RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, humanhuman

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7-208ENST00000528280 CC2D2BQ6DHV5 1058 aa12.43□□□□□ -0.42
CHD7-208ENST00000528280 PRPF40BQ6NWY9 871 aaKnown RBP12.43□□□□□ -0.42
CHD7-208ENST00000528280 ANKRD13DQ6ZTN6 518 aa12.43□□□□□ -0.42
CHD7-208ENST00000528280 LRP10Q7Z4F1 713 aa12.43□□□□□ -0.42
CHD7-208ENST00000528280 RTKN2Q8IZC4 609 aa12.43□□□□□ -0.42
CHD7-208ENST00000528280 XAGE3Q8WTP9 111 aa12.43□□□□□ -0.42
CHD7-208ENST00000528280 NLRP3Q96P20 1036 aa12.43□□□□□ -0.42
CHD7-208ENST00000528280 UTP14AQ9BVJ6 771 aaKnown RBP12.43□□□□□ -0.42
CHD7-208ENST00000528280 TMX4Q9H1E5 349 aaPredicted RBP12.43□□□□□ -0.42
CHD7-208ENST00000528280 LTBP3Q9NS15 1303 aa12.42□□□□□ -0.42
CHD7-208ENST00000528280 GPTP24298 496 aa12.42□□□□□ -0.42
CHD7-208ENST00000528280 SUSD4Q5VX71 490 aa12.42□□□□□ -0.42
CHD7-208ENST00000528280 PLBD2Q8NHP8 589 aa12.42□□□□□ -0.42
CHD7-208ENST00000528280 NECTIN2Q92692 538 aa12.42□□□□□ -0.42
CHD7-208ENST00000528280 RPGRQ92834 1020 aaKnown RBP12.42□□□□□ -0.42
CHD7-208ENST00000528280 RBM17Q96I25 401 aaKnown RBP12.42□□□□□ -0.42
CHD7-208ENST00000528280 FOXN1O15353 648 aa12.41□□□□□ -0.42
CHD7-208ENST00000528280 HOXA10P31260 410 aaPredicted RBP12.41□□□□□ -0.42
CHD7-208ENST00000528280 CRY2Q49AN0 593 aa12.41□□□□□ -0.42
CHD7-208ENST00000528280 ERFEQ4G0M1 354 aa12.41□□□□□ -0.42
CHD7-208ENST00000528280 CCDC93Q567U6 631 aa12.41□□□□□ -0.42
CHD7-208ENST00000528280 CCDC30Q5VVM6 783 aa12.41□□□□□ -0.42
CHD7-208ENST00000528280 C7orf43Q8WVR3 580 aa12.41□□□□□ -0.42
CHD7-208ENST00000528280 TAOK3Q9H2K8 898 aa12.41□□□□□ -0.42
CHD7-208ENST00000528280 CHPF2Q9P2E5 772 aa12.41□□□□□ -0.42
CHD7-208ENST00000528280 ZNF219Q9P2Y4 722 aaPredicted RBP12.41□□□□□ -0.42
CHD7-208ENST00000528280 DLEC1Q9Y238 1755 aa12.41□□□□□ -0.42
CHD7-208ENST00000528280 IL16Q14005 1332 aa12.4□□□□□ -0.42
CHD7-208ENST00000528280 GLTPD2A6NH11 291 aa12.4□□□□□ -0.42
CHD7-208ENST00000528280 NFKBIEO00221 500 aa12.4□□□□□ -0.42
CHD7-208ENST00000528280 HSP90B1P14625 803 aaKnown RBP12.4□□□□□ -0.42
CHD7-208ENST00000528280 VEGFAP15692 232 aaPredicted RBP12.4□□□□□ -0.42
CHD7-208ENST00000528280 KRT24Q2M2I5 525 aa12.4□□□□□ -0.42
CHD7-208ENST00000528280 PROSER3Q2NL68 480 aa12.4□□□□□ -0.42
CHD7-208ENST00000528280 CCDC184Q52MB2 194 aa12.4□□□□□ -0.42
CHD7-208ENST00000528280 NUTM1Q86Y26 1132 aa12.4□□□□□ -0.42
CHD7-208ENST00000528280 WWC1Q8IX03 1113 aa12.4□□□□□ -0.42
CHD7-208ENST00000528280 CRAMP1Q96RY5 1269 aa12.4□□□□□ -0.42
CHD7-208ENST00000528280 NUP98P52948 1817 aa12.39□□□□□ -0.43
CHD7-208ENST00000528280 RIC1Q4ADV7 1423 aa12.39□□□□□ -0.43
CHD7-208ENST00000528280 NTSR2O95665 410 aa12.39□□□□□ -0.43
CHD7-208ENST00000528280 DDX58O95786 925 aaKnown RBP12.39□□□□□ -0.43
CHD7-208ENST00000528280 ANXA1P04083 346 aa12.39□□□□□ -0.43
CHD7-208ENST00000528280 RASSF7Q02833 373 aa12.39□□□□□ -0.43
CHD7-208ENST00000528280 TRIM28Q13263 835 aaKnown RBP12.39□□□□□ -0.43
CHD7-208ENST00000528280 NLRP10Q86W26 655 aa12.39□□□□□ -0.43
CHD7-208ENST00000528280 WDR63Q8IWG1 891 aa12.39□□□□□ -0.43
CHD7-208ENST00000528280 ANKRD31Q8N7Z5 1873 aa12.39□□□□□ -0.43
CHD7-208ENST00000528280 UBN2Q6ZU65 1347 aa12.38□□□□□ -0.43
CHD7-208ENST00000528280 BBOX1O75936 387 aa12.38□□□□□ -0.43
CHD7-208ENST00000528280 RGS19P49795 217 aa12.38□□□□□ -0.43
CHD7-208ENST00000528280 FKBP4Q02790 459 aaKnown RBP eCLIP12.38□□□□□ -0.43
CHD7-208ENST00000528280 GOLGA2Q08379 1002 aa12.38□□□□□ -0.43
CHD7-208ENST00000528280 RIC3Q7Z5B4 369 aa12.38□□□□□ -0.43
CHD7-208ENST00000528280 TRMT112Q9UI30 125 aaKnown RBP12.38□□□□□ -0.43
CHD7-208ENST00000528280 SH3TC1Q8TE82 1336 aa12.37□□□□□ -0.43
CHD7-208ENST00000528280 ELL2O00472 640 aaPredicted RBP12.37□□□□□ -0.43
CHD7-208ENST00000528280 CTCFP49711 727 aaPredicted RBP12.37□□□□□ -0.43
CHD7-208ENST00000528280 MLLT1Q03111 559 aaPredicted RBP12.37□□□□□ -0.43
CHD7-208ENST00000528280 ABHD8Q96I13 439 aa12.37□□□□□ -0.43
CHD7-208ENST00000528280 STK31Q9BXU1 1019 aa12.37□□□□□ -0.43
CHD7-208ENST00000528280 C8orf58Q8NAV2 365 aa12.36□□□□□ -0.43
CHD7-208ENST00000528280 PSMD1Q99460 953 aa12.36□□□□□ -0.43
CHD7-208ENST00000528280 VPS33BQ9H267 617 aa12.36□□□□□ -0.43
CHD7-208ENST00000528280 CREBZFQ9NS37 354 aa12.36□□□□□ -0.43
CHD7-208ENST00000528280 MKRN1Q9UHC7 482 aaKnown RBP12.36□□□□□ -0.43
CHD7-208ENST00000528280 SLX4Q8IY92 1834 aa12.35□□□□□ -0.43
CHD7-208ENST00000528280 TIAM2Q8IVF5 1701 aa12.35□□□□□ -0.43
CHD7-208ENST00000528280 DDX46Q7L014 1031 aaKnown RBP12.35□□□□□ -0.43
CHD7-208ENST00000528280 TMC4Q7Z404 712 aa12.35□□□□□ -0.43
CHD7-208ENST00000528280 SYNE4Q8N205 404 aa12.35□□□□□ -0.43
CHD7-208ENST00000528280 ISCA1Q9BUE6 129 aa12.35□□□□□ -0.43
CHD7-208ENST00000528280 DICER1Q9UPY3 1922 aaKnown RBP12.35□□□□□ -0.43
CHD7-208ENST00000528280 FAM9BQ8IZU0 186 aa12.34□□□□□ -0.43
CHD7-208ENST00000528280 SUPT20HQ8NEM7 779 aa12.34□□□□□ -0.43
CHD7-208ENST00000528280 JDP2Q8WYK2 163 aa12.34□□□□□ -0.43
CHD7-208ENST00000528280 TNRC18O15417 2968 aaPredicted RBP12.33□□□□□ -0.43
CHD7-208ENST00000528280 ABCC12Q96J65 1359 aa12.33□□□□□ -0.44
CHD7-208ENST00000528280 POTECB2RU33 542 aa12.33□□□□□ -0.44
CHD7-208ENST00000528280 PPEF1O14829 653 aaPredicted RBP12.33□□□□□ -0.44
CHD7-208ENST00000528280 IARSP41252 1262 aaKnown RBP12.33□□□□□ -0.44
CHD7-208ENST00000528280 TWISTNBQ3B726 338 aaPredicted RBP12.33□□□□□ -0.44
CHD7-208ENST00000528280 SP8Q8IXZ3 490 aa12.33□□□□□ -0.44
CHD7-208ENST00000528280 CCDC191Q8NCU4 936 aa12.33□□□□□ -0.44
CHD7-208ENST00000528280 AIDAQ96BJ3 306 aa12.33□□□□□ -0.44
CHD7-208ENST00000528280 MYH16Q9H6N6 1097 aa12.33□□□□□ -0.44
CHD7-208ENST00000528280 ATP6V0A2Q9Y487 856 aa12.33□□□□□ -0.44
CHD7-208ENST00000528280 FER1L6Q2WGJ9 1857 aa12.33□□□□□ -0.44
CHD7-208ENST00000528280 COL11A2P13942 1736 aaPredicted RBP12.32□□□□□ -0.44
CHD7-208ENST00000528280 IQCA1LA6NCM1 817 aa12.32□□□□□ -0.44
CHD7-208ENST00000528280 ATP5J2-PTCD1G3V325 749 aa12.32□□□□□ -0.44
CHD7-208ENST00000528280 HCLS1P14317 486 aaPredicted RBP12.32□□□□□ -0.44
CHD7-208ENST00000528280 LBX1P52954 281 aa12.32□□□□□ -0.44
CHD7-208ENST00000528280 NEXNQ0ZGT2 675 aa12.32□□□□□ -0.44
CHD7-208ENST00000528280 SF3B3Q15393 1217 aaKnown RBP12.32□□□□□ -0.44
CHD7-208ENST00000528280 KSR2Q6VAB6 950 aa12.32□□□□□ -0.44
CHD7-208ENST00000528280 ZBTB38Q8NAP3 1195 aaPredicted RBP12.32□□□□□ -0.44
CHD7-208ENST00000528280 TSR2Q969E8 191 aaKnown RBP12.32□□□□□ -0.44
CHD7-208ENST00000528280 PHAXQ9H814 394 aaKnown RBP12.32□□□□□ -0.44
CHD7-208ENST00000528280 ZNF277Q9NRM2 450 aaPredicted RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms