RNA–Protein interactions for RNA: ENST00000514439.1

CPNE4-211, Transcript of copine 4, humanhuman

TSL 1 (best)

Gene CPNE4, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-211ENST00000514439 GOLGA6L22H0YM25 854 aa9.93□□□□□ -0.82
CPNE4-211ENST00000514439 RFX5P48382 616 aaPredicted RBP9.93□□□□□ -0.82
CPNE4-211ENST00000514439 EVA1CP58658 441 aa9.93□□□□□ -0.82
CPNE4-211ENST00000514439 CUL4AQ13619 759 aa9.93□□□□□ -0.82
CPNE4-211ENST00000514439 RABL6Q3YEC7 729 aaPredicted RBP9.93□□□□□ -0.82
CPNE4-211ENST00000514439 L1TD1Q5T7N2 865 aaKnown RBP9.93□□□□□ -0.82
CPNE4-211ENST00000514439 RUFY2Q8WXA3 655 aa9.93□□□□□ -0.82
CPNE4-211ENST00000514439 RNF39Q9H2S5 420 aa9.93□□□□□ -0.82
CPNE4-211ENST00000514439 COPRSQ9NQ92 184 aa9.93□□□□□ -0.82
CPNE4-211ENST00000514439 AFDNP55196 1824 aaKnown RBP9.92□□□□□ -0.82
CPNE4-211ENST00000514439 TNS2Q63HR2 1409 aa9.92□□□□□ -0.82
CPNE4-211ENST00000514439 GOLGA6L3A6NEY3 463 aa9.92□□□□□ -0.82
CPNE4-211ENST00000514439 CASP7P55210 303 aa9.92□□□□□ -0.82
CPNE4-211ENST00000514439 PTPN12Q05209 780 aaKnown RBP9.92□□□□□ -0.82
CPNE4-211ENST00000514439 SKOR2Q2VWA4 1001 aaPredicted RBP9.92□□□□□ -0.82
CPNE4-211ENST00000514439 TTLL7Q6ZT98 887 aa9.92□□□□□ -0.82
CPNE4-211ENST00000514439 SNX14Q9Y5W7 946 aa9.92□□□□□ -0.82
CPNE4-211ENST00000514439 A1BGP04217 495 aa9.91□□□□□ -0.82
CPNE4-211ENST00000514439 RASEFQ8IZ41 740 aa9.91□□□□□ -0.82
CPNE4-211ENST00000514439 ZDHHC9Q9Y397 364 aa9.91□□□□□ -0.82
CPNE4-211ENST00000514439 ARXQ96QS3 562 aa9.91□□□□□ -0.82
CPNE4-211ENST00000514439 BOLA2Q9H3K6 86 aa9.91□□□□□ -0.82
CPNE4-211ENST00000514439 PTH1RQ03431 593 aa9.9□□□□□ -0.82
CPNE4-211ENST00000514439 MCTP1Q6DN14 999 aa9.9□□□□□ -0.82
CPNE4-211ENST00000514439 INTS4Q96HW7 963 aaKnown RBP9.9□□□□□ -0.82
CPNE4-211ENST00000514439 TFCP2Q12800 502 aa9.9□□□□□ -0.82
CPNE4-211ENST00000514439 TTC14Q96N46 770 aa9.9□□□□□ -0.82
CPNE4-211ENST00000514439 TOGARAM1Q9Y4F4 1720 aa9.9□□□□□ -0.82
CPNE4-211ENST00000514439 CCDC171Q6TFL3 1326 aa9.89□□□□□ -0.83
CPNE4-211ENST00000514439 NUP188Q5SRE5 1749 aa9.89□□□□□ -0.83
CPNE4-211ENST00000514439 H7C1W4 665 aa9.89□□□□□ -0.83
CPNE4-211ENST00000514439 HIP1O00291 1037 aa9.89□□□□□ -0.83
CPNE4-211ENST00000514439 NMIQ13287 307 aaPredicted RBP9.89□□□□□ -0.83
CPNE4-211ENST00000514439 TNNI3KQ59H18 835 aa9.89□□□□□ -0.83
CPNE4-211ENST00000514439 LMBR1LQ6UX01 489 aa9.89□□□□□ -0.83
CPNE4-211ENST00000514439 FAM227BQ96M60 508 aa9.89□□□□□ -0.83
CPNE4-211ENST00000514439 ZBTB3Q9H5J0 574 aa9.89□□□□□ -0.83
CPNE4-211ENST00000514439 CWC25Q9NXE8 425 aaPredicted RBP9.89□□□□□ -0.83
CPNE4-211ENST00000514439 TMOD3Q9NYL9 352 aa9.89□□□□□ -0.83
CPNE4-211ENST00000514439 DBNLQ9UJU6 430 aaKnown RBP9.89□□□□□ -0.83
CPNE4-211ENST00000514439 FPGT-TNNI3KV9GXZ4 949 aa9.89□□□□□ -0.83
CPNE4-211ENST00000514439 XRCC6P12956 609 aaKnown RBP eCLIP9.89□□□□□ -0.83
CPNE4-211ENST00000514439 FOXO4P98177 505 aa9.89□□□□□ -0.83
CPNE4-211ENST00000514439 FSD1Q9BTV5 496 aa9.89□□□□□ -0.83
CPNE4-211ENST00000514439 BTG4Q9NY30 223 aa9.89□□□□□ -0.83
CPNE4-211ENST00000514439 A0A0D9SFI3 127 aa9.88□□□□□ -0.83
CPNE4-211ENST00000514439 TJP1Q07157 1748 aa9.88□□□□□ -0.83
CPNE4-211ENST00000514439 KLHL40Q2TBA0 621 aa9.88□□□□□ -0.83
CPNE4-211ENST00000514439 PRPF40BQ6NWY9 871 aaKnown RBP9.88□□□□□ -0.83
CPNE4-211ENST00000514439 CHMP3Q9Y3E7 222 aa9.88□□□□□ -0.83
CPNE4-211ENST00000514439 DDX49Q9Y6V7 483 aaKnown RBP9.88□□□□□ -0.83
CPNE4-211ENST00000514439 BRD1O95696 1058 aa9.88□□□□□ -0.83
CPNE4-211ENST00000514439 CASTP20810 708 aaKnown RBP9.88□□□□□ -0.83
CPNE4-211ENST00000514439 AK2P54819 239 aa9.88□□□□□ -0.83
CPNE4-211ENST00000514439 CCDC191Q8NCU4 936 aa9.88□□□□□ -0.83
CPNE4-211ENST00000514439 SNRKQ9NRH2 765 aa9.88□□□□□ -0.83
CPNE4-211ENST00000514439 LMBRD1Q9NUN5 540 aa9.88□□□□□ -0.83
CPNE4-211ENST00000514439 CPA1P15085 419 aa9.87□□□□□ -0.83
CPNE4-211ENST00000514439 ATP5JP18859 108 aa9.87□□□□□ -0.83
CPNE4-211ENST00000514439 NECTIN1Q15223 517 aa9.87□□□□□ -0.83
CPNE4-211ENST00000514439 ADCK5Q3MIX3 580 aa9.87□□□□□ -0.83
CPNE4-211ENST00000514439 FOXD4L5Q5VV16 416 aaPredicted RBP9.87□□□□□ -0.83
CPNE4-211ENST00000514439 FOXD4L4Q8WXT5 416 aaPredicted RBP9.87□□□□□ -0.83
CPNE4-211ENST00000514439 KCNB2Q92953 911 aa9.87□□□□□ -0.83
CPNE4-211ENST00000514439 EDC3Q96F86 508 aaKnown RBP9.87□□□□□ -0.83
CPNE4-211ENST00000514439 ASAP1Q9ULH1 1129 aa9.87□□□□□ -0.83
CPNE4-211ENST00000514439 ISY1Q9ULR0 285 aaKnown RBP9.87□□□□□ -0.83
CPNE4-211ENST00000514439 RBM8AQ9Y5S9 174 aaKnown RBP9.87□□□□□ -0.83
CPNE4-211ENST00000514439 MRE11P49959 708 aa9.87□□□□□ -0.83
CPNE4-211ENST00000514439 RUFY3Q7L099 469 aa9.87□□□□□ -0.83
CPNE4-211ENST00000514439 PIGBQ92521 554 aa9.87□□□□□ -0.83
CPNE4-211ENST00000514439 MAP4K1Q92918 833 aa9.87□□□□□ -0.83
CPNE4-211ENST00000514439 CHAMP1Q96JM3 812 aa9.87□□□□□ -0.83
CPNE4-211ENST00000514439 JAKMIP1Q96N16 626 aaKnown RBP9.87□□□□□ -0.83
CPNE4-211ENST00000514439 DBNDD2Q9BQY9 259 aa9.87□□□□□ -0.83
CPNE4-211ENST00000514439 MED23Q9ULK4 1368 aa9.86□□□□□ -0.83
CPNE4-211ENST00000514439 DISP2A7MBM2 1401 aa9.86□□□□□ -0.83
CPNE4-211ENST00000514439 KCNA4P22459 653 aa9.86□□□□□ -0.83
CPNE4-211ENST00000514439 CREB3L3Q68CJ9 461 aa9.86□□□□□ -0.83
CPNE4-211ENST00000514439 TM6SF1Q9BZW5 370 aa9.86□□□□□ -0.83
CPNE4-211ENST00000514439 LIMCH1Q9UPQ0 1083 aa9.86□□□□□ -0.83
CPNE4-211ENST00000514439 ZNF330Q9Y3S2 320 aaPredicted RBP9.86□□□□□ -0.83
CPNE4-211ENST00000514439 KCNJ4P48050 445 aa9.85□□□□□ -0.83
CPNE4-211ENST00000514439 ATG9AQ7Z3C6 839 aa9.85□□□□□ -0.83
CPNE4-211ENST00000514439 ZNF589Q86UQ0 364 aaPredicted RBP9.85□□□□□ -0.83
CPNE4-211ENST00000514439 GAS2L3Q86XJ1 694 aa9.85□□□□□ -0.83
CPNE4-211ENST00000514439 DNAJC10Q8IXB1 793 aa9.85□□□□□ -0.83
CPNE4-211ENST00000514439 VSIG10Q8N0Z9 540 aa9.85□□□□□ -0.83
CPNE4-211ENST00000514439 LARP6Q9BRS8 491 aaKnown RBP9.85□□□□□ -0.83
CPNE4-211ENST00000514439 PANK2Q9BZ23 570 aa9.85□□□□□ -0.83
CPNE4-211ENST00000514439 GRPEL1Q9HAV7 217 aa9.85□□□□□ -0.83
CPNE4-211ENST00000514439 ZSWIM6Q9HCJ5 1215 aa9.85□□□□□ -0.83
CPNE4-211ENST00000514439 PRPF40AO75400 957 aaKnown RBP9.85□□□□□ -0.83
CPNE4-211ENST00000514439 ZKSCAN1P17029 563 aaPredicted RBP9.85□□□□□ -0.83
CPNE4-211ENST00000514439 VPS53Q5VIR6 699 aa9.85□□□□□ -0.83
CPNE4-211ENST00000514439 ISCA1Q9BUE6 129 aa9.85□□□□□ -0.83
CPNE4-211ENST00000514439 RTN4Q9NQC3 1192 aaKnown RBP9.85□□□□□ -0.83
CPNE4-211ENST00000514439 ATG3Q9NT62 314 aa9.85□□□□□ -0.83
CPNE4-211ENST00000514439 PDRG1Q9NUG6 133 aa9.85□□□□□ -0.83
CPNE4-211ENST00000514439 CYP46A1Q9Y6A2 500 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms