RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 GPTP24298 496 aa23.86■■□□□ 1.41
TNFRSF1A-213ENST00000540022 TRIM28Q13263 835 aaKnown RBP23.86■■□□□ 1.41
TNFRSF1A-213ENST00000540022 ZNF34Q8IZ26 560 aa23.86■■□□□ 1.41
TNFRSF1A-213ENST00000540022 MEIS3Q99687 375 aa23.86■■□□□ 1.41
TNFRSF1A-213ENST00000540022 USP44Q9H0E7 712 aa23.85■■□□□ 1.41
TNFRSF1A-213ENST00000540022 SCN7AQ01118 1682 aa23.85■■□□□ 1.41
TNFRSF1A-213ENST00000540022 GCKRQ14397 625 aa23.84■■□□□ 1.41
TNFRSF1A-213ENST00000540022 KLHL34Q8N239 644 aa23.84■■□□□ 1.41
TNFRSF1A-213ENST00000540022 CCDC191Q8NCU4 936 aa23.84■■□□□ 1.41
TNFRSF1A-213ENST00000540022 BCORQ6W2J9 1755 aa23.84■■□□□ 1.41
TNFRSF1A-213ENST00000540022 UBN2Q6ZU65 1347 aa23.84■■□□□ 1.41
TNFRSF1A-213ENST00000540022 NLRP10Q86W26 655 aa23.84■■□□□ 1.41
TNFRSF1A-213ENST00000540022 IBTKQ9P2D0 1353 aaPredicted RBP23.83■■□□□ 1.41
TNFRSF1A-213ENST00000540022 TBC1D9BQ66K14 1250 aa23.83■■□□□ 1.41
TNFRSF1A-213ENST00000540022 ZBTB40Q9NUA8 1239 aa23.83■■□□□ 1.41
TNFRSF1A-213ENST00000540022 CWC25Q9NXE8 425 aaPredicted RBP23.83■■□□□ 1.41
TNFRSF1A-213ENST00000540022 NIP7Q9Y221 180 aaKnown RBP eCLIP23.83■■□□□ 1.41
TNFRSF1A-213ENST00000540022 N4BP2Q86UW6 1770 aaPredicted RBP23.82■■□□□ 1.4
TNFRSF1A-213ENST00000540022 C9orf78Q9NZ63 289 aaPredicted RBP23.82■■□□□ 1.4
TNFRSF1A-213ENST00000540022 DCAF8L1A6NGE4 600 aa23.81■■□□□ 1.4
TNFRSF1A-213ENST00000540022 GRM8O00222 908 aa23.81■■□□□ 1.4
TNFRSF1A-213ENST00000540022 NBPF7P0C2Y1 421 aaPredicted RBP23.81■■□□□ 1.4
TNFRSF1A-213ENST00000540022 BICDL1Q6ZP65 573 aa23.81■■□□□ 1.4
TNFRSF1A-213ENST00000540022 CHMP4BQ9H444 224 aaKnown RBP23.81■■□□□ 1.4
TNFRSF1A-213ENST00000540022 CHD4Q14839 1912 aa23.81■■□□□ 1.4
TNFRSF1A-213ENST00000540022 GTF3C3Q9Y5Q9 886 aa23.8■■□□□ 1.4
TNFRSF1A-213ENST00000540022 UTYO14607 1347 aa23.8■■□□□ 1.4
TNFRSF1A-213ENST00000540022 GNAI3P08754 354 aa23.79■■□□□ 1.4
TNFRSF1A-213ENST00000540022 SUSD4Q5VX71 490 aa23.79■■□□□ 1.4
TNFRSF1A-213ENST00000540022 NLGN2Q8NFZ4 835 aa23.79■■□□□ 1.4
TNFRSF1A-213ENST00000540022 JARID2Q92833 1246 aaPredicted RBP23.79■■□□□ 1.4
TNFRSF1A-213ENST00000540022 NUP98P52948 1817 aa23.79■■□□□ 1.4
TNFRSF1A-213ENST00000540022 H7C1W4 665 aa23.79■■□□□ 1.4
TNFRSF1A-213ENST00000540022 NFIXQ14938 502 aa23.79■■□□□ 1.4
TNFRSF1A-213ENST00000540022 PARP10Q53GL7 1025 aa23.79■■□□□ 1.4
TNFRSF1A-213ENST00000540022 ERICH6BQ5W0A0 696 aa23.79■■□□□ 1.4
TNFRSF1A-213ENST00000540022 NLGN1Q8N2Q7 840 aa23.79■■□□□ 1.4
TNFRSF1A-213ENST00000540022 UBTFL1P0CB47 393 aaPredicted RBP23.78■■□□□ 1.4
TNFRSF1A-213ENST00000540022 TM4SF1P30408 202 aa23.78■■□□□ 1.4
TNFRSF1A-213ENST00000540022 DDR1Q08345 913 aa23.78■■□□□ 1.4
TNFRSF1A-213ENST00000540022 C1orf115Q9H7X2 142 aa23.78■■□□□ 1.4
TNFRSF1A-213ENST00000540022 MMP10P09238 476 aa23.77■■□□□ 1.4
TNFRSF1A-213ENST00000540022 CASP7P55210 303 aa23.77■■□□□ 1.4
TNFRSF1A-213ENST00000540022 AAMPQ13685 434 aa23.77■■□□□ 1.4
TNFRSF1A-213ENST00000540022 RTL5Q5HYW3 569 aaPredicted RBP23.77■■□□□ 1.4
TNFRSF1A-213ENST00000540022 UBE3BQ7Z3V4 1068 aa23.77■■□□□ 1.4
TNFRSF1A-213ENST00000540022 SETDB2Q96T68 719 aa23.77■■□□□ 1.4
TNFRSF1A-213ENST00000540022 FAM177BA6PVY3 158 aa23.76■■□□□ 1.39
TNFRSF1A-213ENST00000540022 ZBTB38Q8NAP3 1195 aaPredicted RBP23.76■■□□□ 1.39
TNFRSF1A-213ENST00000540022 TRMT112Q9UI30 125 aaKnown RBP23.76■■□□□ 1.39
TNFRSF1A-213ENST00000540022 ANKRD36CQ5JPF3 1778 aa23.76■■□□□ 1.39
TNFRSF1A-213ENST00000540022 PCCAP05165 728 aaPredicted RBP23.75■■□□□ 1.39
TNFRSF1A-213ENST00000540022 FAM89AQ96GI7 184 aa23.75■■□□□ 1.39
TNFRSF1A-213ENST00000540022 NTSR2O95665 410 aa23.74■■□□□ 1.39
TNFRSF1A-213ENST00000540022 GNAI2P04899 355 aa23.74■■□□□ 1.39
TNFRSF1A-213ENST00000540022 PPP1R42Q7Z4L9 355 aa23.74■■□□□ 1.39
TNFRSF1A-213ENST00000540022 SYNE4Q8N205 404 aa23.74■■□□□ 1.39
TNFRSF1A-213ENST00000540022 SUCLG2Q96I99 432 aa23.74■■□□□ 1.39
TNFRSF1A-213ENST00000540022 UTP14AQ9BVJ6 771 aaKnown RBP23.74■■□□□ 1.39
TNFRSF1A-213ENST00000540022 LRRFIP2Q9Y608 721 aaKnown RBP23.74■■□□□ 1.39
TNFRSF1A-213ENST00000540022 KIF13BQ9NQT8 1826 aa23.74■■□□□ 1.39
TNFRSF1A-213ENST00000540022 POLRMTO00411 1230 aaKnown RBP23.74■■□□□ 1.39
TNFRSF1A-213ENST00000540022 PCDHB15Q9Y5E8 787 aa23.74■■□□□ 1.39
TNFRSF1A-213ENST00000540022 CD2APQ9Y5K6 639 aa23.74■■□□□ 1.39
TNFRSF1A-213ENST00000540022 KAZALD1Q96I82 304 aa23.73■■□□□ 1.39
TNFRSF1A-213ENST00000540022 AFDNP55196 1824 aaKnown RBP23.73■■□□□ 1.39
TNFRSF1A-213ENST00000540022 CARMIL3Q8ND23 1372 aa23.72■■□□□ 1.39
TNFRSF1A-213ENST00000540022 SH3TC1Q8TE82 1336 aa23.71■■□□□ 1.39
TNFRSF1A-213ENST00000540022 NUTM1Q86Y26 1132 aa23.7■■□□□ 1.38
TNFRSF1A-213ENST00000540022 CDHR2Q9BYE9 1310 aa23.7■■□□□ 1.38
TNFRSF1A-213ENST00000540022 SERPINB2P05120 415 aa23.69■■□□□ 1.38
TNFRSF1A-213ENST00000540022 EPHA10Q5JZY3 1008 aa23.69■■□□□ 1.38
TNFRSF1A-213ENST00000540022 NBPF5PQ86XG9 351 aaPredicted RBP23.69■■□□□ 1.38
TNFRSF1A-213ENST00000540022 CCDC24Q8N4L8 307 aa23.69■■□□□ 1.38
TNFRSF1A-213ENST00000540022 HDAC5Q9UQL6 1122 aa23.69■■□□□ 1.38
TNFRSF1A-213ENST00000540022 KIAA1551Q9HCM1 1747 aa23.69■■□□□ 1.38
TNFRSF1A-213ENST00000540022 IRS4O14654 1257 aaPredicted RBP23.69■■□□□ 1.38
TNFRSF1A-213ENST00000540022 GPR162Q16538 588 aa23.69■■□□□ 1.38
TNFRSF1A-213ENST00000540022 CEP85Q6P2H3 762 aa23.69■■□□□ 1.38
TNFRSF1A-213ENST00000540022 NYXQ9GZU5 481 aa23.69■■□□□ 1.38
TNFRSF1A-213ENST00000540022 BICC1Q9H694 974 aaKnown RBP23.69■■□□□ 1.38
TNFRSF1A-213ENST00000540022 PPP4R2Q9NY27 417 aa23.69■■□□□ 1.38
TNFRSF1A-213ENST00000540022 PARP3Q9Y6F1 533 aa23.69■■□□□ 1.38
TNFRSF1A-213ENST00000540022 YY1P25490 414 aa23.68■■□□□ 1.38
TNFRSF1A-213ENST00000540022 ERFEQ4G0M1 354 aa23.68■■□□□ 1.38
TNFRSF1A-213ENST00000540022 TPTE2Q6XPS3 522 aa23.68■■□□□ 1.38
TNFRSF1A-213ENST00000540022 FOXO4P98177 505 aa23.67■■□□□ 1.38
TNFRSF1A-213ENST00000540022 SIRT2Q8IXJ6 389 aa23.67■■□□□ 1.38
TNFRSF1A-213ENST00000540022 ANKRD44Q8N8A2 993 aa23.67■■□□□ 1.38
TNFRSF1A-213ENST00000540022 PLA2G12BQ9BX93 195 aa23.67■■□□□ 1.38
TNFRSF1A-213ENST00000540022 HCLS1P14317 486 aaPredicted RBP23.66■■□□□ 1.38
TNFRSF1A-213ENST00000540022 RPAP2Q8IXW5 612 aaPredicted RBP23.66■■□□□ 1.38
TNFRSF1A-213ENST00000540022 ABCC12Q96J65 1359 aa23.65■■□□□ 1.38
TNFRSF1A-213ENST00000540022 GTF2E1P29083 439 aaPredicted RBP23.65■■□□□ 1.38
TNFRSF1A-213ENST00000540022 PRR5LQ6MZQ0 368 aa23.65■■□□□ 1.38
TNFRSF1A-213ENST00000540022 PELP1Q8IZL8 1130 aaKnown RBP23.65■■□□□ 1.38
TNFRSF1A-213ENST00000540022 YBX3P16989 372 aaKnown RBP eCLIP23.64■■□□□ 1.38
TNFRSF1A-213ENST00000540022 RABL6Q3YEC7 729 aaPredicted RBP23.64■■□□□ 1.38
TNFRSF1A-213ENST00000540022 CNBD1Q8NA66 436 aa23.64■■□□□ 1.38
TNFRSF1A-213ENST00000540022 PNMA6EA0A0J9YXQ4 647 aa23.64■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms