RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 WHAMMQ8TF30 809 aa9.03□□□□□ -0.96
CD44-223ENST00000526553 STK17AQ9UEE5 414 aa9.03□□□□□ -0.96
CD44-223ENST00000526553 BCRP11274 1271 aa9.02□□□□□ -0.97
CD44-223ENST00000526553 SCNN1AP37088 669 aa9.02□□□□□ -0.97
CD44-223ENST00000526553 SLCO4C1Q6ZQN7 724 aa9.02□□□□□ -0.97
CD44-223ENST00000526553 TREML1Q86YW5 311 aa9.02□□□□□ -0.97
CD44-223ENST00000526553 ETFBKMTQ8IXQ9 262 aa9.02□□□□□ -0.97
CD44-223ENST00000526553 SVOPQ8N4V2 548 aa9.02□□□□□ -0.97
CD44-223ENST00000526553 STIM2Q9P246 746 aa9.02□□□□□ -0.97
CD44-223ENST00000526553 PRR12Q9ULL5 1215 aa9.02□□□□□ -0.97
CD44-223ENST00000526553 FAM181BA6NEQ2 426 aa9.01□□□□□ -0.97
CD44-223ENST00000526553 ADH6P28332 368 aa9.01□□□□□ -0.97
CD44-223ENST00000526553 MAP3K10Q02779 954 aa9.01□□□□□ -0.97
CD44-223ENST00000526553 SPEM2Q0P670 501 aa9.01□□□□□ -0.97
CD44-223ENST00000526553 ABTB2Q8N961 1025 aa9.01□□□□□ -0.97
CD44-223ENST00000526553 EFCC1Q9HA90 598 aa9.01□□□□□ -0.97
CD44-223ENST00000526553 C11orf16Q9NQ32 467 aa9.01□□□□□ -0.97
CD44-223ENST00000526553 OIP5O43482 229 aa9□□□□□ -0.97
CD44-223ENST00000526553 GRIN2CQ14957 1233 aa9□□□□□ -0.97
CD44-223ENST00000526553 SLC30A3Q99726 388 aa9□□□□□ -0.97
CD44-223ENST00000526553 OPLAHO14841 1288 aa8.99□□□□□ -0.97
CD44-223ENST00000526553 ARHGEF15O94989 841 aa8.99□□□□□ -0.97
CD44-223ENST00000526553 GRNP28799 593 aaKnown RBP8.99□□□□□ -0.97
CD44-223ENST00000526553 NEUROD1Q13562 356 aa8.99□□□□□ -0.97
CD44-223ENST00000526553 FAM26DQ5JW98 314 aa8.99□□□□□ -0.97
CD44-223ENST00000526553 GTF3C2Q8WUA4 911 aaPredicted RBP8.99□□□□□ -0.97
CD44-223ENST00000526553 GGA1Q9UJY5 639 aa8.99□□□□□ -0.97
CD44-223ENST00000526553 SYT9Q86SS6 491 aa8.98□□□□□ -0.97
CD44-223ENST00000526553 ENAMQ9NRM1 1142 aa8.98□□□□□ -0.97
CD44-223ENST00000526553 FAM13BQ9NYF5 915 aa8.98□□□□□ -0.97
CD44-223ENST00000526553 KLF15Q9UIH9 416 aa8.98□□□□□ -0.97
CD44-223ENST00000526553 NEURL1BA8MQ27 555 aa8.97□□□□□ -0.97
CD44-223ENST00000526553 SIN3BO75182 1162 aa8.97□□□□□ -0.97
CD44-223ENST00000526553 ARID4AP29374 1257 aaPredicted RBP8.97□□□□□ -0.97
CD44-223ENST00000526553 GSX2Q9BZM3 304 aa8.97□□□□□ -0.97
CD44-223ENST00000526553 RTCBQ9Y3I0 505 aaKnown RBP8.97□□□□□ -0.97
CD44-223ENST00000526553 DNMT3AQ9Y6K1 912 aaPredicted RBP8.97□□□□□ -0.97
CD44-223ENST00000526553 ZAP70P43403 619 aa8.96□□□□□ -0.98
CD44-223ENST00000526553 PCBP4P57723 403 aaKnown RBP8.96□□□□□ -0.98
CD44-223ENST00000526553 SF3B2Q13435 895 aaKnown RBP8.96□□□□□ -0.98
CD44-223ENST00000526553 CCINQ13939 588 aa8.96□□□□□ -0.98
CD44-223ENST00000526553 FCHSD1Q86WN1 690 aa8.96□□□□□ -0.98
CD44-223ENST00000526553 EGFL7Q9UHF1 273 aa8.96□□□□□ -0.98
CD44-223ENST00000526553 BRD1O95696 1058 aa8.95□□□□□ -0.98
CD44-223ENST00000526553 EGFRP00533 1210 aa8.95□□□□□ -0.98
CD44-223ENST00000526553 EPXP11678 715 aa8.95□□□□□ -0.98
CD44-223ENST00000526553 NPR3P17342 541 aa8.95□□□□□ -0.98
CD44-223ENST00000526553 C1orf229Q6ZS94 237 aaPredicted RBP8.95□□□□□ -0.98
CD44-223ENST00000526553 RGL4Q8IZJ4 473 aa8.95□□□□□ -0.98
CD44-223ENST00000526553 GALNT6Q8NCL4 622 aa8.95□□□□□ -0.98
CD44-223ENST00000526553 EDARADDQ8WWZ3 215 aa8.95□□□□□ -0.98
CD44-223ENST00000526553 TNFRSF25Q93038 417 aa8.95□□□□□ -0.98
CD44-223ENST00000526553 MDFIQ99750 246 aa8.95□□□□□ -0.98
CD44-223ENST00000526553 RAB44Q7Z6P3 723 aaPredicted RBP8.94□□□□□ -0.98
CD44-223ENST00000526553 TXNDC2Q86VQ3 553 aa8.94□□□□□ -0.98
CD44-223ENST00000526553 BHMTQ93088 406 aa8.94□□□□□ -0.98
CD44-223ENST00000526553 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.94□□□□□ -0.98
CD44-223ENST00000526553 KCNMB2Q9Y691 235 aa8.94□□□□□ -0.98
CD44-223ENST00000526553 ADARB2-AS1A8MUL3 147 aa8.93□□□□□ -0.98
CD44-223ENST00000526553 SHISA8B8ZZ34 492 aa8.93□□□□□ -0.98
CD44-223ENST00000526553 ZBTB39O15060 712 aa8.93□□□□□ -0.98
CD44-223ENST00000526553 MPSTP25325 297 aa8.93□□□□□ -0.98
CD44-223ENST00000526553 PIK3R5Q8WYR1 880 aa8.93□□□□□ -0.98
CD44-223ENST00000526553 PNMA5Q96PV4 448 aa8.93□□□□□ -0.98
CD44-223ENST00000526553 ADAMTS8Q9UP79 889 aa8.93□□□□□ -0.98
CD44-223ENST00000526553 USP20Q9Y2K6 914 aa8.93□□□□□ -0.98
CD44-223ENST00000526553 FAM13AO94988 1023 aa8.92□□□□□ -0.98
CD44-223ENST00000526553 ABL1P00519 1130 aa8.92□□□□□ -0.98
CD44-223ENST00000526553 NFKB1P19838 968 aa8.92□□□□□ -0.98
CD44-223ENST00000526553 FKBP4Q02790 459 aaKnown RBP eCLIP8.92□□□□□ -0.98
CD44-223ENST00000526553 MTMR3Q13615 1198 aa8.92□□□□□ -0.98
CD44-223ENST00000526553 NOM1Q5C9Z4 860 aaKnown RBP8.92□□□□□ -0.98
CD44-223ENST00000526553 ALKBH2Q6NS38 261 aa8.92□□□□□ -0.98
CD44-223ENST00000526553 CMTR1Q8N1G2 835 aaKnown RBP8.92□□□□□ -0.98
CD44-223ENST00000526553 NEDD1Q8NHV4 660 aa8.92□□□□□ -0.98
CD44-223ENST00000526553 TRAIPQ9BWF2 469 aa8.92□□□□□ -0.98
CD44-223ENST00000526553 ELOA3CA0A087WX78 387 aaPredicted RBP8.91□□□□□ -0.98
CD44-223ENST00000526553 ELOA3DA6NLF2 546 aaPredicted RBP8.91□□□□□ -0.98
CD44-223ENST00000526553 XYLBO75191 536 aa8.91□□□□□ -0.98
CD44-223ENST00000526553 MAP3K6O95382 1288 aa8.91□□□□□ -0.98
CD44-223ENST00000526553 EIF1AXP47813 144 aaKnown RBP8.91□□□□□ -0.98
CD44-223ENST00000526553 SERPINB4P48594 390 aa8.91□□□□□ -0.98
CD44-223ENST00000526553 ZNF211Q13398 564 aaPredicted RBP8.91□□□□□ -0.98
CD44-223ENST00000526553 ELOA3BQ3SY89 546 aa8.91□□□□□ -0.98
CD44-223ENST00000526553 ELOA3Q8NG57 546 aa8.91□□□□□ -0.98
CD44-223ENST00000526553 CCER1Q8TC90 406 aaPredicted RBP8.91□□□□□ -0.98
CD44-223ENST00000526553 ICMTO60725 284 aa8.9□□□□□ -0.98
CD44-223ENST00000526553 TRIP4Q15650 581 aaPredicted RBP8.9□□□□□ -0.98
CD44-223ENST00000526553 GPR152Q8TDT2 470 aa8.9□□□□□ -0.98
CD44-223ENST00000526553 GNEQ9Y223 722 aaKnown RBP8.9□□□□□ -0.98
CD44-223ENST00000526553 CHSY3Q70JA7 882 aa8.89□□□□□ -0.99
CD44-223ENST00000526553 ATCAYQ86WG3 371 aa8.89□□□□□ -0.99
CD44-223ENST00000526553 BTBD6Q96KE9 485 aa8.89□□□□□ -0.99
CD44-223ENST00000526553 ZFATQ9P243 1243 aa8.89□□□□□ -0.99
CD44-223ENST00000526553 FNDC3AQ9Y2H6 1198 aaKnown RBP8.89□□□□□ -0.99
CD44-223ENST00000526553 UBAP1LF5GYI3 381 aa8.88□□□□□ -0.99
CD44-223ENST00000526553 SASH3O75995 380 aa8.88□□□□□ -0.99
CD44-223ENST00000526553 RPLP1P05386 114 aaKnown RBP8.88□□□□□ -0.99
CD44-223ENST00000526553 RARAP10276 462 aa8.88□□□□□ -0.99
CD44-223ENST00000526553 ALAS2P22557 587 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms