RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 C11orf95C9JLR9 678 aaPredicted RBP11.41□□□□□ -0.58
COL4A6-208ENST00000538570 STX6O43752 255 aa11.41□□□□□ -0.58
COL4A6-208ENST00000538570 IFI16Q16666 785 aaKnown RBP11.41□□□□□ -0.58
COL4A6-208ENST00000538570 STXBP4Q6ZWJ1 553 aa11.41□□□□□ -0.58
COL4A6-208ENST00000538570 KCNH5Q8NCM2 988 aa11.41□□□□□ -0.58
COL4A6-208ENST00000538570 FEZ1Q99689 392 aa11.41□□□□□ -0.58
COL4A6-208ENST00000538570 JADE2Q9NQC1 790 aa11.41□□□□□ -0.58
COL4A6-208ENST00000538570 CERS3Q8IU89 383 aa11.41□□□□□ -0.58
COL4A6-208ENST00000538570 EVI5LQ96CN4 794 aa11.41□□□□□ -0.58
COL4A6-208ENST00000538570 SRRTQ9BXP5 876 aaKnown RBP11.41□□□□□ -0.58
COL4A6-208ENST00000538570 COMMD10Q9Y6G5 202 aa11.41□□□□□ -0.58
COL4A6-208ENST00000538570 FERP16591 822 aa11.41□□□□□ -0.58
COL4A6-208ENST00000538570 TCERG1LQ5VWI1 586 aa11.41□□□□□ -0.58
COL4A6-208ENST00000538570 SSH1Q8WYL5 1049 aa11.41□□□□□ -0.58
COL4A6-208ENST00000538570 IGSF3O75054 1194 aa11.4□□□□□ -0.58
COL4A6-208ENST00000538570 RAPGEF3O95398 923 aa11.4□□□□□ -0.58
COL4A6-208ENST00000538570 CCDC184Q52MB2 194 aa11.4□□□□□ -0.58
COL4A6-208ENST00000538570 A0A1B0GUL7 405 aa11.4□□□□□ -0.58
COL4A6-208ENST00000538570 CAVIN2O95810 425 aa11.4□□□□□ -0.58
COL4A6-208ENST00000538570 TAF7Q15545 349 aaPredicted RBP11.4□□□□□ -0.58
COL4A6-208ENST00000538570 TSNARE1Q96NA8 513 aa11.4□□□□□ -0.58
COL4A6-208ENST00000538570 ANKIB1Q9P2G1 1089 aa11.4□□□□□ -0.58
COL4A6-208ENST00000538570 SLF2Q8IX21 1173 aa11.4□□□□□ -0.58
COL4A6-208ENST00000538570 RNF168Q8IYW5 571 aaPredicted RBP11.4□□□□□ -0.58
COL4A6-208ENST00000538570 PRC1O43663 620 aa11.4□□□□□ -0.58
COL4A6-208ENST00000538570 HSPA4P34932 840 aa11.4□□□□□ -0.58
COL4A6-208ENST00000538570 CHMP4BP1P59074 171 aa11.4□□□□□ -0.58
COL4A6-208ENST00000538570 DDX12PQ92771 950 aa11.4□□□□□ -0.58
COL4A6-208ENST00000538570 THUMPD2Q9BTF0 503 aaKnown RBP11.4□□□□□ -0.58
COL4A6-208ENST00000538570 EPRSP07814 1512 aaKnown RBP11.4□□□□□ -0.59
COL4A6-208ENST00000538570 SPTY2D1Q68D10 685 aaPredicted RBP11.4□□□□□ -0.59
COL4A6-208ENST00000538570 TFIP11Q9UBB9 837 aaKnown RBP11.4□□□□□ -0.59
COL4A6-208ENST00000538570 CCDC171Q6TFL3 1326 aa11.39□□□□□ -0.59
COL4A6-208ENST00000538570 TTC21AQ8NDW8 1320 aa11.39□□□□□ -0.59
COL4A6-208ENST00000538570 ZNF165P49910 485 aa11.39□□□□□ -0.59
COL4A6-208ENST00000538570 UBE2HP62256 183 aa11.39□□□□□ -0.59
COL4A6-208ENST00000538570 CKAP4Q07065 602 aaKnown RBP11.39□□□□□ -0.59
COL4A6-208ENST00000538570 GRIPAP1Q4V328 841 aa11.39□□□□□ -0.59
COL4A6-208ENST00000538570 DAAM2Q86T65 1068 aa11.39□□□□□ -0.59
COL4A6-208ENST00000538570 TMOD3Q9NYL9 352 aa11.39□□□□□ -0.59
COL4A6-208ENST00000538570 FERMT1Q9BQL6 677 aa11.39□□□□□ -0.59
COL4A6-208ENST00000538570 ZPR1O75312 459 aa11.39□□□□□ -0.59
COL4A6-208ENST00000538570 GNG11P61952 73 aa11.39□□□□□ -0.59
COL4A6-208ENST00000538570 NAA25Q14CX7 972 aa11.39□□□□□ -0.59
COL4A6-208ENST00000538570 LRRC27Q9C0I9 530 aa11.39□□□□□ -0.59
COL4A6-208ENST00000538570 GDPD2Q9HCC8 539 aa11.39□□□□□ -0.59
COL4A6-208ENST00000538570 XRCC6P12956 609 aaKnown RBP eCLIP11.39□□□□□ -0.59
COL4A6-208ENST00000538570 KIF5BP33176 963 aa11.39□□□□□ -0.59
COL4A6-208ENST00000538570 IARSP41252 1262 aaKnown RBP11.39□□□□□ -0.59
COL4A6-208ENST00000538570 CCDC155Q8N6L0 562 aa11.39□□□□□ -0.59
COL4A6-208ENST00000538570 USP16Q9Y5T5 823 aa11.39□□□□□ -0.59
COL4A6-208ENST00000538570 IDEP14735 1019 aa11.38□□□□□ -0.59
COL4A6-208ENST00000538570 CCDC102BQ68D86 513 aa11.38□□□□□ -0.59
COL4A6-208ENST00000538570 SEPT14Q6ZU15 432 aa11.38□□□□□ -0.59
COL4A6-208ENST00000538570 NUDT16Q96DE0 195 aaKnown RBP11.38□□□□□ -0.59
COL4A6-208ENST00000538570 IKBKGQ9Y6K9 419 aa11.38□□□□□ -0.59
COL4A6-208ENST00000538570 PPM1FP49593 454 aaPredicted RBP11.38□□□□□ -0.59
COL4A6-208ENST00000538570 NOLC1Q14978 699 aaKnown RBP eCLIP11.38□□□□□ -0.59
COL4A6-208ENST00000538570 TMEM67Q5HYA8 995 aa11.38□□□□□ -0.59
COL4A6-208ENST00000538570 ATP2C2O75185 946 aa11.38□□□□□ -0.59
COL4A6-208ENST00000538570 TTF1Q15361 905 aaPredicted RBP11.38□□□□□ -0.59
COL4A6-208ENST00000538570 KIAA0753Q2KHM9 967 aa11.38□□□□□ -0.59
COL4A6-208ENST00000538570 SYCP3Q8IZU3 236 aa11.38□□□□□ -0.59
COL4A6-208ENST00000538570 PPP1R14CQ8TAE6 165 aa11.38□□□□□ -0.59
COL4A6-208ENST00000538570 LARP6Q9BRS8 491 aaKnown RBP11.38□□□□□ -0.59
COL4A6-208ENST00000538570 PTPRCP08575 1304 aa11.38□□□□□ -0.59
COL4A6-208ENST00000538570 PTCD1O75127 700 aaKnown RBP11.37□□□□□ -0.59
COL4A6-208ENST00000538570 CCDC172P0C7W6 258 aa11.37□□□□□ -0.59
COL4A6-208ENST00000538570 AMOTQ4VCS5 1084 aa11.37□□□□□ -0.59
COL4A6-208ENST00000538570 RMND1Q9NWS8 449 aa11.37□□□□□ -0.59
COL4A6-208ENST00000538570 HYPKQ9NX55 129 aa11.37□□□□□ -0.59
COL4A6-208ENST00000538570 A0A1W2PRG0 241 aa11.37□□□□□ -0.59
COL4A6-208ENST00000538570 MYO1BO43795 1136 aa11.37□□□□□ -0.59
COL4A6-208ENST00000538570 ACTN2P35609 894 aa11.37□□□□□ -0.59
COL4A6-208ENST00000538570 UBA7P41226 1012 aa11.37□□□□□ -0.59
COL4A6-208ENST00000538570 ZC3H6P61129 1189 aaKnown RBP11.37□□□□□ -0.59
COL4A6-208ENST00000538570 ANKLE2Q86XL3 938 aa11.37□□□□□ -0.59
COL4A6-208ENST00000538570 CEP57Q86XR8 500 aa11.37□□□□□ -0.59
COL4A6-208ENST00000538570 FBF1Q8TES7 1133 aa11.37□□□□□ -0.59
COL4A6-208ENST00000538570 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.37□□□□□ -0.59
COL4A6-208ENST00000538570 NSRP1Q9H0G5 558 aaKnown RBP11.37□□□□□ -0.59
COL4A6-208ENST00000538570 SUPT6HQ7KZ85 1726 aaKnown RBP11.37□□□□□ -0.59
COL4A6-208ENST00000538570 RBM27Q9P2N5 1060 aaKnown RBP11.37□□□□□ -0.59
COL4A6-208ENST00000538570 DHX29Q7Z478 1369 aaKnown RBP11.37□□□□□ -0.59
COL4A6-208ENST00000538570 METAP2P50579 478 aaKnown RBP eCLIP11.37□□□□□ -0.59
COL4A6-208ENST00000538570 ISM2Q6H9L7 571 aa11.37□□□□□ -0.59
COL4A6-208ENST00000538570 ORC3Q9UBD5 711 aaPredicted RBP11.37□□□□□ -0.59
COL4A6-208ENST00000538570 LAMC3Q9Y6N6 1575 aa11.37□□□□□ -0.59
COL4A6-208ENST00000538570 F6X3S4 739 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 C20orf194Q5TEA3 1177 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 CCDC144CPQ8IYA2 1237 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 PANK2Q9BZ23 570 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 ZSCAN16Q9H4T2 348 aaPredicted RBP11.36□□□□□ -0.59
COL4A6-208ENST00000538570 ZSWIM4Q9H7M6 989 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 EXOC1Q9NV70 894 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 HMG20BQ9P0W2 317 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 PABPN1LA6NDY0 278 aaKnown RBP11.36□□□□□ -0.59
COL4A6-208ENST00000538570 N4BP3O15049 544 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 ZSCAN23Q3MJ62 389 aa11.36□□□□□ -0.59
COL4A6-208ENST00000538570 AP1ARQ63HQ0 302 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms