RNA–Protein interactions for RNA: ENST00000539599.5

UBE3B-210, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best)

Gene UBE3B, Length 2,763 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-210ENST00000539599 TPCN1Q9ULQ1 816 aa16.9■□□□□ 0.3
UBE3B-210ENST00000539599 CCDC171Q6TFL3 1326 aa16.9■□□□□ 0.3
UBE3B-210ENST00000539599 USP42Q9H9J4 1324 aaKnown RBP16.9■□□□□ 0.3
UBE3B-210ENST00000539599 NEURL1BA8MQ27 555 aa16.9■□□□□ 0.3
UBE3B-210ENST00000539599 CREB3L3Q68CJ9 461 aa16.9■□□□□ 0.3
UBE3B-210ENST00000539599 PDLIM2Q96JY6 352 aa16.9■□□□□ 0.3
UBE3B-210ENST00000539599 ZNF830Q96NB3 372 aaPredicted RBP16.89■□□□□ 0.3
UBE3B-210ENST00000539599 SEC62Q99442 399 aaKnown RBP16.89■□□□□ 0.3
UBE3B-210ENST00000539599 TSPY26PQ9H489 355 aa16.89■□□□□ 0.29
UBE3B-210ENST00000539599 PPFIA3O75145 1194 aa16.89■□□□□ 0.29
UBE3B-210ENST00000539599 NECTIN1Q15223 517 aa16.89■□□□□ 0.29
UBE3B-210ENST00000539599 UBE3BQ7Z3V4 1068 aa16.89■□□□□ 0.29
UBE3B-210ENST00000539599 SLC52A2Q9HAB3 445 aa16.89■□□□□ 0.29
UBE3B-210ENST00000539599 NPHP3Q7Z494 1330 aa16.88■□□□□ 0.29
UBE3B-210ENST00000539599 NPHP4O75161 1426 aaPredicted RBP16.88■□□□□ 0.29
UBE3B-210ENST00000539599 MEGF6O75095 1541 aa16.88■□□□□ 0.29
UBE3B-210ENST00000539599 F13A1P00488 732 aa16.88■□□□□ 0.29
UBE3B-210ENST00000539599 EVI5LQ96CN4 794 aa16.88■□□□□ 0.29
UBE3B-210ENST00000539599 PHKG2P15735 406 aa16.88■□□□□ 0.29
UBE3B-210ENST00000539599 GCKRQ14397 625 aa16.88■□□□□ 0.29
UBE3B-210ENST00000539599 CYP46A1Q9Y6A2 500 aa16.88■□□□□ 0.29
UBE3B-210ENST00000539599 C5P01031 1676 aa16.87■□□□□ 0.29
UBE3B-210ENST00000539599 SLC27A2O14975 620 aa16.87■□□□□ 0.29
UBE3B-210ENST00000539599 CYP27B1O15528 508 aa16.87■□□□□ 0.29
UBE3B-210ENST00000539599 HCLS1P14317 486 aaPredicted RBP16.87■□□□□ 0.29
UBE3B-210ENST00000539599 GIMAP6Q6P9H5 292 aa16.87■□□□□ 0.29
UBE3B-210ENST00000539599 GPATCH3Q96I76 525 aa16.87■□□□□ 0.29
UBE3B-210ENST00000539599 DDX58O95786 925 aaKnown RBP16.87■□□□□ 0.29
UBE3B-210ENST00000539599 TFCP2Q12800 502 aa16.87■□□□□ 0.29
UBE3B-210ENST00000539599 DNAJC2Q99543 621 aaKnown RBP16.87■□□□□ 0.29
UBE3B-210ENST00000539599 MTMR6Q9Y217 621 aa16.87■□□□□ 0.29
UBE3B-210ENST00000539599 COL15A1P39059 1388 aa16.86■□□□□ 0.29
UBE3B-210ENST00000539599 RUFY2Q8WXA3 655 aa16.86■□□□□ 0.29
UBE3B-210ENST00000539599 LRRC2Q9BYS8 371 aa16.86■□□□□ 0.29
UBE3B-210ENST00000539599 ZSWIM6Q9HCJ5 1215 aa16.86■□□□□ 0.29
UBE3B-210ENST00000539599 USP25Q9UHP3 1055 aa16.86■□□□□ 0.29
UBE3B-210ENST00000539599 DBNLQ9UJU6 430 aaKnown RBP16.86■□□□□ 0.29
UBE3B-210ENST00000539599 CRYBG1Q9Y4K1 1723 aa16.86■□□□□ 0.29
UBE3B-210ENST00000539599 PLCB2Q00722 1185 aa16.86■□□□□ 0.29
UBE3B-210ENST00000539599 CDC37L1Q7L3B6 337 aa16.86■□□□□ 0.29
UBE3B-210ENST00000539599 SLIT3O75094 1523 aa16.86■□□□□ 0.29
UBE3B-210ENST00000539599 ERC1Q8IUD2 1116 aa16.85■□□□□ 0.29
UBE3B-210ENST00000539599 R3HCC1Q9Y3T6 440 aaKnown RBP16.85■□□□□ 0.29
UBE3B-210ENST00000539599 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.85■□□□□ 0.29
UBE3B-210ENST00000539599 FOSBP53539 338 aa16.84■□□□□ 0.29
UBE3B-210ENST00000539599 ANKRD13DQ6ZTN6 518 aa16.84■□□□□ 0.29
UBE3B-210ENST00000539599 DDX46Q7L014 1031 aaKnown RBP16.84■□□□□ 0.29
UBE3B-210ENST00000539599 C17orf53Q8N3J3 647 aaPredicted RBP16.84■□□□□ 0.29
UBE3B-210ENST00000539599 C1orf167Q5SNV9 1468 aa16.84■□□□□ 0.29
UBE3B-210ENST00000539599 TATP17735 454 aaPredicted RBP16.84■□□□□ 0.29
UBE3B-210ENST00000539599 NEXNQ0ZGT2 675 aa16.84■□□□□ 0.29
UBE3B-210ENST00000539599 VPS53Q5VIR6 699 aa16.84■□□□□ 0.29
UBE3B-210ENST00000539599 LARP1Q6PKG0 1096 aaKnown RBP16.84■□□□□ 0.29
UBE3B-210ENST00000539599 MAP4K1Q92918 833 aa16.84■□□□□ 0.29
UBE3B-210ENST00000539599 DBNDD2Q9BQY9 259 aa16.84■□□□□ 0.29
UBE3B-210ENST00000539599 NCAPD2Q15021 1401 aa16.84■□□□□ 0.29
UBE3B-210ENST00000539599 A0A0G2JLW4 131 aa16.83■□□□□ 0.29
UBE3B-210ENST00000539599 LRP10Q7Z4F1 713 aa16.83■□□□□ 0.29
UBE3B-210ENST00000539599 NOL7Q9UMY1 257 aaKnown RBP16.83■□□□□ 0.29
UBE3B-210ENST00000539599 ZKSCAN1P17029 563 aaPredicted RBP16.83■□□□□ 0.28
UBE3B-210ENST00000539599 PTPN12Q05209 780 aaKnown RBP16.83■□□□□ 0.28
UBE3B-210ENST00000539599 METTL22Q9BUU2 404 aaPredicted RBP16.83■□□□□ 0.28
UBE3B-210ENST00000539599 UTYO14607 1347 aa16.83■□□□□ 0.28
UBE3B-210ENST00000539599 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.83■□□□□ 0.28
UBE3B-210ENST00000539599 PTMAP06454 111 aaKnown RBP16.83■□□□□ 0.28
UBE3B-210ENST00000539599 SIPA1L3O60292 1781 aaPredicted RBP16.82■□□□□ 0.28
UBE3B-210ENST00000539599 A0A087WZG4 1122 aa16.82■□□□□ 0.28
UBE3B-210ENST00000539599 TTC5Q8N0Z6 440 aa16.82■□□□□ 0.28
UBE3B-210ENST00000539599 TFIP11Q9UBB9 837 aaKnown RBP16.82■□□□□ 0.28
UBE3B-210ENST00000539599 JAK2O60674 1132 aa16.82■□□□□ 0.28
UBE3B-210ENST00000539599 CAMK4Q16566 473 aa16.82■□□□□ 0.28
UBE3B-210ENST00000539599 DDX11Q96FC9 970 aa16.82■□□□□ 0.28
UBE3B-210ENST00000539599 TRPM3Q9HCF6 1732 aaPredicted RBP16.81■□□□□ 0.28
UBE3B-210ENST00000539599 PRKCSHP14314 528 aaPredicted RBP16.81■□□□□ 0.28
UBE3B-210ENST00000539599 RFX5P48382 616 aaPredicted RBP16.81■□□□□ 0.28
UBE3B-210ENST00000539599 TOB2Q14106 344 aaPredicted RBP16.81■□□□□ 0.28
UBE3B-210ENST00000539599 PHRF1Q9P1Y6 1649 aaKnown RBP16.81■□□□□ 0.28
UBE3B-210ENST00000539599 RBM10P98175 930 aaKnown RBP16.81■□□□□ 0.28
UBE3B-210ENST00000539599 LARP1BQ659C4 914 aaKnown RBP16.81■□□□□ 0.28
UBE3B-210ENST00000539599 TTLL7Q6ZT98 887 aa16.81■□□□□ 0.28
UBE3B-210ENST00000539599 ZKSCAN5Q9Y2L8 839 aa16.81■□□□□ 0.28
UBE3B-210ENST00000539599 TNNI3KQ59H18 835 aa16.8■□□□□ 0.28
UBE3B-210ENST00000539599 SYAP1Q96A49 352 aaPredicted RBP16.8■□□□□ 0.28
UBE3B-210ENST00000539599 ZNF594Q96JF6 807 aaPredicted RBP16.8■□□□□ 0.28
UBE3B-210ENST00000539599 CCDC85AQ96PX6 553 aaPredicted RBP16.8■□□□□ 0.28
UBE3B-210ENST00000539599 FPGT-TNNI3KV9GXZ4 949 aa16.8■□□□□ 0.28
UBE3B-210ENST00000539599 AP5Z1O43299 807 aa16.8■□□□□ 0.28
UBE3B-210ENST00000539599 EPB41L2O43491 1005 aaKnown RBP16.8■□□□□ 0.28
UBE3B-210ENST00000539599 CCDC183Q5T5S1 534 aa16.8■□□□□ 0.28
UBE3B-210ENST00000539599 BLOC1S2Q6QNY1 142 aa16.8■□□□□ 0.28
UBE3B-210ENST00000539599 LMBR1LQ6UX01 489 aa16.8■□□□□ 0.28
UBE3B-210ENST00000539599 TTC6Q86TZ1 520 aa16.8■□□□□ 0.28
UBE3B-210ENST00000539599 IFNL2Q8IZJ0 200 aa16.8■□□□□ 0.28
UBE3B-210ENST00000539599 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.8■□□□□ 0.28
UBE3B-210ENST00000539599 OFD1O75665 1012 aa16.79■□□□□ 0.28
UBE3B-210ENST00000539599 UBE2HP62256 183 aa16.79■□□□□ 0.28
UBE3B-210ENST00000539599 CHMP4AQ9BY43 222 aa16.79■□□□□ 0.28
UBE3B-210ENST00000539599 C19orf44Q9H6X5 657 aa16.79■□□□□ 0.28
UBE3B-210ENST00000539599 TTC12Q9H892 705 aaPredicted RBP16.79■□□□□ 0.28
UBE3B-210ENST00000539599 ZNF330Q9Y3S2 320 aaPredicted RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms