RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	CARMIL3	Q8ND23	1372 aa		11.89	□□□□□ -0.51
NXF1-209	ENST00000531474	ARFGEF2	Q9Y6D5	1785 aa		11.88	□□□□□ -0.51
NXF1-209	ENST00000531474	ATP5J2-PTCD1	G3V325	749 aa		11.88	□□□□□ -0.51
NXF1-209	ENST00000531474	POLRMT	O00411	1230 aa	Known RBP	11.88	□□□□□ -0.51
NXF1-209	ENST00000531474	NPHP1	O15259	732 aa		11.88	□□□□□ -0.51
NXF1-209	ENST00000531474	NEXN	Q0ZGT2	675 aa		11.88	□□□□□ -0.51
NXF1-209	ENST00000531474	TCIRG1	Q13488	830 aa		11.88	□□□□□ -0.51
NXF1-209	ENST00000531474	ZNF34	Q8IZ26	560 aa		11.88	□□□□□ -0.51
NXF1-209	ENST00000531474	DNAAF4	Q8WXU2	420 aa		11.88	□□□□□ -0.51
NXF1-209	ENST00000531474	SGIP1	Q9BQI5	828 aa		11.88	□□□□□ -0.51
NXF1-209	ENST00000531474	UBN2	Q6ZU65	1347 aa		11.87	□□□□□ -0.51
NXF1-209	ENST00000531474	SERPINB2	P05120	415 aa		11.87	□□□□□ -0.51
NXF1-209	ENST00000531474	PARP10	Q53GL7	1025 aa		11.87	□□□□□ -0.51
NXF1-209	ENST00000531474	SLC4A10	Q6U841	1118 aa		11.87	□□□□□ -0.51
NXF1-209	ENST00000531474	NBPF5P	Q86XG9	351 aa	Predicted RBP	11.87	□□□□□ -0.51
NXF1-209	ENST00000531474	KLHL34	Q8N239	644 aa		11.87	□□□□□ -0.51
NXF1-209	ENST00000531474	ISCA1	Q9BUE6	129 aa		11.87	□□□□□ -0.51
NXF1-209	ENST00000531474	API5	Q9BZZ5	524 aa	Known RBP	11.87	□□□□□ -0.51
NXF1-209	ENST00000531474	PPP1R1B	Q9UD71	204 aa	Predicted RBP	11.87	□□□□□ -0.51
NXF1-209	ENST00000531474	SUSD4	Q5VX71	490 aa		11.86	□□□□□ -0.51
NXF1-209	ENST00000531474	NLRP10	Q86W26	655 aa		11.86	□□□□□ -0.51
NXF1-209	ENST00000531474	CNBD1	Q8NA66	436 aa		11.86	□□□□□ -0.51
NXF1-209	ENST00000531474	FOXD4L1	Q9NU39	408 aa		11.86	□□□□□ -0.51
NXF1-209	ENST00000531474	COL24A1	Q17RW2	1714 aa		11.86	□□□□□ -0.51
NXF1-209	ENST00000531474	IGKV5-2	P06315	115 aa		11.85	□□□□□ -0.51
NXF1-209	ENST00000531474	TRIM27	P14373	513 aa		11.85	□□□□□ -0.51
NXF1-209	ENST00000531474	GTF2E1	P29083	439 aa	Predicted RBP	11.85	□□□□□ -0.51
NXF1-209	ENST00000531474	CWF19L2	Q2TBE0	894 aa	Known RBP	11.85	□□□□□ -0.51
NXF1-209	ENST00000531474	PPP1R42	Q7Z4L9	355 aa		11.85	□□□□□ -0.51
NXF1-209	ENST00000531474	CCDC24	Q8N4L8	307 aa		11.85	□□□□□ -0.51
NXF1-209	ENST00000531474	UTP14A	Q9BVJ6	771 aa	Known RBP	11.85	□□□□□ -0.51
NXF1-209	ENST00000531474	NYX	Q9GZU5	481 aa		11.85	□□□□□ -0.51
NXF1-209	ENST00000531474	CWC25	Q9NXE8	425 aa	Predicted RBP	11.85	□□□□□ -0.51
NXF1-209	ENST00000531474	NUP98	P52948	1817 aa		11.85	□□□□□ -0.51
NXF1-209	ENST00000531474	ANKRD36C	Q5JPF3	1778 aa		11.84	□□□□□ -0.51
NXF1-209	ENST00000531474	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.84	□□□□□ -0.51
NXF1-209	ENST00000531474	NEURL1B	A8MQ27	555 aa		11.84	□□□□□ -0.51
NXF1-209	ENST00000531474	NTSR2	O95665	410 aa		11.84	□□□□□ -0.51
NXF1-209	ENST00000531474	ST5	P78524	1137 aa		11.84	□□□□□ -0.51
NXF1-209	ENST00000531474	TRIM28	Q13263	835 aa	Known RBP	11.84	□□□□□ -0.51
NXF1-209	ENST00000531474	BEND3	Q5T5X7	828 aa		11.84	□□□□□ -0.51
NXF1-209	ENST00000531474	PRR5L	Q6MZQ0	368 aa		11.84	□□□□□ -0.51
NXF1-209	ENST00000531474	TPTE2	Q6XPS3	522 aa		11.84	□□□□□ -0.51
NXF1-209	ENST00000531474	NUTM1	Q86Y26	1132 aa		11.84	□□□□□ -0.51
NXF1-209	ENST00000531474	LINS1	Q8NG48	757 aa		11.84	□□□□□ -0.51
NXF1-209	ENST00000531474	TRMT112	Q9UI30	125 aa	Known RBP	11.84	□□□□□ -0.51
NXF1-209	ENST00000531474	LRP5	O75197	1615 aa		11.84	□□□□□ -0.51
NXF1-209	ENST00000531474	CACNA1F	O60840	1977 aa		11.84	□□□□□ -0.51
NXF1-209	ENST00000531474	PXDNL	A1KZ92	1463 aa		11.83	□□□□□ -0.52
NXF1-209	ENST00000531474	RLBP1	P12271	317 aa		11.83	□□□□□ -0.52
NXF1-209	ENST00000531474	ERFE	Q4G0M1	354 aa		11.83	□□□□□ -0.52
NXF1-209	ENST00000531474	CCDC191	Q8NCU4	936 aa		11.83	□□□□□ -0.52
NXF1-209	ENST00000531474	SRCIN1	Q9C0H9	1055 aa		11.83	□□□□□ -0.52
NXF1-209	ENST00000531474	TNN	Q9UQP3	1299 aa		11.83	□□□□□ -0.52
NXF1-209	ENST00000531474	C10orf71	Q711Q0	1435 aa		11.83	□□□□□ -0.52
NXF1-209	ENST00000531474	ABCC12	Q96J65	1359 aa		11.82	□□□□□ -0.52
NXF1-209	ENST00000531474	PDE4A	P27815	886 aa		11.82	□□□□□ -0.52
NXF1-209	ENST00000531474	CCT4	P50991	539 aa	Known RBP	11.82	□□□□□ -0.52
NXF1-209	ENST00000531474	HDAC1	Q13547	482 aa	Predicted RBP	11.82	□□□□□ -0.52
NXF1-209	ENST00000531474	GCKR	Q14397	625 aa		11.82	□□□□□ -0.52
NXF1-209	ENST00000531474	RTL5	Q5HYW3	569 aa	Predicted RBP	11.82	□□□□□ -0.52
NXF1-209	ENST00000531474	ITPRIP	Q8IWB1	547 aa		11.82	□□□□□ -0.52
NXF1-209	ENST00000531474	JARID2	Q92833	1246 aa	Predicted RBP	11.82	□□□□□ -0.52
NXF1-209	ENST00000531474	FAM89A	Q96GI7	184 aa		11.82	□□□□□ -0.52
NXF1-209	ENST00000531474	BACH2	Q9BYV9	841 aa		11.82	□□□□□ -0.52
NXF1-209	ENST00000531474	ABCC4	O15439	1325 aa		11.82	□□□□□ -0.52
NXF1-209	ENST00000531474	SH3TC1	Q8TE82	1336 aa		11.82	□□□□□ -0.52
NXF1-209	ENST00000531474	NRXN2	Q9P2S2	1712 aa		11.81	□□□□□ -0.52
NXF1-209	ENST00000531474	ALDH1L1	O75891	902 aa		11.81	□□□□□ -0.52
NXF1-209	ENST00000531474	IGHD	P01880	384 aa		11.81	□□□□□ -0.52
NXF1-209	ENST00000531474	ANP32A	P39687	249 aa	Known RBP	11.81	□□□□□ -0.52
NXF1-209	ENST00000531474	SYNE4	Q8N205	404 aa		11.81	□□□□□ -0.52
NXF1-209	ENST00000531474	FHDC1	Q9C0D6	1143 aa	Predicted RBP	11.81	□□□□□ -0.52
NXF1-209	ENST00000531474	PCCA	P05165	728 aa	Predicted RBP	11.8	□□□□□ -0.52
NXF1-209	ENST00000531474	HCLS1	P14317	486 aa	Predicted RBP	11.8	□□□□□ -0.52
NXF1-209	ENST00000531474	UBE3B	Q7Z3V4	1068 aa		11.8	□□□□□ -0.52
NXF1-209	ENST00000531474	TMEM57	Q8N5G2	664 aa		11.8	□□□□□ -0.52
NXF1-209	ENST00000531474	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	11.8	□□□□□ -0.52
NXF1-209	ENST00000531474	BRIP1	Q9BX63	1249 aa		11.8	□□□□□ -0.52
NXF1-209	ENST00000531474	ZBTB40	Q9NUA8	1239 aa		11.8	□□□□□ -0.52
NXF1-209	ENST00000531474	C9orf78	Q9NZ63	289 aa	Predicted RBP	11.8	□□□□□ -0.52
NXF1-209	ENST00000531474	CD2AP	Q9Y5K6	639 aa		11.8	□□□□□ -0.52
NXF1-209	ENST00000531474	AFDN	P55196	1824 aa	Known RBP	11.8	□□□□□ -0.52
NXF1-209	ENST00000531474	GRM8	O00222	908 aa		11.79	□□□□□ -0.52
NXF1-209	ENST00000531474	IRS4	O14654	1257 aa	Predicted RBP	11.79	□□□□□ -0.52
NXF1-209	ENST00000531474	PDE6B	P35913	854 aa		11.79	□□□□□ -0.52
NXF1-209	ENST00000531474	FAM161A	Q3B820	660 aa		11.79	□□□□□ -0.52
NXF1-209	ENST00000531474	C2CD5	Q86YS7	1000 aa		11.79	□□□□□ -0.52
NXF1-209	ENST00000531474	PCDHB15	Q9Y5E8	787 aa		11.79	□□□□□ -0.52
NXF1-209	ENST00000531474		H7C1W4	665 aa		11.78	□□□□□ -0.52
NXF1-209	ENST00000531474	CHRNA5	P30532	468 aa		11.78	□□□□□ -0.52
NXF1-209	ENST00000531474	SLC10A5	Q5PT55	438 aa		11.78	□□□□□ -0.52
NXF1-209	ENST00000531474	INTS3	Q68E01	1043 aa	Known RBP	11.78	□□□□□ -0.52
NXF1-209	ENST00000531474	NLGN2	Q8NFZ4	835 aa		11.78	□□□□□ -0.52
NXF1-209	ENST00000531474	CDHR2	Q9BYE9	1310 aa		11.78	□□□□□ -0.52
NXF1-209	ENST00000531474	TNRC6C	Q9HCJ0	1690 aa	Known RBP	11.78	□□□□□ -0.52
NXF1-209	ENST00000531474	RIC1	Q4ADV7	1423 aa		11.77	□□□□□ -0.52
NXF1-209	ENST00000531474	ZBTB7B	O15156	539 aa	Predicted RBP	11.77	□□□□□ -0.53
NXF1-209	ENST00000531474	HSP90B1	P14625	803 aa	Known RBP	11.77	□□□□□ -0.53
NXF1-209	ENST00000531474	C3orf67	Q6ZVT6	689 aa		11.77	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms