RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 RNF217Q8TC41 542 aa6.97□□□□□ -1.29
CD44-225ENST00000527326 PCMTD1Q96MG8 357 aaPredicted RBP6.97□□□□□ -1.29
CD44-225ENST00000527326 FAM210AQ96ND0 272 aa6.97□□□□□ -1.29
CD44-225ENST00000527326 TACO1Q9BSH4 297 aaKnown RBP6.97□□□□□ -1.29
CD44-225ENST00000527326 SUFUQ9UMX1 484 aa6.97□□□□□ -1.29
CD44-225ENST00000527326 KANK1Q14678 1352 aa6.96□□□□□ -1.29
CD44-225ENST00000527326 KIF27Q86VH2 1401 aa6.96□□□□□ -1.3
CD44-225ENST00000527326 MYO1CO00159 1063 aa6.96□□□□□ -1.3
CD44-225ENST00000527326 PER1O15534 1290 aaPredicted RBP6.96□□□□□ -1.3
CD44-225ENST00000527326 BAG4O95429 457 aaKnown RBP6.96□□□□□ -1.3
CD44-225ENST00000527326 NUCB2P80303 420 aa6.96□□□□□ -1.3
CD44-225ENST00000527326 AGERQ15109 404 aa6.96□□□□□ -1.3
CD44-225ENST00000527326 TTC31Q49AM3 519 aaPredicted RBP6.96□□□□□ -1.3
CD44-225ENST00000527326 JMYQ8N9B5 988 aa6.96□□□□□ -1.3
CD44-225ENST00000527326 JARID2Q92833 1246 aaPredicted RBP6.96□□□□□ -1.3
CD44-225ENST00000527326 FOXJ1Q92949 421 aa6.96□□□□□ -1.3
CD44-225ENST00000527326 KIF1BPQ96EK5 621 aa6.96□□□□□ -1.3
CD44-225ENST00000527326 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.96□□□□□ -1.3
CD44-225ENST00000527326 KIF13AQ9H1H9 1805 aa6.96□□□□□ -1.3
CD44-225ENST00000527326 E9PCH4 1651 aa6.96□□□□□ -1.3
CD44-225ENST00000527326 ABCA10Q8WWZ4 1543 aa6.96□□□□□ -1.3
CD44-225ENST00000527326 MTUS2Q5JR59 1369 aa6.95□□□□□ -1.3
CD44-225ENST00000527326 SHROOM2Q13796 1616 aa6.95□□□□□ -1.3
CD44-225ENST00000527326 A6NJR5 290 aa6.95□□□□□ -1.3
CD44-225ENST00000527326 TERTO14746 1132 aaKnown RBP6.95□□□□□ -1.3
CD44-225ENST00000527326 MAFGO15525 162 aa6.95□□□□□ -1.3
CD44-225ENST00000527326 MBD3O95983 291 aa6.95□□□□□ -1.3
CD44-225ENST00000527326 F12P00748 615 aaPredicted RBP6.95□□□□□ -1.3
CD44-225ENST00000527326 ANAPC15P60006 121 aa6.95□□□□□ -1.3
CD44-225ENST00000527326 TPM4P67936 248 aa6.95□□□□□ -1.3
CD44-225ENST00000527326 NFX1Q12986 1120 aaKnown RBP6.95□□□□□ -1.3
CD44-225ENST00000527326 GPS2Q13227 327 aa6.95□□□□□ -1.3
CD44-225ENST00000527326 ARID5BQ14865 1188 aa6.95□□□□□ -1.3
CD44-225ENST00000527326 CAVIN1Q6NZI2 390 aaKnown RBP6.95□□□□□ -1.3
CD44-225ENST00000527326 TRIM46Q7Z4K8 759 aa6.95□□□□□ -1.3
CD44-225ENST00000527326 ITFG2Q969R8 447 aa6.95□□□□□ -1.3
CD44-225ENST00000527326 SYAP1Q96A49 352 aaPredicted RBP6.95□□□□□ -1.3
CD44-225ENST00000527326 SGSM3Q96HU1 749 aa6.95□□□□□ -1.3
CD44-225ENST00000527326 POLR3EQ9NVU0 708 aa6.95□□□□□ -1.3
CD44-225ENST00000527326 POLKQ9UBT6 870 aa6.95□□□□□ -1.3
CD44-225ENST00000527326 PAXBP1Q9Y5B6 917 aa6.95□□□□□ -1.3
CD44-225ENST00000527326 MRVI1Q9Y6F6 885 aa6.95□□□□□ -1.3
CD44-225ENST00000527326 GCC2Q8IWJ2 1684 aa6.95□□□□□ -1.3
CD44-225ENST00000527326 NAIPQ13075 1403 aa6.94□□□□□ -1.3
CD44-225ENST00000527326 GRIN2AQ12879 1464 aa6.94□□□□□ -1.3
CD44-225ENST00000527326 TEX14Q8IWB6 1497 aa6.94□□□□□ -1.3
CD44-225ENST00000527326 CCDC189A1A4V9 331 aa6.94□□□□□ -1.3
CD44-225ENST00000527326 KLHL33A6NCF5 533 aa6.94□□□□□ -1.3
CD44-225ENST00000527326 HTATSF1O43719 755 aaKnown RBP6.94□□□□□ -1.3
CD44-225ENST00000527326 LILRB3O75022 631 aa6.94□□□□□ -1.3
CD44-225ENST00000527326 NNTQ13423 1086 aa6.94□□□□□ -1.3
CD44-225ENST00000527326 PDE3AQ14432 1141 aa6.94□□□□□ -1.3
CD44-225ENST00000527326 BMS1Q14692 1282 aaKnown RBP6.94□□□□□ -1.3
CD44-225ENST00000527326 C11orf91Q3C1V1 193 aa6.94□□□□□ -1.3
CD44-225ENST00000527326 SH3D19Q5HYK7 790 aa6.94□□□□□ -1.3
CD44-225ENST00000527326 MCTP2Q6DN12 878 aa6.94□□□□□ -1.3
CD44-225ENST00000527326 MPNDQ8N594 471 aa6.94□□□□□ -1.3
CD44-225ENST00000527326 TBC1D22AQ8WUA7 517 aa6.94□□□□□ -1.3
CD44-225ENST00000527326 TRERF1Q96PN7 1200 aa6.94□□□□□ -1.3
CD44-225ENST00000527326 CEP89Q96ST8 783 aa6.94□□□□□ -1.3
CD44-225ENST00000527326 TSPY26PQ9H489 355 aa6.94□□□□□ -1.3
CD44-225ENST00000527326 V9GYY5 206 aaPredicted RBP6.94□□□□□ -1.3
CD44-225ENST00000527326 EPRSP07814 1512 aaKnown RBP6.94□□□□□ -1.3
CD44-225ENST00000527326 ADAMTS12P58397 1594 aa6.94□□□□□ -1.3
CD44-225ENST00000527326 PARD3Q8TEW0 1356 aa6.94□□□□□ -1.3
CD44-225ENST00000527326 RPRD2Q5VT52 1461 aaKnown RBP6.93□□□□□ -1.3
CD44-225ENST00000527326 FAM177BA6PVY3 158 aa6.93□□□□□ -1.3
CD44-225ENST00000527326 MAGEA9P43362 315 aa6.93□□□□□ -1.3
CD44-225ENST00000527326 SRPK2P78362 688 aaKnown RBP6.93□□□□□ -1.3
CD44-225ENST00000527326 MCM6Q14566 821 aa6.93□□□□□ -1.3
CD44-225ENST00000527326 TUSC1Q2TAM9 212 aa6.93□□□□□ -1.3
CD44-225ENST00000527326 SYT10Q6XYQ8 523 aa6.93□□□□□ -1.3
CD44-225ENST00000527326 SRLQ86TD4 932 aa6.93□□□□□ -1.3
CD44-225ENST00000527326 IQUBQ8NA54 791 aa6.93□□□□□ -1.3
CD44-225ENST00000527326 ATG3Q9NT62 314 aa6.93□□□□□ -1.3
CD44-225ENST00000527326 LMBRD1Q9NUN5 540 aa6.93□□□□□ -1.3
CD44-225ENST00000527326 CEP170Q5SW79 1584 aa6.93□□□□□ -1.3
CD44-225ENST00000527326 BCORL1Q5H9F3 1711 aa6.93□□□□□ -1.3
CD44-225ENST00000527326 PLXNC1O60486 1568 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 KDM5CP41229 1560 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 KIF14Q15058 1648 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 K7ELQ4 463 aaPredicted RBP6.92□□□□□ -1.3
CD44-225ENST00000527326 IGHDP01880 384 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 NEFHP12036 1026 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 SSFA2P28290 1259 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 MAP2K2P36507 400 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 CLK2P49760 499 aaKnown RBP6.92□□□□□ -1.3
CD44-225ENST00000527326 WDR4P57081 412 aaKnown RBP6.92□□□□□ -1.3
CD44-225ENST00000527326 CDCA8Q53HL2 280 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 CC2D2BQ6DHV5 1058 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 BPHLQ86WA6 291 aaPredicted RBP6.92□□□□□ -1.3
CD44-225ENST00000527326 C10orf67Q8IYJ2 551 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 CCDC82Q8N4S0 544 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 PROCA1Q8NCQ7 364 aaPredicted RBP6.92□□□□□ -1.3
CD44-225ENST00000527326 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.92□□□□□ -1.3
CD44-225ENST00000527326 ANKRD20A12PQ8NF67 263 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 HELBQ8NG08 1087 aaPredicted RBP6.92□□□□□ -1.3
CD44-225ENST00000527326 GOLGA5Q8TBA6 731 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 KIAA1524Q8TCG1 905 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 PPM1EQ8WY54 764 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms