RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 TM6SF1Q9BZW5 370 aa8□□□□□ -1.13
USP28-206ENST00000538224 LSG1Q9H089 658 aaKnown RBP8□□□□□ -1.13
USP28-206ENST00000538224 GPR108Q9NPR9 543 aa8□□□□□ -1.13
USP28-206ENST00000538224 SNRKQ9NRH2 765 aa8□□□□□ -1.13
USP28-206ENST00000538224 ATG3Q9NT62 314 aa8□□□□□ -1.13
USP28-206ENST00000538224 TMOD3Q9NYL9 352 aa8□□□□□ -1.13
USP28-206ENST00000538224 PA2G4Q9UQ80 394 aaKnown RBP8□□□□□ -1.13
USP28-206ENST00000538224 USP16Q9Y5T5 823 aa8□□□□□ -1.13
USP28-206ENST00000538224 LAMB2P55268 1798 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 JCADQ9P266 1359 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 ZNF831Q5JPB2 1677 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 RREB1Q92766 1687 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 A0A087WZG4 1122 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 KDM4FA0A1W2PPD8 638 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 SASH1O94885 1247 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 BAG4O95429 457 aaKnown RBP7.99□□□□□ -1.13
USP28-206ENST00000538224 ATP5JP18859 108 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 SSFA2P28290 1259 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 MRE11P49959 708 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 KLHL40Q2TBA0 621 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 CWC27Q6UX04 472 aaKnown RBP7.99□□□□□ -1.13
USP28-206ENST00000538224 KIF6Q6ZMV9 814 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 UBE3BQ7Z3V4 1068 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 FOXD4L1Q9NU39 408 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 HMG20BQ9P0W2 317 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 FBXO3Q9UK99 471 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 PALD1Q9ULE6 856 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 CCDC171Q6TFL3 1326 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 NUP98P52948 1817 aa7.99□□□□□ -1.13
USP28-206ENST00000538224 MED23Q9ULK4 1368 aa7.98□□□□□ -1.13
USP28-206ENST00000538224 ARAP2Q8WZ64 1704 aa7.98□□□□□ -1.13
USP28-206ENST00000538224 ZNF609O15014 1411 aa7.98□□□□□ -1.13
USP28-206ENST00000538224 FSD2A1L4K1 749 aa7.98□□□□□ -1.13
USP28-206ENST00000538224 H7C1W4 665 aa7.98□□□□□ -1.13
USP28-206ENST00000538224 STARD3NLO95772 234 aa7.98□□□□□ -1.13
USP28-206ENST00000538224 MAP4K4O95819 1239 aaPredicted RBP7.98□□□□□ -1.13
USP28-206ENST00000538224 PSMA5P28066 241 aa7.98□□□□□ -1.13
USP28-206ENST00000538224 RFX5P48382 616 aaPredicted RBP7.98□□□□□ -1.13
USP28-206ENST00000538224 CASP7P55210 303 aa7.98□□□□□ -1.13
USP28-206ENST00000538224 PTPN12Q05209 780 aaKnown RBP7.98□□□□□ -1.13
USP28-206ENST00000538224 LRRFIP1Q32MZ4 808 aaKnown RBP7.98□□□□□ -1.13
USP28-206ENST00000538224 HSP90AB3PQ58FF7 597 aa7.98□□□□□ -1.13
USP28-206ENST00000538224 TNNI3KQ59H18 835 aa7.98□□□□□ -1.13
USP28-206ENST00000538224 KCNB2Q92953 911 aa7.98□□□□□ -1.13
USP28-206ENST00000538224 EAF2Q96CJ1 260 aaPredicted RBP7.98□□□□□ -1.13
USP28-206ENST00000538224 ZSCAN31Q96LW9 406 aaPredicted RBP7.98□□□□□ -1.13
USP28-206ENST00000538224 FSD1Q9BTV5 496 aa7.98□□□□□ -1.13
USP28-206ENST00000538224 CDCA7Q9BWT1 371 aaPredicted RBP7.98□□□□□ -1.13
USP28-206ENST00000538224 STRN4Q9NRL3 753 aa7.98□□□□□ -1.13
USP28-206ENST00000538224 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.98□□□□□ -1.13
USP28-206ENST00000538224 SNX14Q9Y5W7 946 aa7.98□□□□□ -1.13
USP28-206ENST00000538224 FPGT-TNNI3KV9GXZ4 949 aa7.98□□□□□ -1.13
USP28-206ENST00000538224 WDR33Q9C0J8 1336 aaKnown RBP7.98□□□□□ -1.13
USP28-206ENST00000538224 PALLDQ8WX93 1383 aa7.97□□□□□ -1.13
USP28-206ENST00000538224 ABCC12Q96J65 1359 aa7.97□□□□□ -1.13
USP28-206ENST00000538224 NBPF26B4DH59 902 aa7.97□□□□□ -1.13
USP28-206ENST00000538224 CIAO1O76071 339 aa7.97□□□□□ -1.13
USP28-206ENST00000538224 MBD3O95983 291 aa7.97□□□□□ -1.13
USP28-206ENST00000538224 IL15P40933 162 aaPredicted RBP7.97□□□□□ -1.13
USP28-206ENST00000538224 KCNJ4P48050 445 aa7.97□□□□□ -1.13
USP28-206ENST00000538224 TRIM28Q13263 835 aaKnown RBP7.97□□□□□ -1.13
USP28-206ENST00000538224 KRT32Q14532 448 aa7.97□□□□□ -1.13
USP28-206ENST00000538224 ANKRD1Q15327 319 aa7.97□□□□□ -1.13
USP28-206ENST00000538224 NBPF14Q5TI25 921 aa7.97□□□□□ -1.13
USP28-206ENST00000538224 VPS53Q5VIR6 699 aa7.97□□□□□ -1.13
USP28-206ENST00000538224 NBPF10Q6P3W6 841 aaKnown RBP7.97□□□□□ -1.13
USP28-206ENST00000538224 NBPF15Q8N660 670 aa7.97□□□□□ -1.13
USP28-206ENST00000538224 DDX54Q8TDD1 881 aaKnown RBP7.97□□□□□ -1.13
USP28-206ENST00000538224 SIL1Q9H173 461 aa7.97□□□□□ -1.13
USP28-206ENST00000538224 SH2B1Q9NRF2 756 aaPredicted RBP7.97□□□□□ -1.13
USP28-206ENST00000538224 LIMCH1Q9UPQ0 1083 aa7.97□□□□□ -1.13
USP28-206ENST00000538224 CYP46A1Q9Y6A2 500 aa7.97□□□□□ -1.13
USP28-206ENST00000538224 DDX49Q9Y6V7 483 aaKnown RBP7.97□□□□□ -1.13
USP28-206ENST00000538224 RPAP1Q9BWH6 1393 aaPredicted RBP7.97□□□□□ -1.13
USP28-206ENST00000538224 BCL9O00512 1426 aa7.96□□□□□ -1.13
USP28-206ENST00000538224 BRD1O95696 1058 aa7.96□□□□□ -1.14
USP28-206ENST00000538224 EPHA10Q5JZY3 1008 aa7.96□□□□□ -1.14
USP28-206ENST00000538224 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.96□□□□□ -1.14
USP28-206ENST00000538224 TTC14Q96N46 770 aa7.96□□□□□ -1.14
USP28-206ENST00000538224 ISCA1Q9BUE6 129 aa7.96□□□□□ -1.14
USP28-206ENST00000538224 CCDC8Q9H0W5 538 aaPredicted RBP7.96□□□□□ -1.14
USP28-206ENST00000538224 ATP6V1DQ9Y5K8 247 aa7.96□□□□□ -1.14
USP28-206ENST00000538224 LAMA4Q16363 1823 aa7.96□□□□□ -1.14
USP28-206ENST00000538224 LRP5O75197 1615 aa7.96□□□□□ -1.14
USP28-206ENST00000538224 BCORQ6W2J9 1755 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 ATP5J2-PTCD1G3V325 749 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 PTCD1O75127 700 aaKnown RBP7.95□□□□□ -1.14
USP28-206ENST00000538224 PCCAP05165 728 aaPredicted RBP7.95□□□□□ -1.14
USP28-206ENST00000538224 CASTP20810 708 aaKnown RBP7.95□□□□□ -1.14
USP28-206ENST00000538224 FOXO4P98177 505 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 TFCP2Q12800 502 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 NMIQ13287 307 aaPredicted RBP7.95□□□□□ -1.14
USP28-206ENST00000538224 NECTIN1Q15223 517 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 CSPP1Q1MSJ5 1256 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 MCTP1Q6DN14 999 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 LMBR1LQ6UX01 489 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 KLHL34Q8N239 644 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 ZGPATQ8N5A5 531 aaKnown RBP7.95□□□□□ -1.14
USP28-206ENST00000538224 MAP4K1Q92918 833 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 SYAP1Q96A49 352 aaPredicted RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms