RNA–Protein interactions for RNA: ENST00000537529.6

MKS1-204, Transcript of Meckel syndrome, type 1, humanhuman

TSL 1 (best) BASIC

Gene MKS1, Length 2,083 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-204ENST00000537529 PTPN12Q05209 780 aaKnown RBP18.94■□□□□ 0.62
MKS1-204ENST00000537529 CUL4AQ13619 759 aa18.94■□□□□ 0.62
MKS1-204ENST00000537529 BTG4Q9NY30 223 aa18.94■□□□□ 0.62
MKS1-204ENST00000537529 COL14A1Q05707 1796 aaKnown RBP18.93■□□□□ 0.62
MKS1-204ENST00000537529 BAG4O95429 457 aaKnown RBP18.93■□□□□ 0.62
MKS1-204ENST00000537529 GZF1Q9H116 711 aaPredicted RBP18.93■□□□□ 0.62
MKS1-204ENST00000537529 SNX14Q9Y5W7 946 aa18.93■□□□□ 0.62
MKS1-204ENST00000537529 INTS4Q96HW7 963 aaKnown RBP18.93■□□□□ 0.62
MKS1-204ENST00000537529 UPF3BQ9BZI7 483 aaKnown RBP18.93■□□□□ 0.62
MKS1-204ENST00000537529 CCDC191Q8NCU4 936 aa18.91■□□□□ 0.62
MKS1-204ENST00000537529 TEX13AQ9BXU3 409 aaPredicted RBP18.91■□□□□ 0.62
MKS1-204ENST00000537529 DISP2A7MBM2 1401 aa18.91■□□□□ 0.62
MKS1-204ENST00000537529 TFCP2Q12800 502 aa18.91■□□□□ 0.62
MKS1-204ENST00000537529 TNNI3KQ59H18 835 aa18.91■□□□□ 0.62
MKS1-204ENST00000537529 LMBR1LQ6UX01 489 aa18.91■□□□□ 0.62
MKS1-204ENST00000537529 FPGT-TNNI3KV9GXZ4 949 aa18.91■□□□□ 0.62
MKS1-204ENST00000537529 TJP1Q07157 1748 aa18.9■□□□□ 0.62
MKS1-204ENST00000537529 GOLGA6L3A6NEY3 463 aa18.9■□□□□ 0.62
MKS1-204ENST00000537529 FOXO4P98177 505 aa18.9■□□□□ 0.62
MKS1-204ENST00000537529 VSIG10Q8N0Z9 540 aa18.9■□□□□ 0.62
MKS1-204ENST00000537529 FSD1Q9BTV5 496 aa18.9■□□□□ 0.62
MKS1-204ENST00000537529 BOLA2Q9H3K6 86 aa18.9■□□□□ 0.62
MKS1-204ENST00000537529 ZBTB3Q9H5J0 574 aa18.9■□□□□ 0.62
MKS1-204ENST00000537529 NOL8Q76FK4 1167 aaKnown RBP18.89■□□□□ 0.62
MKS1-204ENST00000537529 AHDC1Q5TGY3 1603 aaPredicted RBP18.89■□□□□ 0.62
MKS1-204ENST00000537529 CCDC171Q6TFL3 1326 aa18.89■□□□□ 0.61
MKS1-204ENST00000537529 ATP5JP18859 108 aa18.89■□□□□ 0.61
MKS1-204ENST00000537529 NMIQ13287 307 aaPredicted RBP18.89■□□□□ 0.61
MKS1-204ENST00000537529 CHMP3Q9Y3E7 222 aa18.89■□□□□ 0.61
MKS1-204ENST00000537529 COL22A1Q8NFW1 1626 aaPredicted RBP18.88■□□□□ 0.61
MKS1-204ENST00000537529 SNRKQ9NRH2 765 aa18.88■□□□□ 0.61
MKS1-204ENST00000537529 DBNLQ9UJU6 430 aaKnown RBP18.88■□□□□ 0.61
MKS1-204ENST00000537529 PLCH1Q4KWH8 1693 aa18.88■□□□□ 0.61
MKS1-204ENST00000537529 ROBO1Q9Y6N7 1651 aa18.88■□□□□ 0.61
MKS1-204ENST00000537529 FSD2A1L4K1 749 aa18.88■□□□□ 0.61
MKS1-204ENST00000537529 PTH1RQ03431 593 aa18.88■□□□□ 0.61
MKS1-204ENST00000537529 PKP1Q13835 747 aa18.88■□□□□ 0.61
MKS1-204ENST00000537529 RASEFQ8IZ41 740 aa18.88■□□□□ 0.61
MKS1-204ENST00000537529 PIGBQ92521 554 aa18.88■□□□□ 0.61
MKS1-204ENST00000537529 KCNB2Q92953 911 aa18.87■□□□□ 0.61
MKS1-204ENST00000537529 TTC14Q96N46 770 aa18.87■□□□□ 0.61
MKS1-204ENST00000537529 ISY1Q9ULR0 285 aaKnown RBP18.87■□□□□ 0.61
MKS1-204ENST00000537529 LRP6O75581 1613 aa18.87■□□□□ 0.61
MKS1-204ENST00000537529 RFX7Q2KHR2 1363 aa18.87■□□□□ 0.61
MKS1-204ENST00000537529 FAM227BQ96M60 508 aa18.86■□□□□ 0.61
MKS1-204ENST00000537529 STARD3NLO95772 234 aa18.86■□□□□ 0.61
MKS1-204ENST00000537529 MCTP1Q6DN14 999 aa18.86■□□□□ 0.61
MKS1-204ENST00000537529 KIF6Q6ZMV9 814 aa18.86■□□□□ 0.61
MKS1-204ENST00000537529 ISCA1Q9BUE6 129 aa18.86■□□□□ 0.61
MKS1-204ENST00000537529 BRPF3Q9ULD4 1205 aa18.86■□□□□ 0.61
MKS1-204ENST00000537529 ASAP1Q9ULH1 1129 aa18.86■□□□□ 0.61
MKS1-204ENST00000537529 ZDHHC9Q9Y397 364 aa18.86■□□□□ 0.61
MKS1-204ENST00000537529 PRPF40BQ6NWY9 871 aaKnown RBP18.85■□□□□ 0.61
MKS1-204ENST00000537529 DNAJC10Q8IXB1 793 aa18.85■□□□□ 0.61
MKS1-204ENST00000537529 TM6SF1Q9BZW5 370 aa18.85■□□□□ 0.61
MKS1-204ENST00000537529 ATG3Q9NT62 314 aa18.85■□□□□ 0.61
MKS1-204ENST00000537529 COL16A1Q07092 1604 aaPredicted RBP18.85■□□□□ 0.61
MKS1-204ENST00000537529 ZKSCAN1P17029 563 aaPredicted RBP18.85■□□□□ 0.61
MKS1-204ENST00000537529 KCNJ4P48050 445 aa18.85■□□□□ 0.61
MKS1-204ENST00000537529 TCIRG1Q13488 830 aa18.85■□□□□ 0.61
MKS1-204ENST00000537529 GPR108Q9NPR9 543 aa18.85■□□□□ 0.61
MKS1-204ENST00000537529 MED23Q9ULK4 1368 aa18.84■□□□□ 0.61
MKS1-204ENST00000537529 CASTP20810 708 aaKnown RBP18.84■□□□□ 0.61
MKS1-204ENST00000537529 IL15P40933 162 aaPredicted RBP18.84■□□□□ 0.61
MKS1-204ENST00000537529 NECTIN1Q15223 517 aa18.84■□□□□ 0.61
MKS1-204ENST00000537529 KLHL40Q2TBA0 621 aa18.84■□□□□ 0.61
MKS1-204ENST00000537529 RBM8AQ9Y5S9 174 aaKnown RBP18.84■□□□□ 0.61
MKS1-204ENST00000537529 A0A0D9SFI3 127 aa18.83■□□□□ 0.61
MKS1-204ENST00000537529 AK2P54819 239 aa18.83■□□□□ 0.61
MKS1-204ENST00000537529 MAP4K1Q92918 833 aa18.83■□□□□ 0.61
MKS1-204ENST00000537529 DBNDD2Q9BQY9 259 aa18.83■□□□□ 0.61
MKS1-204ENST00000537529 LIMCH1Q9UPQ0 1083 aa18.83■□□□□ 0.61
MKS1-204ENST00000537529 BCL9O00512 1426 aa18.83■□□□□ 0.6
MKS1-204ENST00000537529 BRD1O95696 1058 aa18.83■□□□□ 0.6
MKS1-204ENST00000537529 TRIM28Q13263 835 aaKnown RBP18.83■□□□□ 0.6
MKS1-204ENST00000537529 ATG9AQ7Z3C6 839 aa18.83■□□□□ 0.6
MKS1-204ENST00000537529 JAKMIP1Q96N16 626 aaKnown RBP18.83■□□□□ 0.6
MKS1-204ENST00000537529 ZNF330Q9Y3S2 320 aaPredicted RBP18.83■□□□□ 0.6
MKS1-204ENST00000537529 DDX49Q9Y6V7 483 aaKnown RBP18.83■□□□□ 0.6
MKS1-204ENST00000537529 CIAO1O76071 339 aa18.82■□□□□ 0.6
MKS1-204ENST00000537529 CREB3L3Q68CJ9 461 aa18.82■□□□□ 0.6
MKS1-204ENST00000537529 HAUS7Q99871 368 aa18.82■□□□□ 0.6
MKS1-204ENST00000537529 CYP46A1Q9Y6A2 500 aa18.82■□□□□ 0.6
MKS1-204ENST00000537529 ITGB4P16144 1822 aa18.82■□□□□ 0.6
MKS1-204ENST00000537529 VPS53Q5VIR6 699 aa18.81■□□□□ 0.6
MKS1-204ENST00000537529 RNF20Q5VTR2 975 aa18.81■□□□□ 0.6
MKS1-204ENST00000537529 ZSWIM6Q9HCJ5 1215 aa18.81■□□□□ 0.6
MKS1-204ENST00000537529 PDRG1Q9NUG6 133 aa18.81■□□□□ 0.6
MKS1-204ENST00000537529 JCADQ9P266 1359 aa18.81■□□□□ 0.6
MKS1-204ENST00000537529 EYA2O00167 538 aa18.81■□□□□ 0.6
MKS1-204ENST00000537529 EXOC5O00471 708 aa18.81■□□□□ 0.6
MKS1-204ENST00000537529 RUFY3Q7L099 469 aa18.81■□□□□ 0.6
MKS1-204ENST00000537529 LMBRD1Q9NUN5 540 aa18.81■□□□□ 0.6
MKS1-204ENST00000537529 PSMA5P28066 241 aa18.8■□□□□ 0.6
MKS1-204ENST00000537529 MRE11P49959 708 aa18.8■□□□□ 0.6
MKS1-204ENST00000537529 DNAJC2Q99543 621 aaKnown RBP18.8■□□□□ 0.6
MKS1-204ENST00000537529 WNK3Q9BYP7 1800 aa18.8■□□□□ 0.6
MKS1-204ENST00000537529 ZNF609O15014 1411 aa18.8■□□□□ 0.6
MKS1-204ENST00000537529 MAP3K15Q6ZN16 1313 aa18.8■□□□□ 0.6
MKS1-204ENST00000537529 SLC27A2O14975 620 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms