RNA–Protein interactions for RNA: ENST00000521713.1

USP42-207, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 5

Gene USP42, Length 5,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-207ENST00000521713 PIBF1Q8WXW3 757 aa18.84■□□□□ 0.61
USP42-207ENST00000521713 CFAP74Q9C0B2 1584 aa18.84■□□□□ 0.61
USP42-207ENST00000521713 MYO1BO43795 1136 aa18.83■□□□□ 0.61
USP42-207ENST00000521713 SSBP05455 408 aaKnown RBP eCLIP18.83■□□□□ 0.61
USP42-207ENST00000521713 SYCP1Q15431 976 aa18.83■□□□□ 0.61
USP42-207ENST00000521713 CCDC96Q2M329 555 aa18.83■□□□□ 0.61
USP42-207ENST00000521713 MEIS3Q99687 375 aa18.83■□□□□ 0.61
USP42-207ENST00000521713 TFCP2L1Q9NZI6 479 aa18.83■□□□□ 0.61
USP42-207ENST00000521713 TTLL12Q14166 644 aaPredicted RBP18.83■□□□□ 0.61
USP42-207ENST00000521713 CATIPQ7Z7H3 387 aa18.83■□□□□ 0.61
USP42-207ENST00000521713 CABP5Q9NP86 173 aa18.83■□□□□ 0.61
USP42-207ENST00000521713 NPC1L1Q9UHC9 1359 aa18.83■□□□□ 0.6
USP42-207ENST00000521713 HDAC1Q13547 482 aaPredicted RBP18.83■□□□□ 0.6
USP42-207ENST00000521713 TXLNBQ8N3L3 684 aa18.82■□□□□ 0.6
USP42-207ENST00000521713 PLEKHG3A1L390 1219 aa18.82■□□□□ 0.6
USP42-207ENST00000521713 CRNKL1Q9BZJ0 848 aaKnown RBP18.82■□□□□ 0.6
USP42-207ENST00000521713 ANKRD44Q8N8A2 993 aa18.82■□□□□ 0.6
USP42-207ENST00000521713 JARID2Q92833 1246 aaPredicted RBP18.82■□□□□ 0.6
USP42-207ENST00000521713 CGNQ9P2M7 1197 aaKnown RBP18.82■□□□□ 0.6
USP42-207ENST00000521713 ZFYVE27Q5T4F4 411 aa18.82■□□□□ 0.6
USP42-207ENST00000521713 GBP3Q9H0R5 595 aa18.82■□□□□ 0.6
USP42-207ENST00000521713 ZNHIT6Q9NWK9 470 aaKnown RBP18.82■□□□□ 0.6
USP42-207ENST00000521713 DYNC1I1O14576 645 aa18.81■□□□□ 0.6
USP42-207ENST00000521713 POLD1P28340 1107 aa18.81■□□□□ 0.6
USP42-207ENST00000521713 ATP8B2P98198 1209 aa18.81■□□□□ 0.6
USP42-207ENST00000521713 CCDC83Q8IWF9 413 aa18.81■□□□□ 0.6
USP42-207ENST00000521713 PHAXQ9H814 394 aaKnown RBP18.81■□□□□ 0.6
USP42-207ENST00000521713 HMG20BQ9P0W2 317 aa18.81■□□□□ 0.6
USP42-207ENST00000521713 CEP57L1Q8IYX8 460 aa18.81■□□□□ 0.6
USP42-207ENST00000521713 COL17A1Q9UMD9 1497 aaPredicted RBP18.81■□□□□ 0.6
USP42-207ENST00000521713 GOLGA6L10A6NI86 522 aa18.8■□□□□ 0.6
USP42-207ENST00000521713 CUL5Q93034 780 aa18.8■□□□□ 0.6
USP42-207ENST00000521713 C8orf76Q96K31 380 aa18.8■□□□□ 0.6
USP42-207ENST00000521713 LIMCH1Q9UPQ0 1083 aa18.8■□□□□ 0.6
USP42-207ENST00000521713 KIF5BP33176 963 aa18.8■□□□□ 0.6
USP42-207ENST00000521713 HDAC9Q9UKV0 1011 aa18.8■□□□□ 0.6
USP42-207ENST00000521713 IQCEQ6IPM2 695 aa18.8■□□□□ 0.6
USP42-207ENST00000521713 PARP3Q9Y6F1 533 aa18.8■□□□□ 0.6
USP42-207ENST00000521713 UBXN4Q92575 508 aa18.8■□□□□ 0.6
USP42-207ENST00000521713 PHACTR3Q96KR7 559 aa18.8■□□□□ 0.6
USP42-207ENST00000521713 DDX21Q9NR30 783 aaKnown RBP eCLIP18.8■□□□□ 0.6
USP42-207ENST00000521713 TMCO3Q6UWJ1 677 aa18.79■□□□□ 0.6
USP42-207ENST00000521713 FEZ1Q99689 392 aa18.79■□□□□ 0.6
USP42-207ENST00000521713 RAB34Q9BZG1 259 aa18.79■□□□□ 0.6
USP42-207ENST00000521713 GOLGA8AA7E2F4 631 aa18.79■□□□□ 0.6
USP42-207ENST00000521713 GOLGA8BA8MQT2 603 aa18.79■□□□□ 0.6
USP42-207ENST00000521713 VAMP4O75379 141 aa18.79■□□□□ 0.6
USP42-207ENST00000521713 SERPINC1P01008 464 aa18.79■□□□□ 0.6
USP42-207ENST00000521713 BRPF1P55201 1214 aaPredicted RBP18.79■□□□□ 0.6
USP42-207ENST00000521713 LUC7LQ9NQ29 371 aaKnown RBP18.79■□□□□ 0.6
USP42-207ENST00000521713 CLCN1P35523 988 aa18.79■□□□□ 0.6
USP42-207ENST00000521713 EHMT1Q9H9B1 1298 aa18.79■□□□□ 0.6
USP42-207ENST00000521713 MFSD6Q6ZSS7 791 aa18.78■□□□□ 0.6
USP42-207ENST00000521713 CCDC12Q8WUD4 166 aaPredicted RBP18.78■□□□□ 0.6
USP42-207ENST00000521713 TSPY2A6NKD2 308 aa18.78■□□□□ 0.6
USP42-207ENST00000521713 PPP4R3BQ5MIZ7 849 aa18.78■□□□□ 0.6
USP42-207ENST00000521713 TTC22Q5TAA0 569 aa18.78■□□□□ 0.6
USP42-207ENST00000521713 MAGI2Q86UL8 1455 aa18.78■□□□□ 0.6
USP42-207ENST00000521713 HOXB7P09629 217 aa18.78■□□□□ 0.6
USP42-207ENST00000521713 ZRSR2Q15696 482 aaKnown RBP18.78■□□□□ 0.6
USP42-207ENST00000521713 OGFOD1Q8N543 542 aa18.78■□□□□ 0.6
USP42-207ENST00000521713 NUP62CLQ9H1M0 184 aa18.78■□□□□ 0.6
USP42-207ENST00000521713 YEATS2Q9ULM3 1422 aa18.77■□□□□ 0.6
USP42-207ENST00000521713 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.77■□□□□ 0.6
USP42-207ENST00000521713 PER1O15534 1290 aaPredicted RBP18.77■□□□□ 0.6
USP42-207ENST00000521713 SCAND2PQ9GZW5 306 aaPredicted RBP18.77■□□□□ 0.6
USP42-207ENST00000521713 FAM107BQ9H098 131 aa18.77■□□□□ 0.6
USP42-207ENST00000521713 ERLIN2O94905 339 aa18.77■□□□□ 0.6
USP42-207ENST00000521713 LTKP29376 864 aa18.77■□□□□ 0.6
USP42-207ENST00000521713 ARHGEF5Q12774 1597 aa18.77■□□□□ 0.6
USP42-207ENST00000521713 SSRP1Q08945 709 aaKnown RBP18.77■□□□□ 0.6
USP42-207ENST00000521713 ZNF804AQ7Z570 1209 aa18.77■□□□□ 0.6
USP42-207ENST00000521713 NCOA7Q8NI08 942 aa18.77■□□□□ 0.6
USP42-207ENST00000521713 PRIMPOLQ96LW4 560 aa18.77■□□□□ 0.59
USP42-207ENST00000521713 ZC3H12CQ9C0D7 883 aaKnown RBP18.77■□□□□ 0.59
USP42-207ENST00000521713 IRS4O14654 1257 aaPredicted RBP18.76■□□□□ 0.59
USP42-207ENST00000521713 CCDC178Q5BJE1 867 aa18.76■□□□□ 0.59
USP42-207ENST00000521713 TRAPPC3LQ5T215 181 aa18.76■□□□□ 0.59
USP42-207ENST00000521713 PPFIBP1Q86W92 1011 aa18.76■□□□□ 0.59
USP42-207ENST00000521713 CCDC194A0A1B0GVG4 234 aa18.76■□□□□ 0.59
USP42-207ENST00000521713 IL13P35225 146 aa18.76■□□□□ 0.59
USP42-207ENST00000521713 TMEM67Q5HYA8 995 aa18.75■□□□□ 0.59
USP42-207ENST00000521713 ZNF790Q6PG37 636 aa18.75■□□□□ 0.59
USP42-207ENST00000521713 TANGO6Q9C0B7 1094 aa18.75■□□□□ 0.59
USP42-207ENST00000521713 ZMYND15Q9H091 742 aa18.75■□□□□ 0.59
USP42-207ENST00000521713 FILIP1Q7Z7B0 1213 aa18.75■□□□□ 0.59
USP42-207ENST00000521713 KAT14Q9H8E8 782 aa18.75■□□□□ 0.59
USP42-207ENST00000521713 PARP10Q53GL7 1025 aa18.75■□□□□ 0.59
USP42-207ENST00000521713 ANKRD2Q9GZV1 360 aa18.75■□□□□ 0.59
USP42-207ENST00000521713 NUCB1Q02818 461 aa18.75■□□□□ 0.59
USP42-207ENST00000521713 CYP7A1P22680 504 aa18.74■□□□□ 0.59
USP42-207ENST00000521713 FERMT3Q86UX7 667 aa18.74■□□□□ 0.59
USP42-207ENST00000521713 NEK1Q96PY6 1258 aa18.74■□□□□ 0.59
USP42-207ENST00000521713 ABCA8O94911 1581 aa18.74■□□□□ 0.59
USP42-207ENST00000521713 SMTNL1A8MU46 457 aa18.74■□□□□ 0.59
USP42-207ENST00000521713 NEMFO60524 1076 aa18.74■□□□□ 0.59
USP42-207ENST00000521713 TBC1D9Q6ZT07 1266 aa18.74■□□□□ 0.59
USP42-207ENST00000521713 EYA3Q99504 573 aa18.74■□□□□ 0.59
USP42-207ENST00000521713 GNPATO15228 680 aa18.74■□□□□ 0.59
USP42-207ENST00000521713 NLRP5P59047 1200 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 953.8 ms