RNA–Protein interactions for RNA: ENST00000539548.6

CDH13-204, Transcript of cadherin 13, humanhuman

TSL 2

Gene CDH13, Length 2,199 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-204ENST00000539548 SETD1BQ9UPS6 1966 aaKnown RBP11.52□□□□□ -0.57
CDH13-204ENST00000539548 VPS37CA5D8V6 355 aaPredicted RBP11.52□□□□□ -0.57
CDH13-204ENST00000539548 PDCP20941 246 aa11.52□□□□□ -0.57
CDH13-204ENST00000539548 AACSQ86V21 672 aa11.52□□□□□ -0.57
CDH13-204ENST00000539548 THEMISQ8N1K5 641 aaPredicted RBP11.52□□□□□ -0.57
CDH13-204ENST00000539548 NFAT5O94916 1531 aa11.52□□□□□ -0.57
CDH13-204ENST00000539548 KRT85P78386 507 aa11.51□□□□□ -0.57
CDH13-204ENST00000539548 ANKRD1Q15327 319 aa11.51□□□□□ -0.57
CDH13-204ENST00000539548 PLEKHO1Q53GL0 409 aaPredicted RBP11.51□□□□□ -0.57
CDH13-204ENST00000539548 NECAB1Q8N987 351 aa11.51□□□□□ -0.57
CDH13-204ENST00000539548 KIAA1524Q8TCG1 905 aa11.51□□□□□ -0.57
CDH13-204ENST00000539548 PA2G4Q9UQ80 394 aaKnown RBP11.51□□□□□ -0.57
CDH13-204ENST00000539548 UTYO14607 1347 aa11.51□□□□□ -0.57
CDH13-204ENST00000539548 HEG1Q9ULI3 1381 aa11.51□□□□□ -0.57
CDH13-204ENST00000539548 RGPD2P0DJD1 1756 aa11.51□□□□□ -0.57
CDH13-204ENST00000539548 SLC27A2O14975 620 aa11.51□□□□□ -0.57
CDH13-204ENST00000539548 SASH1O94885 1247 aa11.51□□□□□ -0.57
CDH13-204ENST00000539548 NMIQ13287 307 aaPredicted RBP11.51□□□□□ -0.57
CDH13-204ENST00000539548 ZNF530Q6P9A1 599 aaPredicted RBP11.51□□□□□ -0.57
CDH13-204ENST00000539548 TTC6Q86TZ1 520 aa11.51□□□□□ -0.57
CDH13-204ENST00000539548 PHRF1Q9P1Y6 1649 aaKnown RBP11.5□□□□□ -0.57
CDH13-204ENST00000539548 OVOS2A0A0G2JMS6 1433 aa11.5□□□□□ -0.57
CDH13-204ENST00000539548 NCAPD2Q15021 1401 aa11.5□□□□□ -0.57
CDH13-204ENST00000539548 GOLGA6L6A8MZA4 724 aa11.5□□□□□ -0.57
CDH13-204ENST00000539548 RNMTO43148 476 aaKnown RBP11.5□□□□□ -0.57
CDH13-204ENST00000539548 GIGYF1O75420 1035 aaPredicted RBP11.5□□□□□ -0.57
CDH13-204ENST00000539548 KCNA6P17658 529 aa11.5□□□□□ -0.57
CDH13-204ENST00000539548 KCNJ4P48050 445 aa11.5□□□□□ -0.57
CDH13-204ENST00000539548 G3BP1Q13283 466 aaKnown RBP eCLIP11.5□□□□□ -0.57
CDH13-204ENST00000539548 AMOTQ4VCS5 1084 aa11.5□□□□□ -0.57
CDH13-204ENST00000539548 C17orf53Q8N3J3 647 aaPredicted RBP11.5□□□□□ -0.57
CDH13-204ENST00000539548 FAM227BQ96M60 508 aa11.5□□□□□ -0.57
CDH13-204ENST00000539548 PHF8Q9UPP1 1060 aa11.5□□□□□ -0.57
CDH13-204ENST00000539548 MAP3K11Q16584 847 aa11.5□□□□□ -0.57
CDH13-204ENST00000539548 TSGA10IPQ3SY00 556 aa11.5□□□□□ -0.57
CDH13-204ENST00000539548 RNF20Q5VTR2 975 aa11.5□□□□□ -0.57
CDH13-204ENST00000539548 MPRIPQ6WCQ1 1025 aa11.5□□□□□ -0.57
CDH13-204ENST00000539548 C14orf37Q86TY3 774 aa11.5□□□□□ -0.57
CDH13-204ENST00000539548 LINS1Q8NG48 757 aa11.5□□□□□ -0.57
CDH13-204ENST00000539548 FAM200AQ8TCP9 573 aa11.5□□□□□ -0.57
CDH13-204ENST00000539548 EAF2Q96CJ1 260 aaPredicted RBP11.5□□□□□ -0.57
CDH13-204ENST00000539548 CCDC94Q9BW85 323 aaPredicted RBP11.5□□□□□ -0.57
CDH13-204ENST00000539548 KCNF1Q9H3M0 494 aa11.5□□□□□ -0.57
CDH13-204ENST00000539548 GRM8O00222 908 aa11.49□□□□□ -0.57
CDH13-204ENST00000539548 PLCB2Q00722 1185 aa11.49□□□□□ -0.57
CDH13-204ENST00000539548 BLOC1S2Q6QNY1 142 aa11.49□□□□□ -0.57
CDH13-204ENST00000539548 DDX54Q8TDD1 881 aaKnown RBP11.49□□□□□ -0.57
CDH13-204ENST00000539548 KAZALD1Q96I82 304 aa11.49□□□□□ -0.57
CDH13-204ENST00000539548 SCAND2PQ9GZW5 306 aaPredicted RBP11.49□□□□□ -0.57
CDH13-204ENST00000539548 NUP62CLQ9H1M0 184 aa11.49□□□□□ -0.57
CDH13-204ENST00000539548 NPHP4O75161 1426 aaPredicted RBP11.49□□□□□ -0.57
CDH13-204ENST00000539548 DTNBO60941 627 aa11.48□□□□□ -0.57
CDH13-204ENST00000539548 RPS6KB1P23443 525 aa11.48□□□□□ -0.57
CDH13-204ENST00000539548 PROSER3Q2NL68 480 aa11.48□□□□□ -0.57
CDH13-204ENST00000539548 CWF19L2Q2TBE0 894 aaKnown RBP11.48□□□□□ -0.57
CDH13-204ENST00000539548 CDC37L1Q7L3B6 337 aa11.48□□□□□ -0.57
CDH13-204ENST00000539548 SMAP1Q8IYB5 467 aaPredicted RBP11.48□□□□□ -0.57
CDH13-204ENST00000539548 KCNH5Q8NCM2 988 aa11.48□□□□□ -0.57
CDH13-204ENST00000539548 SUCLG2Q96I99 432 aa11.48□□□□□ -0.57
CDH13-204ENST00000539548 KIF3AQ9Y496 699 aa11.48□□□□□ -0.57
CDH13-204ENST00000539548 MRVI1Q9Y6F6 885 aa11.48□□□□□ -0.57
CDH13-204ENST00000539548 JCADQ9P266 1359 aa11.48□□□□□ -0.57
CDH13-204ENST00000539548 FER1L4A9Z1Z3 1794 aa11.48□□□□□ -0.57
CDH13-204ENST00000539548 LIG1P18858 919 aa11.48□□□□□ -0.57
CDH13-204ENST00000539548 TYRO3Q06418 890 aa11.48□□□□□ -0.57
CDH13-204ENST00000539548 ZNF710Q8N1W2 664 aa11.48□□□□□ -0.57
CDH13-204ENST00000539548 HMG20BQ9P0W2 317 aa11.48□□□□□ -0.57
CDH13-204ENST00000539548 PYCARDQ9ULZ3 195 aa11.48□□□□□ -0.57
CDH13-204ENST00000539548 MED23Q9ULK4 1368 aa11.47□□□□□ -0.57
CDH13-204ENST00000539548 A0A0D9SFI3 127 aa11.47□□□□□ -0.57
CDH13-204ENST00000539548 DDX58O95786 925 aaKnown RBP11.47□□□□□ -0.57
CDH13-204ENST00000539548 RBM43Q6ZSC3 357 aaKnown RBP11.47□□□□□ -0.57
CDH13-204ENST00000539548 CCDC8Q9H0W5 538 aaPredicted RBP11.47□□□□□ -0.57
CDH13-204ENST00000539548 BICC1Q9H694 974 aaKnown RBP11.47□□□□□ -0.57
CDH13-204ENST00000539548 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.47□□□□□ -0.57
CDH13-204ENST00000539548 SIPA1L3O60292 1781 aaPredicted RBP11.47□□□□□ -0.57
CDH13-204ENST00000539548 NPHP3Q7Z494 1330 aa11.47□□□□□ -0.57
CDH13-204ENST00000539548 ZBTB7CA1YPR0 619 aa11.47□□□□□ -0.57
CDH13-204ENST00000539548 TOB2Q14106 344 aaPredicted RBP11.47□□□□□ -0.57
CDH13-204ENST00000539548 C1orf141Q5JVX7 400 aa11.47□□□□□ -0.57
CDH13-204ENST00000539548 FERMT3Q86UX7 667 aa11.47□□□□□ -0.57
CDH13-204ENST00000539548 CERKQ8TCT0 537 aa11.47□□□□□ -0.57
CDH13-204ENST00000539548 FSD1Q9BTV5 496 aa11.47□□□□□ -0.57
CDH13-204ENST00000539548 DDX19AQ9NUU7 478 aaKnown RBP11.47□□□□□ -0.57
CDH13-204ENST00000539548 COL9A3Q14050 684 aaPredicted RBP11.46□□□□□ -0.57
CDH13-204ENST00000539548 USPL1Q5W0Q7 1092 aa11.46□□□□□ -0.57
CDH13-204ENST00000539548 LARP1Q6PKG0 1096 aaKnown RBP11.46□□□□□ -0.57
CDH13-204ENST00000539548 SPC24Q8NBT2 197 aa11.46□□□□□ -0.57
CDH13-204ENST00000539548 LEO1Q8WVC0 666 aaPredicted RBP11.46□□□□□ -0.57
CDH13-204ENST00000539548 JARID2Q92833 1246 aaPredicted RBP11.46□□□□□ -0.57
CDH13-204ENST00000539548 LRRC59Q96AG4 307 aaKnown RBP11.46□□□□□ -0.57
CDH13-204ENST00000539548 SPATA32Q96LK8 384 aa11.46□□□□□ -0.57
CDH13-204ENST00000539548 TNMDQ9H2S6 317 aa11.46□□□□□ -0.57
CDH13-204ENST00000539548 DDX21Q9NR30 783 aaKnown RBP eCLIP11.46□□□□□ -0.57
CDH13-204ENST00000539548 GOLGA6L4A6NEF3 574 aa11.45□□□□□ -0.58
CDH13-204ENST00000539548 CAMK4Q16566 473 aa11.45□□□□□ -0.58
CDH13-204ENST00000539548 FAM173BQ6P4H8 233 aa11.45□□□□□ -0.58
CDH13-204ENST00000539548 TSC1Q92574 1164 aa11.45□□□□□ -0.58
CDH13-204ENST00000539548 BOLA2Q9H3K6 86 aa11.45□□□□□ -0.58
CDH13-204ENST00000539548 CLSTN2Q9H4D0 955 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms