RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 IGKV5-2P06315 115 aa17.81■□□□□ 0.44
USF1-209ENST00000529476 NEXNQ0ZGT2 675 aa17.81■□□□□ 0.44
USF1-209ENST00000529476 PARP10Q53GL7 1025 aa17.81■□□□□ 0.44
USF1-209ENST00000529476 CCDC24Q8N4L8 307 aa17.81■□□□□ 0.44
USF1-209ENST00000529476 CD2APQ9Y5K6 639 aa17.81■□□□□ 0.44
USF1-209ENST00000529476 KIF13BQ9NQT8 1826 aa17.8■□□□□ 0.44
USF1-209ENST00000529476 TRIM28Q13263 835 aaKnown RBP17.8■□□□□ 0.44
USF1-209ENST00000529476 CWF19L2Q2TBE0 894 aaKnown RBP17.8■□□□□ 0.44
USF1-209ENST00000529476 PRR5LQ6MZQ0 368 aa17.8■□□□□ 0.44
USF1-209ENST00000529476 SLC4A10Q6U841 1118 aa17.8■□□□□ 0.44
USF1-209ENST00000529476 CNBD1Q8NA66 436 aa17.8■□□□□ 0.44
USF1-209ENST00000529476 NEURL1BA8MQ27 555 aa17.79■□□□□ 0.44
USF1-209ENST00000529476 NPHP1O15259 732 aa17.79■□□□□ 0.44
USF1-209ENST00000529476 NTSR2O95665 410 aa17.79■□□□□ 0.44
USF1-209ENST00000529476 BEND3Q5T5X7 828 aa17.79■□□□□ 0.44
USF1-209ENST00000529476 TPTE2Q6XPS3 522 aa17.79■□□□□ 0.44
USF1-209ENST00000529476 PPP1R42Q7Z4L9 355 aa17.79■□□□□ 0.44
USF1-209ENST00000529476 NUTM1Q86Y26 1132 aa17.79■□□□□ 0.44
USF1-209ENST00000529476 ARHGAP45Q92619 1136 aa17.79■□□□□ 0.44
USF1-209ENST00000529476 UTP14AQ9BVJ6 771 aaKnown RBP17.79■□□□□ 0.44
USF1-209ENST00000529476 API5Q9BZZ5 524 aaKnown RBP17.79■□□□□ 0.44
USF1-209ENST00000529476 WWC3Q9ULE0 1092 aa17.79■□□□□ 0.44
USF1-209ENST00000529476 ANKRD31Q8N7Z5 1873 aa17.79■□□□□ 0.44
USF1-209ENST00000529476 C10orf71Q711Q0 1435 aa17.79■□□□□ 0.44
USF1-209ENST00000529476 IBTKQ9P2D0 1353 aaPredicted RBP17.79■□□□□ 0.44
USF1-209ENST00000529476 IPO8O15397 1037 aaKnown RBP17.78■□□□□ 0.44
USF1-209ENST00000529476 CCDC191Q8NCU4 936 aa17.78■□□□□ 0.44
USF1-209ENST00000529476 LINS1Q8NG48 757 aa17.78■□□□□ 0.44
USF1-209ENST00000529476 NYXQ9GZU5 481 aa17.78■□□□□ 0.44
USF1-209ENST00000529476 CWC25Q9NXE8 425 aaPredicted RBP17.78■□□□□ 0.44
USF1-209ENST00000529476 TNNQ9UQP3 1299 aa17.78■□□□□ 0.44
USF1-209ENST00000529476 N4BP2Q86UW6 1770 aaPredicted RBP17.78■□□□□ 0.44
USF1-209ENST00000529476 TRIM27P14373 513 aa17.77■□□□□ 0.44
USF1-209ENST00000529476 GTF2E1P29083 439 aaPredicted RBP17.77■□□□□ 0.44
USF1-209ENST00000529476 APLP1P51693 650 aa17.77■□□□□ 0.44
USF1-209ENST00000529476 ERFEQ4G0M1 354 aa17.77■□□□□ 0.44
USF1-209ENST00000529476 ZKSCAN2Q63HK3 967 aa17.77■□□□□ 0.44
USF1-209ENST00000529476 ATF7IPQ6VMQ6 1270 aa17.77■□□□□ 0.44
USF1-209ENST00000529476 SYNE4Q8N205 404 aa17.77■□□□□ 0.44
USF1-209ENST00000529476 TRMT112Q9UI30 125 aaKnown RBP17.77■□□□□ 0.44
USF1-209ENST00000529476 ABCC12Q96J65 1359 aa17.77■□□□□ 0.43
USF1-209ENST00000529476 PXDNLA1KZ92 1463 aa17.76■□□□□ 0.43
USF1-209ENST00000529476 ST5P78524 1137 aa17.76■□□□□ 0.43
USF1-209ENST00000529476 TNRC6CQ9HCJ0 1690 aaKnown RBP17.75■□□□□ 0.43
USF1-209ENST00000529476 GCKRQ14397 625 aa17.75■□□□□ 0.43
USF1-209ENST00000529476 RTL5Q5HYW3 569 aaPredicted RBP17.75■□□□□ 0.43
USF1-209ENST00000529476 COL13A1Q5TAT6 717 aaPredicted RBP17.75■□□□□ 0.43
USF1-209ENST00000529476 JARID2Q92833 1246 aaPredicted RBP17.75■□□□□ 0.43
USF1-209ENST00000529476 CLUAP1Q96AJ1 413 aa17.75■□□□□ 0.43
USF1-209ENST00000529476 FAM89AQ96GI7 184 aa17.75■□□□□ 0.43
USF1-209ENST00000529476 SRCIN1Q9C0H9 1055 aa17.75■□□□□ 0.43
USF1-209ENST00000529476 DDX60Q8IY21 1712 aaKnown RBP17.75■□□□□ 0.43
USF1-209ENST00000529476 KIAA1551Q9HCM1 1747 aa17.75■□□□□ 0.43
USF1-209ENST00000529476 ABCC4O15439 1325 aa17.74■□□□□ 0.43
USF1-209ENST00000529476 SH3TC1Q8TE82 1336 aa17.74■□□□□ 0.43
USF1-209ENST00000529476 RNF123Q5XPI4 1314 aa17.73■□□□□ 0.43
USF1-209ENST00000529476 PLIN1O60240 522 aa17.73■□□□□ 0.43
USF1-209ENST00000529476 CAPN15O75808 1086 aa17.73■□□□□ 0.43
USF1-209ENST00000529476 ALDH1L1O75891 902 aa17.73■□□□□ 0.43
USF1-209ENST00000529476 PCCAP05165 728 aaPredicted RBP17.73■□□□□ 0.43
USF1-209ENST00000529476 ZBTB38Q8NAP3 1195 aaPredicted RBP17.73■□□□□ 0.43
USF1-209ENST00000529476 BRIP1Q9BX63 1249 aa17.73■□□□□ 0.43
USF1-209ENST00000529476 LAMB2P55268 1798 aa17.73■□□□□ 0.43
USF1-209ENST00000529476 COL11A2P13942 1736 aaPredicted RBP17.72■□□□□ 0.43
USF1-209ENST00000529476 HCLS1P14317 486 aaPredicted RBP17.72■□□□□ 0.43
USF1-209ENST00000529476 CCT4P50991 539 aaKnown RBP17.72■□□□□ 0.43
USF1-209ENST00000529476 SLC10A5Q5PT55 438 aa17.72■□□□□ 0.43
USF1-209ENST00000529476 H7C1W4 665 aa17.71■□□□□ 0.43
USF1-209ENST00000529476 CHRNA5P30532 468 aa17.71■□□□□ 0.43
USF1-209ENST00000529476 UBE3BQ7Z3V4 1068 aa17.71■□□□□ 0.43
USF1-209ENST00000529476 DZIP1LQ8IYY4 767 aaKnown RBP17.71■□□□□ 0.43
USF1-209ENST00000529476 RIC1Q4ADV7 1423 aa17.71■□□□□ 0.43
USF1-209ENST00000529476 IRS4O14654 1257 aaPredicted RBP17.7■□□□□ 0.42
USF1-209ENST00000529476 RLBP1P12271 317 aa17.7■□□□□ 0.42
USF1-209ENST00000529476 DPEP1P16444 411 aa17.7■□□□□ 0.42
USF1-209ENST00000529476 PDE6BP35913 854 aa17.7■□□□□ 0.42
USF1-209ENST00000529476 INTS3Q68E01 1043 aaKnown RBP17.7■□□□□ 0.42
USF1-209ENST00000529476 C3orf67Q6ZVT6 689 aa17.7■□□□□ 0.42
USF1-209ENST00000529476 TMEM57Q8N5G2 664 aa17.7■□□□□ 0.42
USF1-209ENST00000529476 DLEC1Q9Y238 1755 aa17.7■□□□□ 0.42
USF1-209ENST00000529476 CDHR2Q9BYE9 1310 aa17.7■□□□□ 0.42
USF1-209ENST00000529476 A0A0G2JLW4 131 aa17.69■□□□□ 0.42
USF1-209ENST00000529476 GRM8O00222 908 aa17.69■□□□□ 0.42
USF1-209ENST00000529476 TOMM70O94826 608 aa17.69■□□□□ 0.42
USF1-209ENST00000529476 CASP7P55210 303 aa17.69■□□□□ 0.42
USF1-209ENST00000529476 TGFB2P61812 414 aa17.69■□□□□ 0.42
USF1-209ENST00000529476 C2CD5Q86YS7 1000 aa17.69■□□□□ 0.42
USF1-209ENST00000529476 FTSJ3Q8IY81 847 aaKnown RBP17.69■□□□□ 0.42
USF1-209ENST00000529476 C9orf78Q9NZ63 289 aaPredicted RBP17.69■□□□□ 0.42
USF1-209ENST00000529476 KLRG2A4D1S0 409 aaPredicted RBP17.68■□□□□ 0.42
USF1-209ENST00000529476 PANK1Q8TE04 598 aa17.68■□□□□ 0.42
USF1-209ENST00000529476 MYH3P11055 1940 aa17.68■□□□□ 0.42
USF1-209ENST00000529476 BRCA1P38398 1863 aaKnown RBP17.67■□□□□ 0.42
USF1-209ENST00000529476 H0YIN7 160 aa17.67■□□□□ 0.42
USF1-209ENST00000529476 NBPF7P0C2Y1 421 aaPredicted RBP17.67■□□□□ 0.42
USF1-209ENST00000529476 KCNA3P22001 575 aa17.67■□□□□ 0.42
USF1-209ENST00000529476 HTRA3P83110 453 aa17.67■□□□□ 0.42
USF1-209ENST00000529476 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.67■□□□□ 0.42
USF1-209ENST00000529476 NLRP3Q96P20 1036 aa17.67■□□□□ 0.42
USF1-209ENST00000529476 USP44Q9H0E7 712 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms