RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 USP27XA6NNY8 438 aa11.13□□□□□ -0.63
CLIP1-214ENST00000540539 KIF2AO00139 706 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-214ENST00000540539 CCT2P78371 535 aaKnown RBP11.13□□□□□ -0.63
CLIP1-214ENST00000540539 PLEKHO1Q53GL0 409 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-214ENST00000540539 TADA2BQ86TJ2 420 aa11.13□□□□□ -0.63
CLIP1-214ENST00000540539 NRBP1Q9UHY1 535 aa11.13□□□□□ -0.63
CLIP1-214ENST00000540539 ABCC11Q96J66 1382 aa11.13□□□□□ -0.63
CLIP1-214ENST00000540539 SASH3O75995 380 aa11.13□□□□□ -0.63
CLIP1-214ENST00000540539 IPO7O95373 1038 aaKnown RBP11.13□□□□□ -0.63
CLIP1-214ENST00000540539 PAX7P23759 505 aa11.13□□□□□ -0.63
CLIP1-214ENST00000540539 SMC1AQ14683 1233 aaKnown RBP11.13□□□□□ -0.63
CLIP1-214ENST00000540539 ARHGAP29Q52LW3 1261 aa11.13□□□□□ -0.63
CLIP1-214ENST00000540539 EFCAB13Q8IY85 973 aa11.13□□□□□ -0.63
CLIP1-214ENST00000540539 TATDN2Q93075 761 aa11.13□□□□□ -0.63
CLIP1-214ENST00000540539 FUCA2Q9BTY2 467 aa11.13□□□□□ -0.63
CLIP1-214ENST00000540539 BCL2L13Q9BXK5 485 aa11.13□□□□□ -0.63
CLIP1-214ENST00000540539 NUCKS1Q9H1E3 243 aaKnown RBP11.13□□□□□ -0.63
CLIP1-214ENST00000540539 JAKMIP3Q5VZ66 844 aa11.12□□□□□ -0.63
CLIP1-214ENST00000540539 KAT2BQ92831 832 aa11.12□□□□□ -0.63
CLIP1-214ENST00000540539 LNPKQ9C0E8 428 aa11.12□□□□□ -0.63
CLIP1-214ENST00000540539 PIK3R4Q99570 1358 aa11.12□□□□□ -0.63
CLIP1-214ENST00000540539 PTPRUQ92729 1446 aa11.12□□□□□ -0.63
CLIP1-214ENST00000540539 SEC31AO94979 1220 aaKnown RBP11.12□□□□□ -0.63
CLIP1-214ENST00000540539 BRD1O95696 1058 aa11.12□□□□□ -0.63
CLIP1-214ENST00000540539 MTA1Q13330 715 aa11.12□□□□□ -0.63
CLIP1-214ENST00000540539 PTPN14Q15678 1187 aa11.12□□□□□ -0.63
CLIP1-214ENST00000540539 CASC1Q6TDU7 716 aa11.12□□□□□ -0.63
CLIP1-214ENST00000540539 ETAA1Q9NY74 926 aa11.12□□□□□ -0.63
CLIP1-214ENST00000540539 CCDC171Q6TFL3 1326 aa11.12□□□□□ -0.63
CLIP1-214ENST00000540539 ZRSR1Q15695 479 aaKnown RBP11.11□□□□□ -0.63
CLIP1-214ENST00000540539 ANKRD45Q5TZF3 282 aa11.11□□□□□ -0.63
CLIP1-214ENST00000540539 PIK3R5Q8WYR1 880 aa11.11□□□□□ -0.63
CLIP1-214ENST00000540539 IRAK4Q9NWZ3 460 aa11.11□□□□□ -0.63
CLIP1-214ENST00000540539 AMOTL2Q9Y2J4 779 aa11.11□□□□□ -0.63
CLIP1-214ENST00000540539 CHD2O14647 1828 aaKnown RBP11.11□□□□□ -0.63
CLIP1-214ENST00000540539 AATKQ6ZMQ8 1374 aa11.11□□□□□ -0.63
CLIP1-214ENST00000540539 KNDC1Q76NI1 1749 aa11.11□□□□□ -0.63
CLIP1-214ENST00000540539 TECPR2O15040 1411 aa11.11□□□□□ -0.63
CLIP1-214ENST00000540539 RPS6KA5O75582 802 aa11.11□□□□□ -0.63
CLIP1-214ENST00000540539 MX1P20591 662 aa11.11□□□□□ -0.63
CLIP1-214ENST00000540539 PPP2R1AP30153 589 aa11.11□□□□□ -0.63
CLIP1-214ENST00000540539 TBC1D8BQ0IIM8 1120 aa11.11□□□□□ -0.63
CLIP1-214ENST00000540539 KCNV1Q6PIU1 500 aa11.11□□□□□ -0.63
CLIP1-214ENST00000540539 CACTINQ8WUQ7 758 aaKnown RBP11.11□□□□□ -0.63
CLIP1-214ENST00000540539 PRAM1Q96QH2 718 aa11.11□□□□□ -0.63
CLIP1-214ENST00000540539 TESK2Q96S53 571 aa11.11□□□□□ -0.63
CLIP1-214ENST00000540539 DLC1Q96QB1 1528 aa11.1□□□□□ -0.63
CLIP1-214ENST00000540539 TBC1D8O95759 1140 aa11.1□□□□□ -0.63
CLIP1-214ENST00000540539 CASTP20810 708 aaKnown RBP11.1□□□□□ -0.63
CLIP1-214ENST00000540539 NUCB1Q02818 461 aa11.1□□□□□ -0.63
CLIP1-214ENST00000540539 C1QTNF12Q5T7M4 302 aa11.1□□□□□ -0.63
CLIP1-214ENST00000540539 CPLX2Q6PUV4 134 aaKnown RBP11.1□□□□□ -0.63
CLIP1-214ENST00000540539 USP48Q86UV5 1035 aa11.1□□□□□ -0.63
CLIP1-214ENST00000540539 CCDC34Q96HJ3 373 aa11.1□□□□□ -0.63
CLIP1-214ENST00000540539 GNL3LQ9NVN8 582 aaKnown RBP11.1□□□□□ -0.63
CLIP1-214ENST00000540539 ARGLU1Q9NWB6 273 aaPredicted RBP11.1□□□□□ -0.63
CLIP1-214ENST00000540539 QRICH2Q9H0J4 1663 aa11.1□□□□□ -0.63
CLIP1-214ENST00000540539 MAFGO15525 162 aa11.1□□□□□ -0.63
CLIP1-214ENST00000540539 COQ9O75208 318 aa11.1□□□□□ -0.63
CLIP1-214ENST00000540539 SAFB2Q14151 953 aaKnown RBP eCLIP11.1□□□□□ -0.63
CLIP1-214ENST00000540539 FOXD4L6Q3SYB3 417 aaPredicted RBP11.1□□□□□ -0.63
CLIP1-214ENST00000540539 FOXD4L3Q6VB84 417 aaPredicted RBP11.1□□□□□ -0.63
CLIP1-214ENST00000540539 DNAJC14Q6Y2X3 702 aaPredicted RBP11.1□□□□□ -0.63
CLIP1-214ENST00000540539 GIMAP7Q8NHV1 300 aa11.1□□□□□ -0.63
CLIP1-214ENST00000540539 TACO1Q9BSH4 297 aaKnown RBP11.1□□□□□ -0.63
CLIP1-214ENST00000540539 XRN1Q8IZH2 1706 aaKnown RBP11.09□□□□□ -0.63
CLIP1-214ENST00000540539 ATP8B1O43520 1251 aa11.09□□□□□ -0.63
CLIP1-214ENST00000540539 HNRNPH1P31943 449 aaKnown RBP11.09□□□□□ -0.63
CLIP1-214ENST00000540539 ELF1P32519 619 aa11.09□□□□□ -0.63
CLIP1-214ENST00000540539 ADCY2Q08462 1091 aa11.09□□□□□ -0.63
CLIP1-214ENST00000540539 WAPLQ7Z5K2 1190 aa11.09□□□□□ -0.63
CLIP1-214ENST00000540539 ANKRD23Q86SG2 305 aa11.09□□□□□ -0.63
CLIP1-214ENST00000540539 MICALL1Q8N3F8 863 aa11.09□□□□□ -0.63
CLIP1-214ENST00000540539 L2HGDHQ9H9P8 463 aa11.09□□□□□ -0.63
CLIP1-214ENST00000540539 CPS1P31327 1500 aa11.09□□□□□ -0.63
CLIP1-214ENST00000540539 ROBO2Q9HCK4 1378 aa11.09□□□□□ -0.63
CLIP1-214ENST00000540539 KCNA6P17658 529 aa11.09□□□□□ -0.63
CLIP1-214ENST00000540539 ERCC3P19447 782 aa11.09□□□□□ -0.63
CLIP1-214ENST00000540539 GIMAP6Q6P9H5 292 aa11.09□□□□□ -0.63
CLIP1-214ENST00000540539 FILIP1Q7Z7B0 1213 aa11.09□□□□□ -0.63
CLIP1-214ENST00000540539 STAG1Q8WVM7 1258 aa11.09□□□□□ -0.63
CLIP1-214ENST00000540539 A0A087WUV0 522 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-214ENST00000540539 SGSM2O43147 1006 aa11.08□□□□□ -0.64
CLIP1-214ENST00000540539 AP1ARQ63HQ0 302 aa11.08□□□□□ -0.64
CLIP1-214ENST00000540539 GBP6Q6ZN66 633 aa11.08□□□□□ -0.64
CLIP1-214ENST00000540539 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.08□□□□□ -0.64
CLIP1-214ENST00000540539 DRC7Q8IY82 874 aa11.08□□□□□ -0.64
CLIP1-214ENST00000540539 THOC1Q96FV9 657 aaKnown RBP11.08□□□□□ -0.64
CLIP1-214ENST00000540539 PUS7Q96PZ0 661 aaKnown RBP11.08□□□□□ -0.64
CLIP1-214ENST00000540539 ORC3Q9UBD5 711 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-214ENST00000540539 FAM135BQ49AJ0 1406 aa11.08□□□□□ -0.64
CLIP1-214ENST00000540539 TCHHQ07283 1943 aa11.08□□□□□ -0.64
CLIP1-214ENST00000540539 ELP1O95163 1332 aa11.08□□□□□ -0.64
CLIP1-214ENST00000540539 TEX11Q8IYF3 940 aa11.08□□□□□ -0.64
CLIP1-214ENST00000540539 PAIP2Q9BPZ3 127 aaKnown RBP11.08□□□□□ -0.64
CLIP1-214ENST00000540539 SBNO2Q9Y2G9 1366 aa11.07□□□□□ -0.64
CLIP1-214ENST00000540539 H3BQF6 201 aa11.07□□□□□ -0.64
CLIP1-214ENST00000540539 CCDC96Q2M329 555 aa11.07□□□□□ -0.64
CLIP1-214ENST00000540539 LRRC31Q6UY01 552 aa11.07□□□□□ -0.64
CLIP1-214ENST00000540539 JPH2Q9BR39 696 aaPredicted RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms