RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 ITGAEP38570 1179 aa8.81□□□□□ -1
USP28-202ENST00000535607 TMCO4Q5TGY1 634 aa8.81□□□□□ -1
USP28-202ENST00000535607 PURBQ96QR8 312 aaKnown RBP8.81□□□□□ -1
USP28-202ENST00000535607 IRX2Q9BZI1 471 aaPredicted RBP8.81□□□□□ -1
USP28-202ENST00000535607 CCDC9Q9Y3X0 531 aaKnown RBP8.81□□□□□ -1
USP28-202ENST00000535607 RNF144AP50876 292 aaPredicted RBP8.8□□□□□ -1
USP28-202ENST00000535607 EPHA4P54764 986 aa8.8□□□□□ -1
USP28-202ENST00000535607 FKBP5Q13451 457 aaPredicted RBP8.8□□□□□ -1
USP28-202ENST00000535607 NBPF1Q3BBV0 1214 aa8.8□□□□□ -1
USP28-202ENST00000535607 KDF1Q8NAX2 398 aaPredicted RBP8.8□□□□□ -1
USP28-202ENST00000535607 GNEQ9Y223 722 aaKnown RBP8.8□□□□□ -1
USP28-202ENST00000535607 TONSLQ96HA7 1378 aa8.8□□□□□ -1
USP28-202ENST00000535607 PPRC1Q5VV67 1664 aaKnown RBP8.8□□□□□ -1
USP28-202ENST00000535607 DAPK1P53355 1430 aa8.8□□□□□ -1
USP28-202ENST00000535607 PLXNC1O60486 1568 aa8.79□□□□□ -1
USP28-202ENST00000535607 ADGRL1O94910 1474 aa8.79□□□□□ -1
USP28-202ENST00000535607 ADGRL2O95490 1459 aa8.79□□□□□ -1
USP28-202ENST00000535607 ZNF518AQ6AHZ1 1483 aa8.79□□□□□ -1
USP28-202ENST00000535607 MBD5Q9P267 1494 aa8.79□□□□□ -1
USP28-202ENST00000535607 TTLL8A6PVC2 850 aa8.79□□□□□ -1
USP28-202ENST00000535607 HNRNPUQ00839 825 aaKnown RBP eCLIP8.79□□□□□ -1
USP28-202ENST00000535607 FOXK2Q01167 660 aa8.79□□□□□ -1
USP28-202ENST00000535607 EFCAB2Q5VUJ9 269 aa8.79□□□□□ -1
USP28-202ENST00000535607 TAS1R3Q7RTX0 852 aa8.79□□□□□ -1
USP28-202ENST00000535607 LYSMD3Q7Z3D4 306 aa8.79□□□□□ -1
USP28-202ENST00000535607 STAG2Q8N3U4 1231 aa8.79□□□□□ -1
USP28-202ENST00000535607 COL26A1Q96A83 441 aa8.79□□□□□ -1
USP28-202ENST00000535607 BIN2Q9UBW5 565 aaPredicted RBP8.79□□□□□ -1
USP28-202ENST00000535607 GCC2Q8IWJ2 1684 aa8.78□□□□□ -1
USP28-202ENST00000535607 KDM5CP41229 1560 aa8.78□□□□□ -1
USP28-202ENST00000535607 ROCK1Q13464 1354 aa8.78□□□□□ -1
USP28-202ENST00000535607 BMP1P13497 986 aa8.78□□□□□ -1
USP28-202ENST00000535607 TATP17735 454 aaPredicted RBP8.78□□□□□ -1
USP28-202ENST00000535607 PLA2G4AP47712 749 aa8.78□□□□□ -1
USP28-202ENST00000535607 SMCPP49901 116 aaPredicted RBP8.78□□□□□ -1
USP28-202ENST00000535607 AIDAQ96BJ3 306 aa8.78□□□□□ -1
USP28-202ENST00000535607 NGLY1Q96IV0 654 aa8.78□□□□□ -1
USP28-202ENST00000535607 FHDC1Q9C0D6 1143 aaPredicted RBP8.78□□□□□ -1
USP28-202ENST00000535607 SLAIN2Q9P270 581 aa8.78□□□□□ -1
USP28-202ENST00000535607 INO80Q9ULG1 1556 aaPredicted RBP8.78□□□□□ -1
USP28-202ENST00000535607 ZMYM4Q5VZL5 1548 aa8.77□□□□□ -1.01
USP28-202ENST00000535607 NOS2P35228 1153 aa8.77□□□□□ -1.01
USP28-202ENST00000535607 CTSOP43234 321 aaPredicted RBP8.77□□□□□ -1.01
USP28-202ENST00000535607 NAA30Q147X3 362 aaPredicted RBP8.77□□□□□ -1.01
USP28-202ENST00000535607 TEAD4Q15561 434 aa8.77□□□□□ -1.01
USP28-202ENST00000535607 PHLDB3Q6NSJ2 640 aa8.77□□□□□ -1.01
USP28-202ENST00000535607 PRICKLE2Q7Z3G6 844 aa8.77□□□□□ -1.01
USP28-202ENST00000535607 TXNDC2Q86VQ3 553 aa8.77□□□□□ -1.01
USP28-202ENST00000535607 GLYCTKQ8IVS8 523 aa8.77□□□□□ -1.01
USP28-202ENST00000535607 L3MBTL2Q969R5 705 aa8.77□□□□□ -1.01
USP28-202ENST00000535607 HRH3Q9Y5N1 445 aa8.77□□□□□ -1.01
USP28-202ENST00000535607 POGZQ7Z3K3 1410 aa8.77□□□□□ -1.01
USP28-202ENST00000535607 ZFYVE16Q7Z3T8 1539 aa8.76□□□□□ -1.01
USP28-202ENST00000535607 SERPINB4P48594 390 aa8.76□□□□□ -1.01
USP28-202ENST00000535607 FAM50AQ14320 339 aaKnown RBP8.76□□□□□ -1.01
USP28-202ENST00000535607 C16orf46Q6P387 395 aa8.76□□□□□ -1.01
USP28-202ENST00000535607 C2orf49Q9BVC5 232 aaPredicted RBP8.76□□□□□ -1.01
USP28-202ENST00000535607 GRIP2Q9C0E4 1043 aa8.76□□□□□ -1.01
USP28-202ENST00000535607 NEUROD4Q9HD90 331 aa8.76□□□□□ -1.01
USP28-202ENST00000535607 USP35Q9P2H5 1018 aa8.76□□□□□ -1.01
USP28-202ENST00000535607 HFM1A2PYH4 1435 aa8.76□□□□□ -1.01
USP28-202ENST00000535607 ABCC5O15440 1437 aa8.76□□□□□ -1.01
USP28-202ENST00000535607 C9orf84Q5VXU9 1444 aa8.76□□□□□ -1.01
USP28-202ENST00000535607 HECW2Q9P2P5 1572 aa8.76□□□□□ -1.01
USP28-202ENST00000535607 RICTORQ6R327 1708 aa8.75□□□□□ -1.01
USP28-202ENST00000535607 RTEL1-TNFRSF6BF6WH68 1400 aa8.75□□□□□ -1.01
USP28-202ENST00000535607 H3BRB1 525 aa8.75□□□□□ -1.01
USP28-202ENST00000535607 C21orf2O43822 256 aa8.75□□□□□ -1.01
USP28-202ENST00000535607 MAN1A2O60476 641 aa8.75□□□□□ -1.01
USP28-202ENST00000535607 SF3B2Q13435 895 aaKnown RBP8.75□□□□□ -1.01
USP28-202ENST00000535607 HIF1AQ16665 826 aa8.75□□□□□ -1.01
USP28-202ENST00000535607 GTF3C2Q8WUA4 911 aaPredicted RBP8.75□□□□□ -1.01
USP28-202ENST00000535607 TUT1Q9H6E5 874 aaKnown RBP8.75□□□□□ -1.01
USP28-202ENST00000535607 EGFL7Q9UHF1 273 aa8.75□□□□□ -1.01
USP28-202ENST00000535607 IQSEC3Q9UPP2 1182 aaPredicted RBP8.75□□□□□ -1.01
USP28-202ENST00000535607 PARP3Q9Y6F1 533 aa8.75□□□□□ -1.01
USP28-202ENST00000535607 FIGNL2A6NMB9 653 aa8.74□□□□□ -1.01
USP28-202ENST00000535607 PHKA2P46019 1235 aa8.74□□□□□ -1.01
USP28-202ENST00000535607 FOXD4L5Q5VV16 416 aaPredicted RBP8.74□□□□□ -1.01
USP28-202ENST00000535607 BICDL1Q6ZP65 573 aa8.74□□□□□ -1.01
USP28-202ENST00000535607 SND1Q7KZF4 910 aaKnown RBP eCLIP8.74□□□□□ -1.01
USP28-202ENST00000535607 CRIPAKQ8N1N5 446 aa8.74□□□□□ -1.01
USP28-202ENST00000535607 RNF217Q8TC41 542 aa8.74□□□□□ -1.01
USP28-202ENST00000535607 ZFP42Q96MM3 310 aa8.74□□□□□ -1.01
USP28-202ENST00000535607 HCN4Q9Y3Q4 1203 aa8.74□□□□□ -1.01
USP28-202ENST00000535607 DENND4BO75064 1496 aaPredicted RBP8.74□□□□□ -1.01
USP28-202ENST00000535607 ATP7AQ04656 1500 aa8.74□□□□□ -1.01
USP28-202ENST00000535607 ARHGEF12Q9NZN5 1544 aa8.74□□□□□ -1.01
USP28-202ENST00000535607 SCAPERQ9BY12 1400 aa8.73□□□□□ -1.01
USP28-202ENST00000535607 MLH3Q9UHC1 1453 aa8.73□□□□□ -1.01
USP28-202ENST00000535607 SPATA31C2B4DYI2 1134 aa8.73□□□□□ -1.01
USP28-202ENST00000535607 POU4F2Q12837 409 aa8.73□□□□□ -1.01
USP28-202ENST00000535607 AAMPQ13685 434 aa8.73□□□□□ -1.01
USP28-202ENST00000535607 CCDC27Q2M243 656 aa8.73□□□□□ -1.01
USP28-202ENST00000535607 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.73□□□□□ -1.01
USP28-202ENST00000535607 C4orf17Q53FE4 359 aa8.73□□□□□ -1.01
USP28-202ENST00000535607 WDR44Q5JSH3 913 aa8.73□□□□□ -1.01
USP28-202ENST00000535607 RHPN1Q8TCX5 695 aa8.73□□□□□ -1.01
USP28-202ENST00000535607 SENP2Q9HC62 589 aa8.73□□□□□ -1.01
USP28-202ENST00000535607 TIMMDC1Q9NPL8 285 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 178.7 ms