RNA–Protein interactions for RNA: ENST00000529828.5

PTPRC-213, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 2,336 nt, Biotype non stop decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-213ENST00000529828 SLX4Q8IY92 1834 aa4.79□□□□□ -1.64
PTPRC-213ENST00000529828 TNRC18O15417 2968 aaPredicted RBP4.79□□□□□ -1.64
PTPRC-213ENST00000529828 LTBP3Q9NS15 1303 aa4.79□□□□□ -1.64
PTPRC-213ENST00000529828 A0A087WZG4 1122 aa4.79□□□□□ -1.64
PTPRC-213ENST00000529828 KCNQ3O43525 872 aa4.79□□□□□ -1.64
PTPRC-213ENST00000529828 CAMTA2O94983 1202 aa4.79□□□□□ -1.64
PTPRC-213ENST00000529828 ITGBL1O95965 494 aaPredicted RBP4.79□□□□□ -1.64
PTPRC-213ENST00000529828 SRGNP10124 158 aa4.79□□□□□ -1.64
PTPRC-213ENST00000529828 HSPA5P11021 654 aaKnown RBP4.79□□□□□ -1.64
PTPRC-213ENST00000529828 EPHX2P34913 555 aa4.79□□□□□ -1.64
PTPRC-213ENST00000529828 CCDC93Q567U6 631 aa4.79□□□□□ -1.64
PTPRC-213ENST00000529828 SLC51AQ86UW1 340 aa4.79□□□□□ -1.64
PTPRC-213ENST00000529828 VSIG10Q8N0Z9 540 aa4.79□□□□□ -1.64
PTPRC-213ENST00000529828 CNKSR1Q969H4 720 aa4.79□□□□□ -1.64
PTPRC-213ENST00000529828 MASTLQ96GX5 879 aa4.79□□□□□ -1.64
PTPRC-213ENST00000529828 ZBTB47Q9UFB7 747 aaPredicted RBP4.79□□□□□ -1.64
PTPRC-213ENST00000529828 HACL1Q9UJ83 578 aa4.79□□□□□ -1.64
PTPRC-213ENST00000529828 HEG1Q9ULI3 1381 aa4.79□□□□□ -1.64
PTPRC-213ENST00000529828 DICER1Q9UPY3 1922 aaKnown RBP4.78□□□□□ -1.64
PTPRC-213ENST00000529828 UBR2Q8IWV8 1755 aa4.78□□□□□ -1.64
PTPRC-213ENST00000529828 PRAMEF22A3QJZ6 481 aa4.78□□□□□ -1.64
PTPRC-213ENST00000529828 TEFQ10587 303 aa4.78□□□□□ -1.64
PTPRC-213ENST00000529828 STYK1Q6J9G0 422 aa4.78□□□□□ -1.64
PTPRC-213ENST00000529828 CNTROBQ8N137 903 aa4.78□□□□□ -1.64
PTPRC-213ENST00000529828 MARVELD3Q96A59 401 aa4.78□□□□□ -1.64
PTPRC-213ENST00000529828 L3MBTL3Q96JM7 780 aaPredicted RBP4.78□□□□□ -1.64
PTPRC-213ENST00000529828 WDR33Q9C0J8 1336 aaKnown RBP4.78□□□□□ -1.64
PTPRC-213ENST00000529828 RASSF10A6NK89 507 aa4.78□□□□□ -1.64
PTPRC-213ENST00000529828 IL6STP40189 918 aaPredicted RBP4.78□□□□□ -1.64
PTPRC-213ENST00000529828 FKBP4Q02790 459 aaKnown RBP eCLIP4.78□□□□□ -1.64
PTPRC-213ENST00000529828 DEFB115Q30KQ5 88 aa4.78□□□□□ -1.64
PTPRC-213ENST00000529828 CYP4F22Q6NT55 531 aa4.78□□□□□ -1.64
PTPRC-213ENST00000529828 ZNF790Q6PG37 636 aa4.78□□□□□ -1.64
PTPRC-213ENST00000529828 NPM2Q86SE8 214 aaKnown RBP4.78□□□□□ -1.64
PTPRC-213ENST00000529828 NBPF5PQ86XG9 351 aaPredicted RBP4.78□□□□□ -1.64
PTPRC-213ENST00000529828 DZIP3Q86Y13 1208 aaKnown RBP4.78□□□□□ -1.64
PTPRC-213ENST00000529828 RASEFQ8IZ41 740 aa4.78□□□□□ -1.64
PTPRC-213ENST00000529828 C7orf43Q8WVR3 580 aa4.78□□□□□ -1.64
PTPRC-213ENST00000529828 KNSTRNQ9Y448 316 aa4.78□□□□□ -1.64
PTPRC-213ENST00000529828 GJA3Q9Y6H8 435 aa4.78□□□□□ -1.64
PTPRC-213ENST00000529828 TRAF5O00463 557 aa4.77□□□□□ -1.65
PTPRC-213ENST00000529828 U2SURPO15042 1029 aaKnown RBP4.77□□□□□ -1.65
PTPRC-213ENST00000529828 SOGA3Q5TF21 947 aa4.77□□□□□ -1.65
PTPRC-213ENST00000529828 IL17REQ8NFR9 667 aa4.77□□□□□ -1.65
PTPRC-213ENST00000529828 PDZRN3Q9UPQ7 1066 aa4.77□□□□□ -1.65
PTPRC-213ENST00000529828 VIRMAQ69YN4 1812 aaKnown RBP4.77□□□□□ -1.65
PTPRC-213ENST00000529828 TCERG1O14776 1098 aaKnown RBP4.77□□□□□ -1.65
PTPRC-213ENST00000529828 DIAPH1O60610 1272 aaKnown RBP4.77□□□□□ -1.65
PTPRC-213ENST00000529828 AOC2O75106 756 aa4.77□□□□□ -1.65
PTPRC-213ENST00000529828 NPR1P16066 1061 aa4.77□□□□□ -1.65
PTPRC-213ENST00000529828 IARSP41252 1262 aaKnown RBP4.77□□□□□ -1.65
PTPRC-213ENST00000529828 EIF4G2P78344 907 aaKnown RBP eCLIP4.77□□□□□ -1.65
PTPRC-213ENST00000529828 MAP2K1Q02750 393 aaPredicted RBP4.77□□□□□ -1.65
PTPRC-213ENST00000529828 MLLT1Q03111 559 aaPredicted RBP4.77□□□□□ -1.65
PTPRC-213ENST00000529828 CC2D1BQ5T0F9 858 aaKnown RBP4.77□□□□□ -1.65
PTPRC-213ENST00000529828 SYNE4Q8N205 404 aa4.77□□□□□ -1.65
PTPRC-213ENST00000529828 CAPNS2Q96L46 248 aa4.77□□□□□ -1.65
PTPRC-213ENST00000529828 FMNL2Q96PY5 1086 aa4.77□□□□□ -1.65
PTPRC-213ENST00000529828 USP16Q9Y5T5 823 aa4.77□□□□□ -1.65
PTPRC-213ENST00000529828 COL4A5P29400 1685 aa4.76□□□□□ -1.65
PTPRC-213ENST00000529828 ADAMTSL1Q8N6G6 1762 aa4.76□□□□□ -1.65
PTPRC-213ENST00000529828 SCN4AP35499 1836 aa4.76□□□□□ -1.65
PTPRC-213ENST00000529828 AMER1Q5JTC6 1135 aaPredicted RBP4.76□□□□□ -1.65
PTPRC-213ENST00000529828 MIER1Q8N108 512 aa4.76□□□□□ -1.65
PTPRC-213ENST00000529828 DDX21Q9NR30 783 aaKnown RBP eCLIP4.76□□□□□ -1.65
PTPRC-213ENST00000529828 NIP7Q9Y221 180 aaKnown RBP eCLIP4.76□□□□□ -1.65
PTPRC-213ENST00000529828 BCORQ6W2J9 1755 aa4.76□□□□□ -1.65
PTPRC-213ENST00000529828 BTBD11A6QL63 1104 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 GNAT3A8MTJ3 354 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 EPS15P42566 896 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 LTBP1Q14766 1721 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 PNMA8AQ86V59 439 aaPredicted RBP4.75□□□□□ -1.65
PTPRC-213ENST00000529828 NUTM1Q86Y26 1132 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 ABCC12Q96J65 1359 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 GPR101Q96P66 508 aaPredicted RBP4.75□□□□□ -1.65
PTPRC-213ENST00000529828 HS3ST6Q96QI5 342 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 BEGAINQ9BUH8 593 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 KRTAP3-3Q9BYR6 98 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 KRTAP3-2Q9BYR7 98 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 ARFGEF2Q9Y6D5 1785 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 FZD9O00144 591 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 GTF2E1P29083 439 aaPredicted RBP4.75□□□□□ -1.65
PTPRC-213ENST00000529828 LMOD1P29536 600 aaPredicted RBP4.75□□□□□ -1.65
PTPRC-213ENST00000529828 HLFQ16534 295 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 C3orf67Q6ZVT6 689 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 RTKN2Q8IZC4 609 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 GPC2Q8N158 579 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 NGEFQ8N5V2 710 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 JDP2Q8WYK2 163 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 TEX13AQ9BXU3 409 aaPredicted RBP4.75□□□□□ -1.65
PTPRC-213ENST00000529828 MCOLN1Q9GZU1 580 aa4.75□□□□□ -1.65
PTPRC-213ENST00000529828 NBPF26B4DH59 902 aa4.74□□□□□ -1.65
PTPRC-213ENST00000529828 SCNN1DP51172 638 aa4.74□□□□□ -1.65
PTPRC-213ENST00000529828 EIF6P56537 245 aaKnown RBP4.74□□□□□ -1.65
PTPRC-213ENST00000529828 CST9Q5W186 159 aa4.74□□□□□ -1.65
PTPRC-213ENST00000529828 NBPF10Q6P3W6 841 aaKnown RBP4.74□□□□□ -1.65
PTPRC-213ENST00000529828 MCM10Q7L590 875 aa4.74□□□□□ -1.65
PTPRC-213ENST00000529828 LARGE2Q8N3Y3 721 aa4.74□□□□□ -1.65
PTPRC-213ENST00000529828 NBPF15Q8N660 670 aa4.74□□□□□ -1.65
PTPRC-213ENST00000529828 GAS2L2Q8NHY3 880 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms