RNA–Protein interactions for RNA: ENST00000515527.1

SMAD1-216, Transcript of SMAD family member 1, humanhuman

TSL 2

Gene SMAD1, Length 632 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-216ENST00000515527 NIM1KQ8IY84 436 aa18.53■□□□□ 0.56
SMAD1-216ENST00000515527 TBC1D2BQ9UPU7 963 aa18.53■□□□□ 0.56
SMAD1-216ENST00000515527 CENPFP49454 3210 aa18.52■□□□□ 0.56
SMAD1-216ENST00000515527 EN2P19622 333 aaPredicted RBP18.52■□□□□ 0.56
SMAD1-216ENST00000515527 EIF5P55010 431 aaKnown RBP18.52■□□□□ 0.56
SMAD1-216ENST00000515527 COL25A1Q9BXS0 654 aaPredicted RBP18.52■□□□□ 0.56
SMAD1-216ENST00000515527 GPR25O00155 361 aa18.5■□□□□ 0.55
SMAD1-216ENST00000515527 ALDH1B1P30837 517 aa18.5■□□□□ 0.55
SMAD1-216ENST00000515527 GMPSP49915 693 aaPredicted RBP18.5■□□□□ 0.55
SMAD1-216ENST00000515527 HIRAP54198 1017 aaPredicted RBP18.5■□□□□ 0.55
SMAD1-216ENST00000515527 AMOTQ4VCS5 1084 aa18.5■□□□□ 0.55
SMAD1-216ENST00000515527 RBM27Q9P2N5 1060 aaKnown RBP18.5■□□□□ 0.55
SMAD1-216ENST00000515527 HTTP42858 3142 aa18.49■□□□□ 0.55
SMAD1-216ENST00000515527 RANBP2P49792 3224 aaKnown RBP18.49■□□□□ 0.55
SMAD1-216ENST00000515527 SLC39A6Q13433 755 aa18.49■□□□□ 0.55
SMAD1-216ENST00000515527 NBPF5PQ86XG9 351 aaPredicted RBP18.49■□□□□ 0.55
SMAD1-216ENST00000515527 TRPM4Q8TD43 1214 aa18.48■□□□□ 0.55
SMAD1-216ENST00000515527 BRCA2P51587 3418 aa18.48■□□□□ 0.55
SMAD1-216ENST00000515527 UNC80Q8N2C7 3258 aa18.47■□□□□ 0.55
SMAD1-216ENST00000515527 POLR2AP24928 1970 aaKnown RBP18.46■□□□□ 0.55
SMAD1-216ENST00000515527 NPC1L1Q9UHC9 1359 aa18.46■□□□□ 0.55
SMAD1-216ENST00000515527 FKTNO75072 461 aa18.46■□□□□ 0.55
SMAD1-216ENST00000515527 KRT26Q7Z3Y9 468 aa18.46■□□□□ 0.55
SMAD1-216ENST00000515527 BCL2L13Q9BXK5 485 aa18.46■□□□□ 0.55
SMAD1-216ENST00000515527 CARD11Q9BXL7 1154 aa18.46■□□□□ 0.55
SMAD1-216ENST00000515527 SNED1Q8TER0 1413 aa18.46■□□□□ 0.55
SMAD1-216ENST00000515527 STARD3NLO95772 234 aa18.45■□□□□ 0.54
SMAD1-216ENST00000515527 EIF4A2Q14240 407 aaKnown RBP18.45■□□□□ 0.54
SMAD1-216ENST00000515527 CC2D2BQ6DHV5 1058 aa18.45■□□□□ 0.54
SMAD1-216ENST00000515527 NPM2Q86SE8 214 aaKnown RBP18.45■□□□□ 0.54
SMAD1-216ENST00000515527 KLRG2A4D1S0 409 aaPredicted RBP18.44■□□□□ 0.54
SMAD1-216ENST00000515527 CXCL9Q07325 125 aa18.44■□□□□ 0.54
SMAD1-216ENST00000515527 NOM1Q5C9Z4 860 aaKnown RBP18.44■□□□□ 0.54
SMAD1-216ENST00000515527 RASAL3Q86YV0 1011 aa18.44■□□□□ 0.54
SMAD1-216ENST00000515527 PPIP5K2O43314 1243 aa18.43■□□□□ 0.54
SMAD1-216ENST00000515527 VSIG10Q8N0Z9 540 aa18.43■□□□□ 0.54
SMAD1-216ENST00000515527 SLC52A2Q9HAB3 445 aa18.43■□□□□ 0.54
SMAD1-216ENST00000515527 CDHR2Q9BYE9 1310 aa18.43■□□□□ 0.54
SMAD1-216ENST00000515527 TRIM17Q9Y577 477 aa18.42■□□□□ 0.54
SMAD1-216ENST00000515527 CAMTA2O94983 1202 aa18.41■□□□□ 0.54
SMAD1-216ENST00000515527 AOC3Q16853 763 aa18.41■□□□□ 0.54
SMAD1-216ENST00000515527 TMEM106CQ9BVX2 250 aa18.41■□□□□ 0.54
SMAD1-216ENST00000515527 ADM5C9JUS6 153 aa18.4■□□□□ 0.54
SMAD1-216ENST00000515527 H7C1D1 291 aa18.4■□□□□ 0.54
SMAD1-216ENST00000515527 CNOT7Q9UIV1 285 aaKnown RBP18.4■□□□□ 0.54
SMAD1-216ENST00000515527 GRIPAP1Q4V328 841 aa18.39■□□□□ 0.53
SMAD1-216ENST00000515527 TPTE2Q6XPS3 522 aa18.39■□□□□ 0.53
SMAD1-216ENST00000515527 MPNDQ8N594 471 aa18.39■□□□□ 0.53
SMAD1-216ENST00000515527 PRDM6Q9NQX0 595 aa18.39■□□□□ 0.53
SMAD1-216ENST00000515527 ZNRF3Q9ULT6 936 aa18.39■□□□□ 0.53
SMAD1-216ENST00000515527 SHTN1A0MZ66 631 aa18.38■□□□□ 0.53
SMAD1-216ENST00000515527 DCPSQ96C86 337 aaKnown RBP18.38■□□□□ 0.53
SMAD1-216ENST00000515527 FAM177BA6PVY3 158 aa18.37■□□□□ 0.53
SMAD1-216ENST00000515527 IL6STP40189 918 aaPredicted RBP18.37■□□□□ 0.53
SMAD1-216ENST00000515527 TCERG1O14776 1098 aaKnown RBP18.36■□□□□ 0.53
SMAD1-216ENST00000515527 RAD17O75943 681 aa18.36■□□□□ 0.53
SMAD1-216ENST00000515527 TNIP1Q15025 636 aa18.36■□□□□ 0.53
SMAD1-216ENST00000515527 OTOP1Q7RTM1 612 aa18.36■□□□□ 0.53
SMAD1-216ENST00000515527 DZIP3Q86Y13 1208 aaKnown RBP18.36■□□□□ 0.53
SMAD1-216ENST00000515527 MICALL2Q8IY33 904 aa18.36■□□□□ 0.53
SMAD1-216ENST00000515527 POLKQ9UBT6 870 aa18.36■□□□□ 0.53
SMAD1-216ENST00000515527 LGR6Q9HBX8 967 aa18.35■□□□□ 0.53
SMAD1-216ENST00000515527 GTF2E1P29083 439 aaPredicted RBP18.34■□□□□ 0.53
SMAD1-216ENST00000515527 SAMD7Q7Z3H4 446 aa18.34■□□□□ 0.53
SMAD1-216ENST00000515527 ARMC5Q96C12 935 aa18.34■□□□□ 0.53
SMAD1-216ENST00000515527 LRCH3Q96II8 777 aa18.34■□□□□ 0.53
SMAD1-216ENST00000515527 R3HDMLQ9H3Y0 253 aa18.34■□□□□ 0.53
SMAD1-216ENST00000515527 SOX1O00570 391 aaPredicted RBP18.33■□□□□ 0.52
SMAD1-216ENST00000515527 TNNT2P45379 298 aaPredicted RBP18.33■□□□□ 0.52
SMAD1-216ENST00000515527 TBC1D10BQ4KMP7 808 aaPredicted RBP18.33■□□□□ 0.52
SMAD1-216ENST00000515527 DPF3Q92784 378 aa18.33■□□□□ 0.52
SMAD1-216ENST00000515527 TM4SF4P48230 202 aa18.32■□□□□ 0.52
SMAD1-216ENST00000515527 SLC51AQ86UW1 340 aa18.32■□□□□ 0.52
SMAD1-216ENST00000515527 TTC5Q8N0Z6 440 aa18.32■□□□□ 0.52
SMAD1-216ENST00000515527 ZNF652Q9Y2D9 606 aa18.32■□□□□ 0.52
SMAD1-216ENST00000515527 PTPN22Q9Y2R2 807 aa18.32■□□□□ 0.52
SMAD1-216ENST00000515527 UBR2Q8IWV8 1755 aa18.32■□□□□ 0.52
SMAD1-216ENST00000515527 SLC4A8Q2Y0W8 1093 aa18.31■□□□□ 0.52
SMAD1-216ENST00000515527 AEBP1Q8IUX7 1158 aa18.31■□□□□ 0.52
SMAD1-216ENST00000515527 SULF1Q8IWU6 871 aa18.31■□□□□ 0.52
SMAD1-216ENST00000515527 RPGRQ92834 1020 aaKnown RBP18.31■□□□□ 0.52
SMAD1-216ENST00000515527 VPS33BQ9H267 617 aa18.31■□□□□ 0.52
SMAD1-216ENST00000515527 MRC1P22897 1456 aa18.31■□□□□ 0.52
SMAD1-216ENST00000515527 PPEF1O14829 653 aaPredicted RBP18.3■□□□□ 0.52
SMAD1-216ENST00000515527 COL9A1P20849 921 aa18.3■□□□□ 0.52
SMAD1-216ENST00000515527 RBM26Q5T8P6 1007 aaKnown RBP18.3■□□□□ 0.52
SMAD1-216ENST00000515527 CLEC4GQ6UXB4 293 aa18.3■□□□□ 0.52
SMAD1-216ENST00000515527 ANKRD13DQ6ZTN6 518 aa18.3■□□□□ 0.52
SMAD1-216ENST00000515527 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.3■□□□□ 0.52
SMAD1-216ENST00000515527 CDCA5Q96FF9 252 aa18.3■□□□□ 0.52
SMAD1-216ENST00000515527 TMX4Q9H1E5 349 aaPredicted RBP18.3■□□□□ 0.52
SMAD1-216ENST00000515527 NIP7Q9Y221 180 aaKnown RBP eCLIP18.3■□□□□ 0.52
SMAD1-216ENST00000515527 STXBP5LQ9Y2K9 1186 aa18.3■□□□□ 0.52
SMAD1-216ENST00000515527 RNMTO43148 476 aaKnown RBP18.29■□□□□ 0.52
SMAD1-216ENST00000515527 A1BGP04217 495 aa18.29■□□□□ 0.52
SMAD1-216ENST00000515527 SREBF2Q12772 1141 aa18.29■□□□□ 0.52
SMAD1-216ENST00000515527 MKRN3Q13064 507 aaKnown RBP18.29■□□□□ 0.52
SMAD1-216ENST00000515527 TESK2Q96S53 571 aa18.29■□□□□ 0.52
SMAD1-216ENST00000515527 CFHR5Q9BXR6 569 aa18.29■□□□□ 0.52
SMAD1-216ENST00000515527 TEX13AQ9BXU3 409 aaPredicted RBP18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms