RNA–Protein interactions for RNA: ENST00000529545.1

VPS11-203, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 576 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-203ENST00000529545 JDP2Q8WYK2 163 aa12.05□□□□□ -0.48
VPS11-203ENST00000529545 TSPYL2Q9H2G4 693 aaPredicted RBP12.05□□□□□ -0.48
VPS11-203ENST00000529545 ABT1Q9ULW3 272 aaKnown RBP12.05□□□□□ -0.48
VPS11-203ENST00000529545 ZNF541Q9H0D2 1346 aa12.05□□□□□ -0.48
VPS11-203ENST00000529545 KLRG2A4D1S0 409 aaPredicted RBP12.04□□□□□ -0.48
VPS11-203ENST00000529545 SNRPA1P09661 255 aaKnown RBP12.04□□□□□ -0.48
VPS11-203ENST00000529545 IARSP41252 1262 aaKnown RBP12.04□□□□□ -0.48
VPS11-203ENST00000529545 MAP1SQ66K74 1059 aaPredicted RBP12.04□□□□□ -0.48
VPS11-203ENST00000529545 GPC2Q8N158 579 aa12.04□□□□□ -0.48
VPS11-203ENST00000529545 SYNE4Q8N205 404 aa12.04□□□□□ -0.48
VPS11-203ENST00000529545 PHF12Q96QT6 1004 aa12.04□□□□□ -0.48
VPS11-203ENST00000529545 BEGAINQ9BUH8 593 aa12.04□□□□□ -0.48
VPS11-203ENST00000529545 NIP7Q9Y221 180 aaKnown RBP eCLIP12.04□□□□□ -0.48
VPS11-203ENST00000529545 USP16Q9Y5T5 823 aa12.04□□□□□ -0.48
VPS11-203ENST00000529545 RNF123Q5XPI4 1314 aa12.04□□□□□ -0.48
VPS11-203ENST00000529545 WDR33Q9C0J8 1336 aaKnown RBP12.04□□□□□ -0.48
VPS11-203ENST00000529545 CEMIPQ8WUJ3 1361 aa12.04□□□□□ -0.48
VPS11-203ENST00000529545 FAM177BA6PVY3 158 aa12.03□□□□□ -0.48
VPS11-203ENST00000529545 RGL2O15211 777 aa12.03□□□□□ -0.48
VPS11-203ENST00000529545 KCNQ3O43525 872 aa12.03□□□□□ -0.48
VPS11-203ENST00000529545 LMOD1P29536 600 aaPredicted RBP12.03□□□□□ -0.48
VPS11-203ENST00000529545 PIP4K2AP48426 406 aaPredicted RBP12.03□□□□□ -0.48
VPS11-203ENST00000529545 EIF6P56537 245 aaKnown RBP12.03□□□□□ -0.48
VPS11-203ENST00000529545 CNGB1Q14028 1251 aaPredicted RBP12.03□□□□□ -0.48
VPS11-203ENST00000529545 RTF1Q92541 710 aaKnown RBP12.03□□□□□ -0.48
VPS11-203ENST00000529545 KIF7Q2M1P5 1343 aa12.03□□□□□ -0.48
VPS11-203ENST00000529545 FZD9O00144 591 aa12.02□□□□□ -0.49
VPS11-203ENST00000529545 HSPA8P11142 646 aaKnown RBP12.02□□□□□ -0.49
VPS11-203ENST00000529545 CC2D2BQ6DHV5 1058 aa12.02□□□□□ -0.49
VPS11-203ENST00000529545 PAXIP1Q6ZW49 1069 aaPredicted RBP12.02□□□□□ -0.49
VPS11-203ENST00000529545 ABHD8Q96I13 439 aa12.02□□□□□ -0.49
VPS11-203ENST00000529545 CFAP53Q96M91 514 aa12.02□□□□□ -0.49
VPS11-203ENST00000529545 GJA3Q9Y6H8 435 aa12.02□□□□□ -0.49
VPS11-203ENST00000529545 ADAMTSL1Q8N6G6 1762 aa12.01□□□□□ -0.49
VPS11-203ENST00000529545 PER1O15534 1290 aaPredicted RBP12.01□□□□□ -0.49
VPS11-203ENST00000529545 PRKAR2BP31323 418 aa12.01□□□□□ -0.49
VPS11-203ENST00000529545 ECE1P42892 770 aa12.01□□□□□ -0.49
VPS11-203ENST00000529545 OLFM4Q6UX06 510 aa12.01□□□□□ -0.49
VPS11-203ENST00000529545 RASEFQ8IZ41 740 aa12.01□□□□□ -0.49
VPS11-203ENST00000529545 PSMD1Q99460 953 aa12.01□□□□□ -0.49
VPS11-203ENST00000529545 NUDCQ9Y266 331 aa12.01□□□□□ -0.49
VPS11-203ENST00000529545 COL3A1P02461 1466 aaPredicted RBP12.01□□□□□ -0.49
VPS11-203ENST00000529545 GRIPAP1Q4V328 841 aa12□□□□□ -0.49
VPS11-203ENST00000529545 PHACTR3Q96KR7 559 aa12□□□□□ -0.49
VPS11-203ENST00000529545 DCBLD2Q96PD2 775 aa12□□□□□ -0.49
VPS11-203ENST00000529545 NYXQ9GZU5 481 aa12□□□□□ -0.49
VPS11-203ENST00000529545 DDX21Q9NR30 783 aaKnown RBP eCLIP12□□□□□ -0.49
VPS11-203ENST00000529545 PRAMEF22A3QJZ6 481 aa11.99□□□□□ -0.49
VPS11-203ENST00000529545 NUBP1P53384 320 aa11.99□□□□□ -0.49
VPS11-203ENST00000529545 GRM1Q13255 1194 aa11.99□□□□□ -0.49
VPS11-203ENST00000529545 FAM161AQ3B820 660 aa11.99□□□□□ -0.49
VPS11-203ENST00000529545 RPGRQ92834 1020 aaKnown RBP11.99□□□□□ -0.49
VPS11-203ENST00000529545 CAPNS2Q96L46 248 aa11.99□□□□□ -0.49
VPS11-203ENST00000529545 TMX4Q9H1E5 349 aaPredicted RBP11.99□□□□□ -0.49
VPS11-203ENST00000529545 NPC1L1Q9UHC9 1359 aa11.99□□□□□ -0.49
VPS11-203ENST00000529545 CCDC85CA6NKD9 419 aa11.98□□□□□ -0.49
VPS11-203ENST00000529545 NBPF26B4DH59 902 aa11.98□□□□□ -0.49
VPS11-203ENST00000529545 GALR2O43603 387 aaPredicted RBP11.98□□□□□ -0.49
VPS11-203ENST00000529545 SLC34A2O95436 690 aa11.98□□□□□ -0.49
VPS11-203ENST00000529545 NBPF10Q6P3W6 841 aaKnown RBP11.98□□□□□ -0.49
VPS11-203ENST00000529545 LARGE2Q8N3Y3 721 aa11.98□□□□□ -0.49
VPS11-203ENST00000529545 NBPF15Q8N660 670 aa11.98□□□□□ -0.49
VPS11-203ENST00000529545 CCER1Q8TC90 406 aaPredicted RBP11.98□□□□□ -0.49
VPS11-203ENST00000529545 FAM212AQ96EL1 285 aa11.98□□□□□ -0.49
VPS11-203ENST00000529545 GPR101Q96P66 508 aaPredicted RBP11.98□□□□□ -0.49
VPS11-203ENST00000529545 RSPH6AQ9H0K4 717 aa11.98□□□□□ -0.49
VPS11-203ENST00000529545 MLLT1Q03111 559 aaPredicted RBP11.97□□□□□ -0.49
VPS11-203ENST00000529545 HLFQ16534 295 aa11.97□□□□□ -0.49
VPS11-203ENST00000529545 USP50Q70EL3 339 aaPredicted RBP11.97□□□□□ -0.49
VPS11-203ENST00000529545 MCM10Q7L590 875 aa11.97□□□□□ -0.49
VPS11-203ENST00000529545 ERVV-1B6SEH8 477 aa11.96□□□□□ -0.49
VPS11-203ENST00000529545 HTATSF1O43719 755 aaKnown RBP11.96□□□□□ -0.49
VPS11-203ENST00000529545 U2AF1L5P0DN76 240 aaPredicted RBP11.96□□□□□ -0.49
VPS11-203ENST00000529545 U2AF1Q01081 240 aaKnown RBP eCLIP11.96□□□□□ -0.49
VPS11-203ENST00000529545 TAF7Q15545 349 aaPredicted RBP11.96□□□□□ -0.49
VPS11-203ENST00000529545 CRY2Q49AN0 593 aa11.96□□□□□ -0.49
VPS11-203ENST00000529545 KIF6Q6ZMV9 814 aa11.96□□□□□ -0.49
VPS11-203ENST00000529545 NUTM1Q86Y26 1132 aa11.96□□□□□ -0.49
VPS11-203ENST00000529545 NIM1KQ8IY84 436 aa11.96□□□□□ -0.49
VPS11-203ENST00000529545 NGEFQ8N5V2 710 aa11.96□□□□□ -0.49
VPS11-203ENST00000529545 RBM17Q96I25 401 aaKnown RBP11.96□□□□□ -0.49
VPS11-203ENST00000529545 TRPM7Q96QT4 1865 aa11.95□□□□□ -0.5
VPS11-203ENST00000529545 NEFMP07197 916 aa11.95□□□□□ -0.5
VPS11-203ENST00000529545 HOXA10P31260 410 aaPredicted RBP11.95□□□□□ -0.5
VPS11-203ENST00000529545 MAP2K2P36507 400 aa11.95□□□□□ -0.5
VPS11-203ENST00000529545 EPS15P42566 896 aa11.95□□□□□ -0.5
VPS11-203ENST00000529545 CYP4F22Q6NT55 531 aa11.95□□□□□ -0.5
VPS11-203ENST00000529545 TCERG1O14776 1098 aaKnown RBP11.94□□□□□ -0.5
VPS11-203ENST00000529545 PPEF1O14829 653 aaPredicted RBP11.94□□□□□ -0.5
VPS11-203ENST00000529545 CA12O43570 354 aa11.94□□□□□ -0.5
VPS11-203ENST00000529545 SCNN1DP51172 638 aa11.94□□□□□ -0.5
VPS11-203ENST00000529545 DCTN1Q14203 1278 aa11.94□□□□□ -0.5
VPS11-203ENST00000529545 CRAMP1Q96RY5 1269 aa11.94□□□□□ -0.5
VPS11-203ENST00000529545 TLL2Q9Y6L7 1015 aa11.94□□□□□ -0.5
VPS11-203ENST00000529545 ABCC12Q96J65 1359 aa11.93□□□□□ -0.5
VPS11-203ENST00000529545 THSD7BQ9C0I4 1608 aa11.93□□□□□ -0.5
VPS11-203ENST00000529545 NUP98P52948 1817 aa11.93□□□□□ -0.5
VPS11-203ENST00000529545 MAP3K15Q6ZN16 1313 aa11.93□□□□□ -0.5
VPS11-203ENST00000529545 LAMB4A4D0S4 1761 aa11.93□□□□□ -0.5
VPS11-203ENST00000529545 TRAF5O00463 557 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms