RNA–Protein interactions for RNA: ENST00000538827.5

CD4-208, Transcript of CD4 molecule, humanhuman

TSL 1 (best)

Gene CD4, Length 985 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD4-208ENST00000538827 CAMTA2O94983 1202 aa17.75■□□□□ 0.43
CD4-208ENST00000538827 YBX3P16989 372 aaKnown RBP eCLIP17.75■□□□□ 0.43
CD4-208ENST00000538827 GPTP24298 496 aa17.75■□□□□ 0.43
CD4-208ENST00000538827 ZNF827Q17R98 1081 aa17.75■□□□□ 0.43
CD4-208ENST00000538827 GIGYF2Q6Y7W6 1299 aaKnown RBP17.75■□□□□ 0.43
CD4-208ENST00000538827 AMIGO3Q86WK7 504 aa17.75■□□□□ 0.43
CD4-208ENST00000538827 NLGN2Q8NFZ4 835 aa17.75■□□□□ 0.43
CD4-208ENST00000538827 ERVV-1B6SEH8 477 aa17.74■□□□□ 0.43
CD4-208ENST00000538827 TCIRG1Q13488 830 aa17.74■□□□□ 0.43
CD4-208ENST00000538827 CWC25Q9NXE8 425 aaPredicted RBP17.74■□□□□ 0.43
CD4-208ENST00000538827 ZNF652Q9Y2D9 606 aa17.74■□□□□ 0.43
CD4-208ENST00000538827 GRM8O00222 908 aa17.73■□□□□ 0.43
CD4-208ENST00000538827 ZPR1O75312 459 aa17.73■□□□□ 0.43
CD4-208ENST00000538827 GNAI2P04899 355 aa17.73■□□□□ 0.43
CD4-208ENST00000538827 RFC4P35249 363 aa17.73■□□□□ 0.43
CD4-208ENST00000538827 GCKRQ14397 625 aa17.73■□□□□ 0.43
CD4-208ENST00000538827 AKT1S1Q96B36 256 aa17.73■□□□□ 0.43
CD4-208ENST00000538827 USP44Q9H0E7 712 aa17.73■□□□□ 0.43
CD4-208ENST00000538827 SRP68Q9UHB9 627 aaKnown RBP17.73■□□□□ 0.43
CD4-208ENST00000538827 PCDHB15Q9Y5E8 787 aa17.73■□□□□ 0.43
CD4-208ENST00000538827 QSER1Q2KHR3 1735 aa17.72■□□□□ 0.43
CD4-208ENST00000538827 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.72■□□□□ 0.43
CD4-208ENST00000538827 ADRA2BP18089 450 aa17.72■□□□□ 0.43
CD4-208ENST00000538827 SSFA2P28290 1259 aa17.72■□□□□ 0.43
CD4-208ENST00000538827 APLP1P51693 650 aa17.72■□□□□ 0.43
CD4-208ENST00000538827 TRAPPC3LQ5T215 181 aa17.72■□□□□ 0.43
CD4-208ENST00000538827 USPL1Q5W0Q7 1092 aa17.72■□□□□ 0.43
CD4-208ENST00000538827 ISCA1Q9BUE6 129 aa17.72■□□□□ 0.43
CD4-208ENST00000538827 TFCP2L1Q9NZI6 479 aa17.72■□□□□ 0.43
CD4-208ENST00000538827 LRRFIP2Q9Y608 721 aaKnown RBP17.72■□□□□ 0.43
CD4-208ENST00000538827 COL24A1Q17RW2 1714 aa17.72■□□□□ 0.43
CD4-208ENST00000538827 NBPF7P0C2Y1 421 aaPredicted RBP17.71■□□□□ 0.43
CD4-208ENST00000538827 CCDC191Q8NCU4 936 aa17.71■□□□□ 0.43
CD4-208ENST00000538827 JARID2Q92833 1246 aaPredicted RBP17.71■□□□□ 0.43
CD4-208ENST00000538827 ARHGEF1Q92888 912 aaKnown RBP17.71■□□□□ 0.43
CD4-208ENST00000538827 NARFQ9UHQ1 456 aa17.71■□□□□ 0.43
CD4-208ENST00000538827 LAMB2P55268 1798 aa17.71■□□□□ 0.43
CD4-208ENST00000538827 USP42Q9H9J4 1324 aaKnown RBP17.71■□□□□ 0.42
CD4-208ENST00000538827 MSH5O43196 834 aa17.7■□□□□ 0.42
CD4-208ENST00000538827 UBE3BQ7Z3V4 1068 aa17.7■□□□□ 0.42
CD4-208ENST00000538827 PNPLA7Q6ZV29 1317 aa17.7■□□□□ 0.42
CD4-208ENST00000538827 IBTKQ9P2D0 1353 aaPredicted RBP17.69■□□□□ 0.42
CD4-208ENST00000538827 FAM177BA6PVY3 158 aa17.69■□□□□ 0.42
CD4-208ENST00000538827 RTL5Q5HYW3 569 aaPredicted RBP17.69■□□□□ 0.42
CD4-208ENST00000538827 BICDL1Q6ZP65 573 aa17.69■□□□□ 0.42
CD4-208ENST00000538827 SUCLG2Q96I99 432 aa17.69■□□□□ 0.42
CD4-208ENST00000538827 NIP7Q9Y221 180 aaKnown RBP eCLIP17.69■□□□□ 0.42
CD4-208ENST00000538827 UBN2Q6ZU65 1347 aa17.69■□□□□ 0.42
CD4-208ENST00000538827 MYH3P11055 1940 aa17.68■□□□□ 0.42
CD4-208ENST00000538827 CEP85Q6P2H3 762 aa17.68■□□□□ 0.42
CD4-208ENST00000538827 NLRP10Q86W26 655 aa17.68■□□□□ 0.42
CD4-208ENST00000538827 HDAC5Q9UQL6 1122 aa17.68■□□□□ 0.42
CD4-208ENST00000538827 ZNF34Q8IZ26 560 aa17.67■□□□□ 0.42
CD4-208ENST00000538827 RWDD1Q9H446 243 aaPredicted RBP17.67■□□□□ 0.42
CD4-208ENST00000538827 UTYO14607 1347 aa17.67■□□□□ 0.42
CD4-208ENST00000538827 PARP10Q53GL7 1025 aa17.66■□□□□ 0.42
CD4-208ENST00000538827 TBC1D9BQ66K14 1250 aa17.66■□□□□ 0.42
CD4-208ENST00000538827 CLEC4GQ6UXB4 293 aa17.66■□□□□ 0.42
CD4-208ENST00000538827 DNAJC5GQ8N7S2 189 aa17.66■□□□□ 0.42
CD4-208ENST00000538827 ANKRD44Q8N8A2 993 aa17.66■□□□□ 0.42
CD4-208ENST00000538827 BCL2L12Q9HB09 334 aa17.66■□□□□ 0.42
CD4-208ENST00000538827 DDX60Q8IY21 1712 aaKnown RBP17.66■□□□□ 0.42
CD4-208ENST00000538827 HMMRO75330 724 aa17.65■□□□□ 0.42
CD4-208ENST00000538827 IGHDP01880 384 aa17.65■□□□□ 0.42
CD4-208ENST00000538827 PCCAP05165 728 aaPredicted RBP17.65■□□□□ 0.42
CD4-208ENST00000538827 TRIM28Q13263 835 aaKnown RBP17.65■□□□□ 0.42
CD4-208ENST00000538827 CENPQQ7L2Z9 268 aaPredicted RBP17.65■□□□□ 0.42
CD4-208ENST00000538827 ZNF526Q8TF50 670 aaPredicted RBP17.65■□□□□ 0.42
CD4-208ENST00000538827 TRMT112Q9UI30 125 aaKnown RBP17.65■□□□□ 0.42
CD4-208ENST00000538827 H7C1W4 665 aa17.64■□□□□ 0.41
CD4-208ENST00000538827 RGL2O15211 777 aa17.64■□□□□ 0.41
CD4-208ENST00000538827 SUSD4Q5VX71 490 aa17.64■□□□□ 0.41
CD4-208ENST00000538827 COL23A1Q86Y22 540 aaPredicted RBP17.64■□□□□ 0.41
CD4-208ENST00000538827 RPAP2Q8IXW5 612 aaPredicted RBP17.64■□□□□ 0.41
CD4-208ENST00000538827 FLAD1Q8NFF5 587 aa17.64■□□□□ 0.41
CD4-208ENST00000538827 FAM89AQ96GI7 184 aa17.64■□□□□ 0.41
CD4-208ENST00000538827 UTP14AQ9BVJ6 771 aaKnown RBP17.64■□□□□ 0.41
CD4-208ENST00000538827 BICC1Q9H694 974 aaKnown RBP17.64■□□□□ 0.41
CD4-208ENST00000538827 CD2APQ9Y5K6 639 aa17.64■□□□□ 0.41
CD4-208ENST00000538827 CASP7P55210 303 aa17.63■□□□□ 0.41
CD4-208ENST00000538827 HDAC1Q13547 482 aaPredicted RBP17.63■□□□□ 0.41
CD4-208ENST00000538827 PPP1R42Q7Z4L9 355 aa17.63■□□□□ 0.41
CD4-208ENST00000538827 ZBTB38Q8NAP3 1195 aaPredicted RBP17.63■□□□□ 0.41
CD4-208ENST00000538827 CHMP3Q9Y3E7 222 aa17.63■□□□□ 0.41
CD4-208ENST00000538827 KDM2BQ8NHM5 1336 aa17.63■□□□□ 0.41
CD4-208ENST00000538827 KIF3CO14782 793 aa17.62■□□□□ 0.41
CD4-208ENST00000538827 NPHP1O15259 732 aa17.62■□□□□ 0.41
CD4-208ENST00000538827 GYS1P13807 737 aa17.62■□□□□ 0.41
CD4-208ENST00000538827 SIRT2Q8IXJ6 389 aa17.62■□□□□ 0.41
CD4-208ENST00000538827 SETDB2Q96T68 719 aa17.62■□□□□ 0.41
CD4-208ENST00000538827 CDHR2Q9BYE9 1310 aa17.62■□□□□ 0.41
CD4-208ENST00000538827 PNMA6EA0A0J9YXQ4 647 aa17.61■□□□□ 0.41
CD4-208ENST00000538827 SRGAP3O43295 1099 aa17.61■□□□□ 0.41
CD4-208ENST00000538827 NTSR2O95665 410 aa17.61■□□□□ 0.41
CD4-208ENST00000538827 ATP8B2P98198 1209 aa17.61■□□□□ 0.41
CD4-208ENST00000538827 EPHA10Q5JZY3 1008 aa17.61■□□□□ 0.41
CD4-208ENST00000538827 SH3TC1Q8TE82 1336 aa17.61■□□□□ 0.41
CD4-208ENST00000538827 CARMIL3Q8ND23 1372 aa17.61■□□□□ 0.41
CD4-208ENST00000538827 IRS4O14654 1257 aaPredicted RBP17.6■□□□□ 0.41
CD4-208ENST00000538827 GTF2E1P29083 439 aaPredicted RBP17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms