMO3-223ENST00000540590 ZNF34Q8IZ26 560 aa15.7■□□□□ 0.1
LMO3-223ENST00000540590 CCDC191Q8NCU4 936 aa15.7■□□□□ 0.1
LMO3-223ENST00000540590 BCL2L12Q9HB09 334 aa15.7■□□□□ 0.1
LMO3-223ENST00000540590 C9orf78Q9NZ63 289 aaPredicted RBP15.7■□□□□ 0.1
LMO3-223ENST00000540590 ZNF652Q9Y2D9 606 aa15.7■□□□□ 0.1
LMO3-223ENST00000540590 USP42Q9H9J4 1324 aaKnown RBP15.69■□□□□ 0.1
LMO3-223ENST00000540590 COL24A1Q17RW2 1714 aa15.69■□□□□ 0.1
LMO3-223ENST00000540590 ZPR1O75312 459 aa15.69■□□□□ 0.1
LMO3-223ENST00000540590 UBTFL1P0CB47 393 aaPredicted RBP15.69■□□□□ 0.1
LMO3-223ENST00000540590 RFC4P35249 363 aa15.69■□□□□ 0.1
LMO3-223ENST00000540590 B4GALNT3Q6L9W6 998 aa15.69■□□□□ 0.1
LMO3-223ENST00000540590 CCDC136Q96JN2 1154 aa15.69■□□□□ 0.1
LMO3-223ENST00000540590 ANO8Q9HCE9 1232 aaPredicted RBP15.69■□□□□ 0.1
LMO3-223ENST00000540590 CWC25Q9NXE8 425 aaPredicted RBP15.69■□□□□ 0.1
LMO3-223ENST00000540590 GNAI2P04899 355 aa15.68■□□□□ 0.1
LMO3-223ENST00000540590 NLRP10Q86W26 655 aa15.68■□□□□ 0.1
LMO3-223ENST00000540590 UPF1Q92900 1129 aaKnown RBP eCLIP15.68■□□□□ 0.1
LMO3-223ENST00000540590 TFCP2L1Q9NZI6 479 aa15.68■□□□□ 0.1
LMO3-223ENST00000540590 UBN2Q6ZU65 1347 aa15.68■□□□□ 0.1
LMO3-223ENST00000540590 LRRFIP2Q9Y608 721 aaKnown RBP15.67■□□□□ 0.1
LMO3-223ENST00000540590 MYH3P11055 1940 aa15.66■□□□□ 0.1
LMO3-223ENST00000540590 H7C1W4 665 aa15.66■□□□□ 0.1
LMO3-223ENST00000540590 CASP7P55210 303 aa15.66■□□□□ 0.1
LMO3-223ENST00000540590 SLC15A2Q16348 729 aa15.66■□□□□ 0.1
LMO3-223ENST00000540590 UBE3BQ7Z3V4 1068 aa15.66■□□□□ 0.1
LMO3-223ENST00000540590 JARID2Q92833 1246 aaPredicted RBP15.66■□□□□ 0.1
LMO3-223ENST00000540590 SUCLG2Q96I99 432 aa15.66■□□□□ 0.1
LMO3-223ENST00000540590 STK32BQ9NY57 414 aa15.66■□□□□ 0.1
LMO3-223ENST00000540590 NIP7Q9Y221 180 aaKnown RBP eCLIP15.66■□□□□ 0.1
LMO3-223ENST00000540590 LAMB2P55268 1798 aa15.66■□□□□ 0.1
LMO3-223ENST00000540590 PNPLA7Q6ZV29 1317 aa15.66■□□□□ 0.1
LMO3-223ENST00000540590 PCCAP05165 728 aaPredicted RBP15.65■□□□□ 0.1
LMO3-223ENST00000540590 PARP10Q53GL7 1025 aa15.65■□□□□ 0.1
LMO3-223ENST00000540590 TBC1D9BQ66K14 1250 aa15.65■□□□□ 0.1
LMO3-223ENST00000540590 CEP85Q6P2H3 762 aa15.65■□□□□ 0.1
LMO3-223ENST00000540590 COL23A1Q86Y22 540 aaPredicted RBP15.65■□□□□ 0.1
LMO3-223ENST00000540590 DDX60Q8IY21 1712 aaKnown RBP15.65■□□□□ 0.1
LMO3-223ENST00000540590 CASZ1Q86V15 1759 aa15.64■□□□□ 0.1
LMO3-223ENST00000540590 GYS1P13807 737 aa15.64■□□□□ 0.09
LMO3-223ENST00000540590 HSP90B1P14625 803 aaKnown RBP15.64■□□□□ 0.09
LMO3-223ENST00000540590 RTL5Q5HYW3 569 aaPredicted RBP15.64■□□□□ 0.09
LMO3-223ENST00000540590 SUSD4Q5VX71 490 aa15.64■□□□□ 0.09
LMO3-223ENST00000540590 SIRT2Q8IXJ6 389 aa15.64■□□□□ 0.09
LMO3-223ENST00000540590 ANKRD44Q8N8A2 993 aa15.64■□□□□ 0.09
LMO3-223ENST00000540590 KAZALD1Q96I82 304 aa15.64■□□□□ 0.09
LMO3-223ENST00000540590 IGHDP01880 384 aa15.63■□□□□ 0.09
LMO3-223ENST00000540590 BICDL1Q6ZP65 573 aa15.63■□□□□ 0.09
LMO3-223ENST00000540590 ILDR2Q71H61 639 aa15.63■□□□□ 0.09
LMO3-223ENST00000540590 RPAP2Q8IXW5 612 aaPredicted RBP15.63■□□□□ 0.09
LMO3-223ENST00000540590 ZBTB38Q8NAP3 1195 aaPredicted RBP15.63■□□□□ 0.09
LMO3-223ENST00000540590 CDHR2Q9BYE9 1310 aa15.63■□□□□ 0.09
LMO3-223ENST00000540590 SPDYE2BA6NHP3 402 aa15.62■□□□□ 0.09
LMO3-223ENST00000540590 FAM177BA6PVY3 158 aa15.62■□□□□ 0.09
LMO3-223ENST00000540590 NTSR2O95665 410 aa15.62■□□□□ 0.09
LMO3-223ENST00000540590 SPDYE6P0CI01 402 aa15.62■□□□□ 0.09
LMO3-223ENST00000540590 ATP8B2P98198 1209 aa15.62■□□□□ 0.09
LMO3-223ENST00000540590 HDAC1Q13547 482 aaPredicted RBP15.62■□□□□ 0.09
LMO3-223ENST00000540590 SPDYE2Q495Y8 402 aa15.62■□□□□ 0.09
LMO3-223ENST00000540590 EPHA10Q5JZY3 1008 aa15.62■□□□□ 0.09
LMO3-223ENST00000540590 FAM89AQ96GI7 184 aa15.62■□□□□ 0.09
LMO3-223ENST00000540590 RWDD1Q9H446 243 aaPredicted RBP15.62■□□□□ 0.09
LMO3-223ENST00000540590 BICC1Q9H694 974 aaKnown RBP15.62■□□□□ 0.09
LMO3-223ENST00000540590 TRMT112Q9UI30 125 aaKnown RBP15.62■□□□□ 0.09
LMO3-223ENST00000540590 KDM2BQ8NHM5 1336 aa15.62■□□□□ 0.09
LMO3-223ENST00000540590 PPP1R42Q7Z4L9 355 aa15.61■□□□□ 0.09
LMO3-223ENST00000540590 SYNE4Q8N205 404 aa15.61■□□□□ 0.09
LMO3-223ENST00000540590 SETDB2Q96T68 719 aa15.61■□□□□ 0.09
LMO3-223ENST00000540590 UTP14AQ9BVJ6 771 aaKnown RBP15.61■□□□□ 0.09
LMO3-223ENST00000540590 PNMA6EA0A0J9YXQ4 647 aa15.6■□□□□ 0.09
LMO3-223ENST00000540590 MTX1Q13505 466 aa15.6■□□□□ 0.09
LMO3-223ENST00000540590 NFIXQ14938 502 aa15.6■□□□□ 0.09
LMO3-223ENST00000540590 SH3TC1Q8TE82 1336 aa15.6■□□□□ 0.09
LMO3-223ENST00000540590 FOXO4P98177 505 aa15.59■□□□□ 0.09
LMO3-223ENST00000540590 RABL6Q3YEC7 729 aaPredicted RBP15.59■□□□□ 0.09
LMO3-223ENST00000540590 CENPQQ7L2Z9 268 aaPredicted RBP15.59■□□□□ 0.09
LMO3-223ENST00000540590 PLA2G12BQ9BX93 195 aa15.59■□□□□ 0.09
LMO3-223ENST00000540590 CARMIL3Q8ND23 1372 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms