RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 MBIPQ9NS73 344 aa17.74■□□□□ 0.43
TCOF1-215ENST00000515516 IFT57Q9NWB7 429 aa17.74■□□□□ 0.43
TCOF1-215ENST00000515516 DBF4Q9UBU7 674 aaPredicted RBP17.74■□□□□ 0.43
TCOF1-215ENST00000515516 ABCC12Q96J65 1359 aa17.74■□□□□ 0.43
TCOF1-215ENST00000515516 COL11A2P13942 1736 aaPredicted RBP17.73■□□□□ 0.43
TCOF1-215ENST00000515516 ANP32CO43423 234 aa17.73■□□□□ 0.43
TCOF1-215ENST00000515516 HOXA10P31260 410 aaPredicted RBP17.72■□□□□ 0.43
TCOF1-215ENST00000515516 TCIRG1Q13488 830 aa17.72■□□□□ 0.43
TCOF1-215ENST00000515516 CHMP4AQ9BY43 222 aa17.72■□□□□ 0.43
TCOF1-215ENST00000515516 ZNF277Q9NRM2 450 aaPredicted RBP17.72■□□□□ 0.43
TCOF1-215ENST00000515516 HYPKQ9NX55 129 aa17.72■□□□□ 0.43
TCOF1-215ENST00000515516 RNF123Q5XPI4 1314 aa17.72■□□□□ 0.43
TCOF1-215ENST00000515516 GRIPAP1Q4V328 841 aa17.71■□□□□ 0.43
TCOF1-215ENST00000515516 SLC10A5Q5PT55 438 aa17.71■□□□□ 0.43
TCOF1-215ENST00000515516 OLFM4Q6UX06 510 aa17.71■□□□□ 0.43
TCOF1-215ENST00000515516 ANKRD13DQ6ZTN6 518 aa17.71■□□□□ 0.43
TCOF1-215ENST00000515516 SYNE4Q8N205 404 aa17.71■□□□□ 0.43
TCOF1-215ENST00000515516 CRAMP1Q96RY5 1269 aa17.71■□□□□ 0.43
TCOF1-215ENST00000515516 TRMT112Q9UI30 125 aaKnown RBP17.71■□□□□ 0.43
TCOF1-215ENST00000515516 RIC1Q4ADV7 1423 aa17.71■□□□□ 0.43
TCOF1-215ENST00000515516 ZNF853P0CG23 659 aa17.7■□□□□ 0.42
TCOF1-215ENST00000515516 NLRP10Q86W26 655 aa17.7■□□□□ 0.42
TCOF1-215ENST00000515516 PLBD2Q8NHP8 589 aa17.7■□□□□ 0.42
TCOF1-215ENST00000515516 TCERG1O14776 1098 aaKnown RBP17.69■□□□□ 0.42
TCOF1-215ENST00000515516 PPEF1O14829 653 aaPredicted RBP17.69■□□□□ 0.42
TCOF1-215ENST00000515516 DDNO94850 711 aaPredicted RBP17.69■□□□□ 0.42
TCOF1-215ENST00000515516 IARSP41252 1262 aaKnown RBP17.69■□□□□ 0.42
TCOF1-215ENST00000515516 SLX4Q8IY92 1834 aa17.69■□□□□ 0.42
TCOF1-215ENST00000515516 SBF1O95248 1867 aa17.69■□□□□ 0.42
TCOF1-215ENST00000515516 SH3TC1Q8TE82 1336 aa17.69■□□□□ 0.42
TCOF1-215ENST00000515516 ELL2O00472 640 aaPredicted RBP17.68■□□□□ 0.42
TCOF1-215ENST00000515516 JDP2Q8WYK2 163 aa17.68■□□□□ 0.42
TCOF1-215ENST00000515516 PSMD1Q99460 953 aa17.68■□□□□ 0.42
TCOF1-215ENST00000515516 MRS2Q9HD23 443 aa17.68■□□□□ 0.42
TCOF1-215ENST00000515516 IQCA1LA6NCM1 817 aa17.67■□□□□ 0.42
TCOF1-215ENST00000515516 HCLS1P14317 486 aaPredicted RBP17.67■□□□□ 0.42
TCOF1-215ENST00000515516 GOLGA2Q08379 1002 aa17.67■□□□□ 0.42
TCOF1-215ENST00000515516 CCDC184Q52MB2 194 aa17.67■□□□□ 0.42
TCOF1-215ENST00000515516 C3orf67Q6ZVT6 689 aa17.67■□□□□ 0.42
TCOF1-215ENST00000515516 POTECB2RU33 542 aa17.66■□□□□ 0.42
TCOF1-215ENST00000515516 DDX46Q7L014 1031 aaKnown RBP17.66■□□□□ 0.42
TCOF1-215ENST00000515516 RIC3Q7Z5B4 369 aa17.66■□□□□ 0.42
TCOF1-215ENST00000515516 TNRC6CQ9HCJ0 1690 aaKnown RBP17.65■□□□□ 0.42
TCOF1-215ENST00000515516 BBOX1O75936 387 aa17.65■□□□□ 0.42
TCOF1-215ENST00000515516 CCDC30Q5VVM6 783 aa17.65■□□□□ 0.42
TCOF1-215ENST00000515516 NUP98P52948 1817 aa17.65■□□□□ 0.42
TCOF1-215ENST00000515516 ATP5J2-PTCD1G3V325 749 aa17.64■□□□□ 0.41
TCOF1-215ENST00000515516 EIF6P56537 245 aaKnown RBP17.64■□□□□ 0.41
TCOF1-215ENST00000515516 CCDC27Q2M243 656 aa17.64■□□□□ 0.41
TCOF1-215ENST00000515516 LARGE2Q8N3Y3 721 aa17.64■□□□□ 0.41
TCOF1-215ENST00000515516 ATP6V0A2Q9Y487 856 aa17.64■□□□□ 0.41
TCOF1-215ENST00000515516 FER1L6Q2WGJ9 1857 aa17.64■□□□□ 0.41
TCOF1-215ENST00000515516 FZD9O00144 591 aa17.63■□□□□ 0.41
TCOF1-215ENST00000515516 DDX58O95786 925 aaKnown RBP17.63■□□□□ 0.41
TCOF1-215ENST00000515516 C8orf58Q8NAV2 365 aa17.63■□□□□ 0.41
TCOF1-215ENST00000515516 SUPT20HQ8NEM7 779 aa17.63■□□□□ 0.41
TCOF1-215ENST00000515516 ZNF428Q96B54 188 aa17.63■□□□□ 0.41
TCOF1-215ENST00000515516 ISCA1Q9BUE6 129 aa17.63■□□□□ 0.41
TCOF1-215ENST00000515516 ABCC4O15439 1325 aa17.63■□□□□ 0.41
TCOF1-215ENST00000515516 TIAM2Q8IVF5 1701 aa17.63■□□□□ 0.41
TCOF1-215ENST00000515516 ARFGEF2Q9Y6D5 1785 aa17.63■□□□□ 0.41
TCOF1-215ENST00000515516 WWC1Q8IX03 1113 aa17.62■□□□□ 0.41
TCOF1-215ENST00000515516 L3MBTL3Q96JM7 780 aaPredicted RBP17.62■□□□□ 0.41
TCOF1-215ENST00000515516 ZNF541Q9H0D2 1346 aa17.62■□□□□ 0.41
TCOF1-215ENST00000515516 HSP90B1P14625 803 aaKnown RBP17.61■□□□□ 0.41
TCOF1-215ENST00000515516 TRIM28Q13263 835 aaKnown RBP17.61■□□□□ 0.41
TCOF1-215ENST00000515516 GRAPQ13588 217 aa17.61■□□□□ 0.41
TCOF1-215ENST00000515516 CHADLQ6NUI6 762 aa17.61■□□□□ 0.41
TCOF1-215ENST00000515516 SP8Q8IXZ3 490 aa17.61■□□□□ 0.41
TCOF1-215ENST00000515516 NIM1KQ8IY84 436 aa17.61■□□□□ 0.41
TCOF1-215ENST00000515516 GRAPLQ8TC17 118 aaPredicted RBP17.61■□□□□ 0.41
TCOF1-215ENST00000515516 FAM89AQ96GI7 184 aa17.61■□□□□ 0.41
TCOF1-215ENST00000515516 VPS33BQ9H267 617 aa17.61■□□□□ 0.41
TCOF1-215ENST00000515516 PHAXQ9H814 394 aaKnown RBP17.61■□□□□ 0.41
TCOF1-215ENST00000515516 HACL1Q9UJ83 578 aa17.61■□□□□ 0.41
TCOF1-215ENST00000515516 PPIP5K2O43314 1243 aa17.6■□□□□ 0.41
TCOF1-215ENST00000515516 HTRA3P83110 453 aa17.6■□□□□ 0.41
TCOF1-215ENST00000515516 NCBP3Q53F19 620 aaKnown RBP17.6■□□□□ 0.41
TCOF1-215ENST00000515516 DPP8Q6V1X1 898 aaPredicted RBP17.6■□□□□ 0.41
TCOF1-215ENST00000515516 TMC4Q7Z404 712 aa17.6■□□□□ 0.41
TCOF1-215ENST00000515516 GPC2Q8N158 579 aa17.6■□□□□ 0.41
TCOF1-215ENST00000515516 DNAJC5GQ8N7S2 189 aa17.6■□□□□ 0.41
TCOF1-215ENST00000515516 TSR2Q969E8 191 aaKnown RBP17.6■□□□□ 0.41
TCOF1-215ENST00000515516 STK31Q9BXU1 1019 aa17.6■□□□□ 0.41
TCOF1-215ENST00000515516 TAF1DQ9H5J8 278 aaPredicted RBP17.6■□□□□ 0.41
TCOF1-215ENST00000515516 GJA3Q9Y6H8 435 aa17.6■□□□□ 0.41
TCOF1-215ENST00000515516 WDR90Q96KV7 1748 aa17.6■□□□□ 0.41
TCOF1-215ENST00000515516 CACNA1SQ13698 1873 aa17.59■□□□□ 0.41
TCOF1-215ENST00000515516 IRS4O14654 1257 aaPredicted RBP17.59■□□□□ 0.41
TCOF1-215ENST00000515516 EAPPQ56P03 285 aaPredicted RBP17.59■□□□□ 0.41
TCOF1-215ENST00000515516 RTL5Q5HYW3 569 aaPredicted RBP17.59■□□□□ 0.41
TCOF1-215ENST00000515516 LDHDQ86WU2 507 aa17.59■□□□□ 0.41
TCOF1-215ENST00000515516 MPNDQ8N594 471 aa17.59■□□□□ 0.41
TCOF1-215ENST00000515516 MYD88Q99836 296 aa17.59■□□□□ 0.41
TCOF1-215ENST00000515516 CLEC11AQ9Y240 323 aa17.59■□□□□ 0.41
TCOF1-215ENST00000515516 IL16Q14005 1332 aa17.58■□□□□ 0.4
TCOF1-215ENST00000515516 LMOD1P29536 600 aaPredicted RBP17.58■□□□□ 0.4
TCOF1-215ENST00000515516 EPHX2P34913 555 aa17.58■□□□□ 0.4
TCOF1-215ENST00000515516 PNMA8AQ86V59 439 aaPredicted RBP17.58■□□□□ 0.4
TCOF1-215ENST00000515516 ZBTB38Q8NAP3 1195 aaPredicted RBP17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 290 ms