RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 RNF123Q5XPI4 1314 aa17.26■□□□□ 0.35
VPS28-211ENST00000530790 C16orf71Q8IYS4 520 aaPredicted RBP17.26■□□□□ 0.35
VPS28-211ENST00000530790 UTP14AQ9BVJ6 771 aaKnown RBP17.26■□□□□ 0.35
VPS28-211ENST00000530790 HYPKQ9NX55 129 aa17.25■□□□□ 0.35
VPS28-211ENST00000530790 TOMM70O94826 608 aa17.24■□□□□ 0.35
VPS28-211ENST00000530790 CCDC27Q2M243 656 aa17.24■□□□□ 0.35
VPS28-211ENST00000530790 PLBD2Q8NHP8 589 aa17.24■□□□□ 0.35
VPS28-211ENST00000530790 C7orf43Q8WVR3 580 aa17.24■□□□□ 0.35
VPS28-211ENST00000530790 GLTPD2A6NH11 291 aa17.23■□□□□ 0.35
VPS28-211ENST00000530790 TCIRG1Q13488 830 aa17.23■□□□□ 0.35
VPS28-211ENST00000530790 NLRP10Q86W26 655 aa17.23■□□□□ 0.35
VPS28-211ENST00000530790 ELL2O00472 640 aaPredicted RBP17.22■□□□□ 0.35
VPS28-211ENST00000530790 HOXA10P31260 410 aaPredicted RBP17.22■□□□□ 0.35
VPS28-211ENST00000530790 FKBP4Q02790 459 aaKnown RBP eCLIP17.22■□□□□ 0.35
VPS28-211ENST00000530790 ANKRD13DQ6ZTN6 518 aa17.22■□□□□ 0.35
VPS28-211ENST00000530790 RTKN2Q8IZC4 609 aa17.22■□□□□ 0.35
VPS28-211ENST00000530790 RBM17Q96I25 401 aaKnown RBP17.22■□□□□ 0.35
VPS28-211ENST00000530790 NLRP3Q96P20 1036 aa17.22■□□□□ 0.35
VPS28-211ENST00000530790 CHMP4AQ9BY43 222 aa17.22■□□□□ 0.35
VPS28-211ENST00000530790 CCDC88AQ3V6T2 1871 aa17.21■□□□□ 0.35
VPS28-211ENST00000530790 HSPA6P17066 643 aa17.21■□□□□ 0.35
VPS28-211ENST00000530790 GOLGA2Q08379 1002 aa17.21■□□□□ 0.35
VPS28-211ENST00000530790 DPY19L2Q6NUT2 758 aa17.21■□□□□ 0.35
VPS28-211ENST00000530790 OLFM4Q6UX06 510 aa17.21■□□□□ 0.35
VPS28-211ENST00000530790 WWC1Q8IX03 1113 aa17.21■□□□□ 0.35
VPS28-211ENST00000530790 RBM46Q8TBY0 533 aaKnown RBP17.21■□□□□ 0.35
VPS28-211ENST00000530790 RRAGCQ9HB90 399 aa17.21■□□□□ 0.35
VPS28-211ENST00000530790 TRMT112Q9UI30 125 aaKnown RBP17.21■□□□□ 0.35
VPS28-211ENST00000530790 DICER1Q9UPY3 1922 aaKnown RBP17.21■□□□□ 0.35
VPS28-211ENST00000530790 SH3TC1Q8TE82 1336 aa17.21■□□□□ 0.34
VPS28-211ENST00000530790 PPEF1O14829 653 aaPredicted RBP17.2■□□□□ 0.34
VPS28-211ENST00000530790 C3orf67Q6ZVT6 689 aa17.2■□□□□ 0.34
VPS28-211ENST00000530790 C8orf58Q8NAV2 365 aa17.2■□□□□ 0.34
VPS28-211ENST00000530790 TSR2Q969E8 191 aaKnown RBP17.2■□□□□ 0.34
VPS28-211ENST00000530790 CRAMP1Q96RY5 1269 aa17.2■□□□□ 0.34
VPS28-211ENST00000530790 NCBP3Q53F19 620 aaKnown RBP17.19■□□□□ 0.34
VPS28-211ENST00000530790 SLC10A5Q5PT55 438 aa17.19■□□□□ 0.34
VPS28-211ENST00000530790 CC2D2BQ6DHV5 1058 aa17.19■□□□□ 0.34
VPS28-211ENST00000530790 ZNF277Q9NRM2 450 aaPredicted RBP17.19■□□□□ 0.34
VPS28-211ENST00000530790 SNED1Q8TER0 1413 aa17.19■□□□□ 0.34
VPS28-211ENST00000530790 IL16Q14005 1332 aa17.19■□□□□ 0.34
VPS28-211ENST00000530790 CCDC30Q5VVM6 783 aa17.18■□□□□ 0.34
VPS28-211ENST00000530790 WDR90Q96KV7 1748 aa17.18■□□□□ 0.34
VPS28-211ENST00000530790 ATP5J2-PTCD1G3V325 749 aa17.17■□□□□ 0.34
VPS28-211ENST00000530790 HCLS1P14317 486 aaPredicted RBP17.17■□□□□ 0.34
VPS28-211ENST00000530790 VEGFAP15692 232 aaPredicted RBP17.17■□□□□ 0.34
VPS28-211ENST00000530790 GRIPAP1Q4V328 841 aa17.17■□□□□ 0.34
VPS28-211ENST00000530790 RIC3Q7Z5B4 369 aa17.17■□□□□ 0.34
VPS28-211ENST00000530790 PSMD1Q99460 953 aa17.17■□□□□ 0.34
VPS28-211ENST00000530790 ISCA1Q9BUE6 129 aa17.17■□□□□ 0.34
VPS28-211ENST00000530790 ABCC4O15439 1325 aa17.17■□□□□ 0.34
VPS28-211ENST00000530790 CEP350Q5VT06 3117 aa17.16■□□□□ 0.34
VPS28-211ENST00000530790 LAMB2P55268 1798 aa17.16■□□□□ 0.34
VPS28-211ENST00000530790 IARSP41252 1262 aaKnown RBP17.16■□□□□ 0.34
VPS28-211ENST00000530790 FSTL1Q12841 308 aa17.16■□□□□ 0.34
VPS28-211ENST00000530790 SYNE4Q8N205 404 aa17.16■□□□□ 0.34
VPS28-211ENST00000530790 TSPYL6Q8N831 410 aa17.16■□□□□ 0.34
VPS28-211ENST00000530790 ZNF428Q96B54 188 aa17.16■□□□□ 0.34
VPS28-211ENST00000530790 TMX4Q9H1E5 349 aaPredicted RBP17.16■□□□□ 0.34
VPS28-211ENST00000530790 PHAXQ9H814 394 aaKnown RBP17.16■□□□□ 0.34
VPS28-211ENST00000530790 DDX58O95786 925 aaKnown RBP17.15■□□□□ 0.34
VPS28-211ENST00000530790 SMC1BQ8NDV3 1235 aa17.15■□□□□ 0.34
VPS28-211ENST00000530790 STK31Q9BXU1 1019 aa17.15■□□□□ 0.34
VPS28-211ENST00000530790 DDX60Q8IY21 1712 aaKnown RBP17.14■□□□□ 0.33
VPS28-211ENST00000530790 TCERG1O14776 1098 aaKnown RBP17.14■□□□□ 0.33
VPS28-211ENST00000530790 TWISTNBQ3B726 338 aaPredicted RBP17.14■□□□□ 0.33
VPS28-211ENST00000530790 DDX46Q7L014 1031 aaKnown RBP17.14■□□□□ 0.33
VPS28-211ENST00000530790 FAM9BQ8IZU0 186 aa17.14■□□□□ 0.33
VPS28-211ENST00000530790 SALL2Q9Y467 1007 aaPredicted RBP17.14■□□□□ 0.33
VPS28-211ENST00000530790 FANCIQ9NVI1 1328 aa17.14■□□□□ 0.33
VPS28-211ENST00000530790 DDNO94850 711 aaPredicted RBP17.13■□□□□ 0.33
VPS28-211ENST00000530790 APLP1P51693 650 aa17.13■□□□□ 0.33
VPS28-211ENST00000530790 TRIM28Q13263 835 aaKnown RBP17.13■□□□□ 0.33
VPS28-211ENST00000530790 JDP2Q8WYK2 163 aa17.13■□□□□ 0.33
VPS28-211ENST00000530790 FAM89AQ96GI7 184 aa17.13■□□□□ 0.33
VPS28-211ENST00000530790 ATP6V0A2Q9Y487 856 aa17.13■□□□□ 0.33
VPS28-211ENST00000530790 GRAPQ13588 217 aa17.12■□□□□ 0.33
VPS28-211ENST00000530790 SLC51AQ86UW1 340 aa17.12■□□□□ 0.33
VPS28-211ENST00000530790 WDR63Q8IWG1 891 aa17.12■□□□□ 0.33
VPS28-211ENST00000530790 GRAPLQ8TC17 118 aaPredicted RBP17.12■□□□□ 0.33
VPS28-211ENST00000530790 MYD88Q99836 296 aa17.12■□□□□ 0.33
VPS28-211ENST00000530790 ZNF541Q9H0D2 1346 aa17.12■□□□□ 0.33
VPS28-211ENST00000530790 IQCA1LA6NCM1 817 aa17.11■□□□□ 0.33
VPS28-211ENST00000530790 BBOX1O75936 387 aa17.11■□□□□ 0.33
VPS28-211ENST00000530790 RTL5Q5HYW3 569 aaPredicted RBP17.11■□□□□ 0.33
VPS28-211ENST00000530790 POTECB2RU33 542 aa17.1■□□□□ 0.33
VPS28-211ENST00000530790 FZD9O00144 591 aa17.1■□□□□ 0.33
VPS28-211ENST00000530790 IRS4O14654 1257 aaPredicted RBP17.1■□□□□ 0.33
VPS28-211ENST00000530790 HSP90B1P14625 803 aaKnown RBP17.1■□□□□ 0.33
VPS28-211ENST00000530790 TMC4Q7Z404 712 aa17.1■□□□□ 0.33
VPS28-211ENST00000530790 LARGE2Q8N3Y3 721 aa17.1■□□□□ 0.33
VPS28-211ENST00000530790 ZBTB38Q8NAP3 1195 aaPredicted RBP17.1■□□□□ 0.33
VPS28-211ENST00000530790 CCDC191Q8NCU4 936 aa17.1■□□□□ 0.33
VPS28-211ENST00000530790 L3MBTL3Q96JM7 780 aaPredicted RBP17.1■□□□□ 0.33
VPS28-211ENST00000530790 METTL22Q9BUU2 404 aaPredicted RBP17.1■□□□□ 0.33
VPS28-211ENST00000530790 MAP3K2Q9Y2U5 619 aa17.1■□□□□ 0.33
VPS28-211ENST00000530790 COL4A5P29400 1685 aa17.1■□□□□ 0.33
VPS28-211ENST00000530790 SUPT20HQ8NEM7 779 aa17.09■□□□□ 0.33
VPS28-211ENST00000530790 CWC25Q9NXE8 425 aaPredicted RBP17.09■□□□□ 0.33
VPS28-211ENST00000530790 LRRC37AA6NMS7 1700 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms