RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 LTBP4Q8N2S1 1624 aa13.16□□□□□ -0.3
CLIP1-210ENST00000538120 NUTM1Q86Y26 1132 aa13.15□□□□□ -0.3
CLIP1-210ENST00000538120 KIF1BPQ96EK5 621 aa13.15□□□□□ -0.3
CLIP1-210ENST00000538120 MYD88Q99836 296 aa13.15□□□□□ -0.3
CLIP1-210ENST00000538120 PCDHB8Q9UN66 801 aa13.15□□□□□ -0.3
CLIP1-210ENST00000538120 PAPPAQ13219 1627 aa13.15□□□□□ -0.3
CLIP1-210ENST00000538120 TUBGCP6Q96RT7 1819 aa13.15□□□□□ -0.3
CLIP1-210ENST00000538120 GCKRQ14397 625 aa13.15□□□□□ -0.3
CLIP1-210ENST00000538120 IFNL1Q8IU54 200 aa13.15□□□□□ -0.3
CLIP1-210ENST00000538120 AOX1Q06278 1338 aa13.15□□□□□ -0.3
CLIP1-210ENST00000538120 TNS2Q63HR2 1409 aa13.15□□□□□ -0.31
CLIP1-210ENST00000538120 UBR2Q8IWV8 1755 aa13.14□□□□□ -0.31
CLIP1-210ENST00000538120 FSD2A1L4K1 749 aa13.14□□□□□ -0.31
CLIP1-210ENST00000538120 GOLGA6L3A6NEY3 463 aa13.14□□□□□ -0.31
CLIP1-210ENST00000538120 BICC1Q9H694 974 aaKnown RBP13.14□□□□□ -0.31
CLIP1-210ENST00000538120 LAMB4A4D0S4 1761 aa13.14□□□□□ -0.31
CLIP1-210ENST00000538120 DISP2A7MBM2 1401 aa13.14□□□□□ -0.31
CLIP1-210ENST00000538120 UNC5CLQ8IV45 518 aa13.14□□□□□ -0.31
CLIP1-210ENST00000538120 PA2G4Q9UQ80 394 aaKnown RBP13.14□□□□□ -0.31
CLIP1-210ENST00000538120 HDAC5Q9UQL6 1122 aa13.14□□□□□ -0.31
CLIP1-210ENST00000538120 TOGARAM1Q9Y4F4 1720 aa13.13□□□□□ -0.31
CLIP1-210ENST00000538120 ERBB4Q15303 1308 aa13.13□□□□□ -0.31
CLIP1-210ENST00000538120 NEXNQ0ZGT2 675 aa13.13□□□□□ -0.31
CLIP1-210ENST00000538120 HSP90AB4PQ58FF6 505 aa13.13□□□□□ -0.31
CLIP1-210ENST00000538120 PI4K2BQ8TCG2 481 aa13.13□□□□□ -0.31
CLIP1-210ENST00000538120 COL16A1Q07092 1604 aaPredicted RBP13.13□□□□□ -0.31
CLIP1-210ENST00000538120 COL22A1Q8NFW1 1626 aaPredicted RBP13.13□□□□□ -0.31
CLIP1-210ENST00000538120 TRAK2O60296 914 aa13.13□□□□□ -0.31
CLIP1-210ENST00000538120 CD2BP2O95400 341 aaKnown RBP13.13□□□□□ -0.31
CLIP1-210ENST00000538120 EPHA10Q5JZY3 1008 aa13.13□□□□□ -0.31
CLIP1-210ENST00000538120 CASC1Q6TDU7 716 aa13.13□□□□□ -0.31
CLIP1-210ENST00000538120 CHMP5Q9NZZ3 219 aa13.13□□□□□ -0.31
CLIP1-210ENST00000538120 COL14A1Q05707 1796 aaKnown RBP13.13□□□□□ -0.31
CLIP1-210ENST00000538120 HMGB1P09429 215 aaKnown RBP13.12□□□□□ -0.31
CLIP1-210ENST00000538120 MS4A3Q96HJ5 214 aa13.12□□□□□ -0.31
CLIP1-210ENST00000538120 USP42Q9H9J4 1324 aaKnown RBP13.12□□□□□ -0.31
CLIP1-210ENST00000538120 PTCD1O75127 700 aaKnown RBP13.12□□□□□ -0.31
CLIP1-210ENST00000538120 A1BGP04217 495 aa13.12□□□□□ -0.31
CLIP1-210ENST00000538120 HSCBQ8IWL3 235 aa13.12□□□□□ -0.31
CLIP1-210ENST00000538120 PLBD2Q8NHP8 589 aa13.12□□□□□ -0.31
CLIP1-210ENST00000538120 SGIP1Q9BQI5 828 aa13.12□□□□□ -0.31
CLIP1-210ENST00000538120 ERC2O15083 957 aa13.11□□□□□ -0.31
CLIP1-210ENST00000538120 CHMLP26374 656 aa13.11□□□□□ -0.31
CLIP1-210ENST00000538120 TTLL7Q6ZT98 887 aa13.11□□□□□ -0.31
CLIP1-210ENST00000538120 ZNF467Q7Z7K2 595 aaPredicted RBP13.11□□□□□ -0.31
CLIP1-210ENST00000538120 PIGBQ92521 554 aa13.11□□□□□ -0.31
CLIP1-210ENST00000538120 JARID2Q92833 1246 aaPredicted RBP13.11□□□□□ -0.31
CLIP1-210ENST00000538120 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.11□□□□□ -0.31
CLIP1-210ENST00000538120 ATP5J2-PTCD1G3V325 749 aa13.1□□□□□ -0.31
CLIP1-210ENST00000538120 CASP7P55210 303 aa13.1□□□□□ -0.31
CLIP1-210ENST00000538120 RILPL2Q969X0 211 aa13.1□□□□□ -0.31
CLIP1-210ENST00000538120 ESYT1Q9BSJ8 1104 aa13.1□□□□□ -0.31
CLIP1-210ENST00000538120 TRIM6-TRIM34B2RNG4 842 aa13.1□□□□□ -0.31
CLIP1-210ENST00000538120 SASH1O94885 1247 aa13.1□□□□□ -0.31
CLIP1-210ENST00000538120 TMOD3Q9NYL9 352 aa13.1□□□□□ -0.31
CLIP1-210ENST00000538120 ARFGEF2Q9Y6D5 1785 aa13.09□□□□□ -0.31
CLIP1-210ENST00000538120 DDIT3P35638 169 aa13.09□□□□□ -0.31
CLIP1-210ENST00000538120 OS9Q13438 667 aaPredicted RBP13.09□□□□□ -0.31
CLIP1-210ENST00000538120 ASAP1Q9ULH1 1129 aa13.09□□□□□ -0.31
CLIP1-210ENST00000538120 COL15A1P39059 1388 aa13.09□□□□□ -0.31
CLIP1-210ENST00000538120 REC8O95072 547 aa13.08□□□□□ -0.31
CLIP1-210ENST00000538120 ERC1Q8IUD2 1116 aa13.08□□□□□ -0.31
CLIP1-210ENST00000538120 ATG3Q9NT62 314 aa13.08□□□□□ -0.31
CLIP1-210ENST00000538120 GALR2O43603 387 aaPredicted RBP13.08□□□□□ -0.32
CLIP1-210ENST00000538120 MAP4K4O95819 1239 aaPredicted RBP13.08□□□□□ -0.32
CLIP1-210ENST00000538120 RFX5P48382 616 aaPredicted RBP13.08□□□□□ -0.32
CLIP1-210ENST00000538120 RABL6Q3YEC7 729 aaPredicted RBP13.07□□□□□ -0.32
CLIP1-210ENST00000538120 PAXIP1Q6ZW49 1069 aaPredicted RBP13.07□□□□□ -0.32
CLIP1-210ENST00000538120 CLASRPQ8N2M8 674 aaKnown RBP13.07□□□□□ -0.32
CLIP1-210ENST00000538120 KLHDC4Q8TBB5 520 aa13.07□□□□□ -0.32
CLIP1-210ENST00000538120 IL25Q9H293 177 aa13.07□□□□□ -0.32
CLIP1-210ENST00000538120 TTC41PQ6P2S7 1318 aa13.07□□□□□ -0.32
CLIP1-210ENST00000538120 RABEP1Q15276 862 aa13.07□□□□□ -0.32
CLIP1-210ENST00000538120 UBE3BQ7Z3V4 1068 aa13.07□□□□□ -0.32
CLIP1-210ENST00000538120 TRPC6Q9Y210 931 aa13.07□□□□□ -0.32
CLIP1-210ENST00000538120 A0A087WZG4 1122 aa13.06□□□□□ -0.32
CLIP1-210ENST00000538120 H7C1W4 665 aa13.06□□□□□ -0.32
CLIP1-210ENST00000538120 G3BP1Q13283 466 aaKnown RBP eCLIP13.06□□□□□ -0.32
CLIP1-210ENST00000538120 K7ELQ4 463 aaPredicted RBP13.06□□□□□ -0.32
CLIP1-210ENST00000538120 EAF2Q96CJ1 260 aaPredicted RBP13.06□□□□□ -0.32
CLIP1-210ENST00000538120 NUP188Q5SRE5 1749 aa13.06□□□□□ -0.32
CLIP1-210ENST00000538120 PLCH1Q4KWH8 1693 aa13.05□□□□□ -0.32
CLIP1-210ENST00000538120 DNAJC10Q8IXB1 793 aa13.05□□□□□ -0.32
CLIP1-210ENST00000538120 ARID3AQ99856 593 aa13.05□□□□□ -0.32
CLIP1-210ENST00000538120 COPRSQ9NQ92 184 aa13.05□□□□□ -0.32
CLIP1-210ENST00000538120 GLRX3O76003 335 aaKnown RBP13.05□□□□□ -0.32
CLIP1-210ENST00000538120 FOXO4P98177 505 aa13.05□□□□□ -0.32
CLIP1-210ENST00000538120 PTPN12Q05209 780 aaKnown RBP13.05□□□□□ -0.32
CLIP1-210ENST00000538120 AACSQ86V21 672 aa13.05□□□□□ -0.32
CLIP1-210ENST00000538120 TNPO1Q92973 898 aaKnown RBP13.05□□□□□ -0.32
CLIP1-210ENST00000538120 SIL1Q9H173 461 aa13.05□□□□□ -0.32
CLIP1-210ENST00000538120 ZBTB3Q9H5J0 574 aa13.05□□□□□ -0.32
CLIP1-210ENST00000538120 ECHDC1Q9NTX5 307 aa13.05□□□□□ -0.32
CLIP1-210ENST00000538120 BCL9O00512 1426 aa13.04□□□□□ -0.32
CLIP1-210ENST00000538120 EXOC5O00471 708 aa13.04□□□□□ -0.32
CLIP1-210ENST00000538120 ADAMTS2O95450 1211 aa13.04□□□□□ -0.32
CLIP1-210ENST00000538120 SLC4A9Q96Q91 983 aa13.04□□□□□ -0.32
CLIP1-210ENST00000538120 GRPEL1Q9HAV7 217 aa13.04□□□□□ -0.32
CLIP1-210ENST00000538120 AFDNP55196 1824 aaKnown RBP13.04□□□□□ -0.32
CLIP1-210ENST00000538120 IFIT2P09913 472 aaKnown RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms