RNA–Protein interactions for RNA: ENST00000518538.5

VEGFA-217, Transcript of vascular endothelial growth factor A, humanhuman

TSL 2

Gene VEGFA, Length 535 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-217ENST00000518538 ADCY9O60503 1353 aa28.14■■■□□ 2.1
VEGFA-217ENST00000518538 KLRG2A4D1S0 409 aaPredicted RBP28.14■■■□□ 2.1
VEGFA-217ENST00000518538 PI4KAP2A4QPH2 592 aa28.14■■■□□ 2.1
VEGFA-217ENST00000518538 ATP5J2-PTCD1G3V325 749 aa28.14■■■□□ 2.1
VEGFA-217ENST00000518538 TRIM28Q13263 835 aaKnown RBP28.14■■■□□ 2.1
VEGFA-217ENST00000518538 DALRD3Q5D0E6 543 aaKnown RBP28.14■■■□□ 2.1
VEGFA-217ENST00000518538 PI4KAP1Q8N8J0 262 aa28.14■■■□□ 2.1
VEGFA-217ENST00000518538 ZNF428Q96B54 188 aa28.14■■■□□ 2.1
VEGFA-217ENST00000518538 METTL22Q9BUU2 404 aaPredicted RBP28.14■■■□□ 2.1
VEGFA-217ENST00000518538 MAP3K2Q9Y2U5 619 aa28.14■■■□□ 2.1
VEGFA-217ENST00000518538 COL11A2P13942 1736 aaPredicted RBP28.14■■■□□ 2.1
VEGFA-217ENST00000518538 SRGNP10124 158 aa28.12■■■□□ 2.09
VEGFA-217ENST00000518538 FKBP5Q13451 457 aaPredicted RBP28.12■■■□□ 2.09
VEGFA-217ENST00000518538 MYD88Q99836 296 aa28.12■■■□□ 2.09
VEGFA-217ENST00000518538 ZBED9Q6R2W3 1325 aa28.12■■■□□ 2.09
VEGFA-217ENST00000518538 CT47B1P0C2W7 299 aaPredicted RBP28.11■■■□□ 2.09
VEGFA-217ENST00000518538 TTLL6Q8N841 843 aa28.11■■■□□ 2.09
VEGFA-217ENST00000518538 TRMT112Q9UI30 125 aaKnown RBP28.11■■■□□ 2.09
VEGFA-217ENST00000518538 TNRC6CQ9HCJ0 1690 aaKnown RBP28.1■■■□□ 2.09
VEGFA-217ENST00000518538 STYK1Q6J9G0 422 aa28.1■■■□□ 2.09
VEGFA-217ENST00000518538 ZNF622Q969S3 477 aaKnown RBP eCLIP28.1■■■□□ 2.093e-16■□□□□ 9
VEGFA-217ENST00000518538 MASTLQ96GX5 879 aa28.1■■■□□ 2.09
VEGFA-217ENST00000518538 SH3TC1Q8TE82 1336 aa28.1■■■□□ 2.09
VEGFA-217ENST00000518538 SLC10A5Q5PT55 438 aa28.09■■■□□ 2.09
VEGFA-217ENST00000518538 NPR1P16066 1061 aa28.08■■■□□ 2.09
VEGFA-217ENST00000518538 CCDC191Q8NCU4 936 aa28.08■■■□□ 2.09
VEGFA-217ENST00000518538 ARFGEF1Q9Y6D6 1849 aa28.08■■■□□ 2.09
VEGFA-217ENST00000518538 NEXNQ0ZGT2 675 aa28.07■■■□□ 2.08
VEGFA-217ENST00000518538 CRY2Q49AN0 593 aa28.07■■■□□ 2.08
VEGFA-217ENST00000518538 ALDH1L2Q3SY69 923 aa28.06■■■□□ 2.08
VEGFA-217ENST00000518538 MRPL50Q8N5N7 158 aaKnown RBP28.06■■■□□ 2.08
VEGFA-217ENST00000518538 DNAAF4Q8WXU2 420 aa28.06■■■□□ 2.08
VEGFA-217ENST00000518538 CNKSR1Q969H4 720 aa28.06■■■□□ 2.08
VEGFA-217ENST00000518538 SYNE4Q8N205 404 aa28.05■■■□□ 2.08
VEGFA-217ENST00000518538 SSH1Q8WYL5 1049 aa28.05■■■□□ 2.08
VEGFA-217ENST00000518538 NLRP3Q96P20 1036 aa28.05■■■□□ 2.08
VEGFA-217ENST00000518538 CWC25Q9NXE8 425 aaPredicted RBP28.05■■■□□ 2.08
VEGFA-217ENST00000518538 GOLGB1Q14789 3259 aaKnown RBP28.05■■■□□ 2.08
VEGFA-217ENST00000518538 IGKV5-2P06315 115 aa28.04■■■□□ 2.08
VEGFA-217ENST00000518538 ZBTB38Q8NAP3 1195 aaPredicted RBP28.04■■■□□ 2.08
VEGFA-217ENST00000518538 FAM89AQ96GI7 184 aa28.04■■■□□ 2.08
VEGFA-217ENST00000518538 HCLS1P14317 486 aaPredicted RBP28.02■■■□□ 2.08
VEGFA-217ENST00000518538 C3orf67Q6ZVT6 689 aa28.02■■■□□ 2.08
VEGFA-217ENST00000518538 RPGRQ92834 1020 aaKnown RBP28.02■■■□□ 2.08
VEGFA-217ENST00000518538 NEURL1BA8MQ27 555 aa28.01■■■□□ 2.07
VEGFA-217ENST00000518538 PCCAP05165 728 aaPredicted RBP28.01■■■□□ 2.07
VEGFA-217ENST00000518538 CWF19L2Q2TBE0 894 aaKnown RBP28.01■■■□□ 2.07
VEGFA-217ENST00000518538 PRPF40BQ6NWY9 871 aaKnown RBP28.01■■■□□ 2.07
VEGFA-217ENST00000518538 BCL2L13Q9BXK5 485 aa28.01■■■□□ 2.07
VEGFA-217ENST00000518538 F6X3S4 739 aa28■■■□□ 2.07
VEGFA-217ENST00000518538 ALDH1B1P30837 517 aa28■■■□□ 2.07
VEGFA-217ENST00000518538 HOXA10P31260 410 aaPredicted RBP28■■■□□ 2.07
VEGFA-217ENST00000518538 ARHGAP27Q6ZUM4 889 aa28■■■□□ 2.07
VEGFA-217ENST00000518538 LINS1Q8NG48 757 aa28■■■□□ 2.07
VEGFA-217ENST00000518538 SMC4Q9NTJ3 1288 aa28■■■□□ 2.07
VEGFA-217ENST00000518538 PTPRCP08575 1304 aa27.99■■■□□ 2.07
VEGFA-217ENST00000518538 DDX60Q8IY21 1712 aaKnown RBP27.99■■■□□ 2.07
VEGFA-217ENST00000518538 RTL5Q5HYW3 569 aaPredicted RBP27.99■■■□□ 2.07
VEGFA-217ENST00000518538 CHD4Q14839 1912 aa27.98■■■□□ 2.07
VEGFA-217ENST00000518538 IRS4O14654 1257 aaPredicted RBP27.98■■■□□ 2.07
VEGFA-217ENST00000518538 RBM17Q96I25 401 aaKnown RBP27.98■■■□□ 2.07
VEGFA-217ENST00000518538 SLX4Q8IY92 1834 aa27.97■■■□□ 2.07
VEGFA-217ENST00000518538 LAMB2P55268 1798 aa27.97■■■□□ 2.07
VEGFA-217ENST00000518538 HSP90B1P14625 803 aaKnown RBP27.97■■■□□ 2.07
VEGFA-217ENST00000518538 CRAMP1Q96RY5 1269 aa27.97■■■□□ 2.07
VEGFA-217ENST00000518538 UTRNP46939 3433 aa27.97■■■□□ 2.07
VEGFA-217ENST00000518538 CACNA1SQ13698 1873 aa27.96■■■□□ 2.07
VEGFA-217ENST00000518538 C21orf2O43822 256 aa27.96■■■□□ 2.07
VEGFA-217ENST00000518538 RARSP54136 660 aaKnown RBP27.96■■■□□ 2.07
VEGFA-217ENST00000518538 BRPF1P55201 1214 aaPredicted RBP27.96■■■□□ 2.07
VEGFA-217ENST00000518538 BEND3Q5T5X7 828 aa27.96■■■□□ 2.07
VEGFA-217ENST00000518538 CDHR2Q9BYE9 1310 aa27.95■■■□□ 2.07
VEGFA-217ENST00000518538 YY1P25490 414 aa27.95■■■□□ 2.06
VEGFA-217ENST00000518538 GCKRQ14397 625 aa27.95■■■□□ 2.06
VEGFA-217ENST00000518538 SOGA3Q5TF21 947 aa27.94■■■□□ 2.06
VEGFA-217ENST00000518538 SF3B3Q15393 1217 aaKnown RBP27.93■■■□□ 2.06
VEGFA-217ENST00000518538 C7orf43Q8WVR3 580 aa27.93■■■□□ 2.06
VEGFA-217ENST00000518538 JARID2Q92833 1246 aaPredicted RBP27.93■■■□□ 2.06
VEGFA-217ENST00000518538 ZNF219Q9P2Y4 722 aaPredicted RBP27.93■■■□□ 2.06
VEGFA-217ENST00000518538 H7C1W4 665 aa27.92■■■□□ 2.06
VEGFA-217ENST00000518538 SLC4A10Q6U841 1118 aa27.92■■■□□ 2.06
VEGFA-217ENST00000518538 PDE8AO60658 829 aa27.91■■■□□ 2.06
VEGFA-217ENST00000518538 ABCC4O15439 1325 aa27.91■■■□□ 2.06
VEGFA-217ENST00000518538 DDX46Q7L014 1031 aaKnown RBP27.9■■■□□ 2.06
VEGFA-217ENST00000518538 UBE3BQ7Z3V4 1068 aa27.9■■■□□ 2.06
VEGFA-217ENST00000518538 ALDH1L1O75891 902 aa27.89■■■□□ 2.06
VEGFA-217ENST00000518538 CCDC93Q567U6 631 aa27.89■■■□□ 2.06
VEGFA-217ENST00000518538 SRCIN1Q9C0H9 1055 aa27.89■■■□□ 2.06
VEGFA-217ENST00000518538 NFKBIEO00221 500 aa27.88■■■□□ 2.05
VEGFA-217ENST00000518538 PPEF1O14829 653 aaPredicted RBP27.88■■■□□ 2.05
VEGFA-217ENST00000518538 NOB1Q9ULX3 412 aaKnown RBP27.88■■■□□ 2.05
VEGFA-217ENST00000518538 KIF16BQ96L93 1317 aa27.88■■■□□ 2.05
VEGFA-217ENST00000518538 CASP7P55210 303 aa27.87■■■□□ 2.05
VEGFA-217ENST00000518538 RASSF7Q02833 373 aa27.87■■■□□ 2.05
VEGFA-217ENST00000518538 GRAPQ13588 217 aa27.87■■■□□ 2.05
VEGFA-217ENST00000518538 GRAPLQ8TC17 118 aaPredicted RBP27.87■■■□□ 2.05
VEGFA-217ENST00000518538 PLA2G12BQ9BX93 195 aa27.86■■■□□ 2.05
VEGFA-217ENST00000518538 FER1L6Q2WGJ9 1857 aa27.86■■■□□ 2.05
VEGFA-217ENST00000518538 LTBP3Q9NS15 1303 aa27.86■■■□□ 2.05
VEGFA-217ENST00000518538 BBOX1O75936 387 aa27.85■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms