RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 SPDYE2BA6NHP3 402 aa25.87■■□□□ 1.73
USP53-208ENST00000514305 SPDYE6P0CI01 402 aa25.87■■□□□ 1.73
USP53-208ENST00000514305 APLP1P51693 650 aa25.87■■□□□ 1.73
USP53-208ENST00000514305 EXOSC9Q06265 439 aaKnown RBP25.87■■□□□ 1.73
USP53-208ENST00000514305 SPDYE2Q495Y8 402 aa25.87■■□□□ 1.73
USP53-208ENST00000514305 CDCA7LQ96GN5 454 aa25.87■■□□□ 1.73
USP53-208ENST00000514305 RRAGCQ9HB90 399 aa25.87■■□□□ 1.73
USP53-208ENST00000514305 DICER1Q9UPY3 1922 aaKnown RBP25.86■■□□□ 1.73
USP53-208ENST00000514305 C21orf2O43822 256 aa25.86■■□□□ 1.73
USP53-208ENST00000514305 EIF2S2P20042 333 aaKnown RBP25.86■■□□□ 1.73
USP53-208ENST00000514305 CCDC30Q5VVM6 783 aa25.86■■□□□ 1.73
USP53-208ENST00000514305 STYK1Q6J9G0 422 aa25.86■■□□□ 1.73
USP53-208ENST00000514305 ZNF428Q96B54 188 aa25.86■■□□□ 1.73
USP53-208ENST00000514305 NFKBIEO00221 500 aa25.85■■□□□ 1.73
USP53-208ENST00000514305 HDGFL1Q5TGJ6 251 aa25.85■■□□□ 1.73
USP53-208ENST00000514305 C8orf58Q8NAV2 365 aa25.85■■□□□ 1.73
USP53-208ENST00000514305 MASTLQ96GX5 879 aa25.85■■□□□ 1.73
USP53-208ENST00000514305 NIP7Q9Y221 180 aaKnown RBP eCLIP25.85■■□□□ 1.73
USP53-208ENST00000514305 SLX4Q8IY92 1834 aa25.85■■□□□ 1.73
USP53-208ENST00000514305 ELL2O00472 640 aaPredicted RBP25.84■■□□□ 1.73
USP53-208ENST00000514305 SRGNP10124 158 aa25.84■■□□□ 1.73
USP53-208ENST00000514305 TPTE2Q6XPS3 522 aa25.84■■□□□ 1.73
USP53-208ENST00000514305 STK31Q9BXU1 1019 aa25.83■■□□□ 1.73
USP53-208ENST00000514305 NUP98P52948 1817 aa25.82■■□□□ 1.72
USP53-208ENST00000514305 GLTPD2A6NH11 291 aa25.82■■□□□ 1.72
USP53-208ENST00000514305 PRELPP51888 382 aa25.82■■□□□ 1.72
USP53-208ENST00000514305 FSTL1Q12841 308 aa25.82■■□□□ 1.72
USP53-208ENST00000514305 SOGA3Q5TF21 947 aa25.82■■□□□ 1.72
USP53-208ENST00000514305 PRPF40BQ6NWY9 871 aaKnown RBP25.82■■□□□ 1.72
USP53-208ENST00000514305 WDR90Q96KV7 1748 aa25.81■■□□□ 1.72
USP53-208ENST00000514305 KRT24Q2M2I5 525 aa25.81■■□□□ 1.72
USP53-208ENST00000514305 DBF4Q9UBU7 674 aaPredicted RBP25.81■■□□□ 1.72
USP53-208ENST00000514305 TAOK3Q9H2K8 898 aa25.8■■□□□ 1.72
USP53-208ENST00000514305 FAM177BA6PVY3 158 aa25.79■■□□□ 1.72
USP53-208ENST00000514305 VAMP4O75379 141 aa25.79■■□□□ 1.72
USP53-208ENST00000514305 GTF2E1P29083 439 aaPredicted RBP25.79■■□□□ 1.72
USP53-208ENST00000514305 HLFQ16534 295 aa25.79■■□□□ 1.72
USP53-208ENST00000514305 DPY19L2Q6NUT2 758 aa25.79■■□□□ 1.72
USP53-208ENST00000514305 KIF6Q6ZMV9 814 aa25.79■■□□□ 1.72
USP53-208ENST00000514305 TSPYL6Q8N831 410 aa25.79■■□□□ 1.72
USP53-208ENST00000514305 LTBP3Q9NS15 1303 aa25.79■■□□□ 1.72
USP53-208ENST00000514305 VEGFAP15692 232 aaPredicted RBP25.78■■□□□ 1.72
USP53-208ENST00000514305 NPR1P16066 1061 aa25.78■■□□□ 1.72
USP53-208ENST00000514305 ERFEQ4G0M1 354 aa25.78■■□□□ 1.72
USP53-208ENST00000514305 DDX21Q9NR30 783 aaKnown RBP eCLIP25.78■■□□□ 1.72
USP53-208ENST00000514305 ERVV-1B6SEH8 477 aa25.77■■□□□ 1.72
USP53-208ENST00000514305 MYL6BP14649 208 aa25.77■■□□□ 1.72
USP53-208ENST00000514305 HYPKQ9NX55 129 aa25.77■■□□□ 1.72
USP53-208ENST00000514305 SMC1BQ8NDV3 1235 aa25.76■■□□□ 1.71
USP53-208ENST00000514305 NECTIN2Q92692 538 aa25.76■■□□□ 1.71
USP53-208ENST00000514305 NYXQ9GZU5 481 aa25.76■■□□□ 1.71
USP53-208ENST00000514305 MAP3K15Q6ZN16 1313 aa25.76■■□□□ 1.71
USP53-208ENST00000514305 KLRG2A4D1S0 409 aaPredicted RBP25.74■■□□□ 1.71
USP53-208ENST00000514305 ALDH1L2Q3SY69 923 aa25.73■■□□□ 1.71
USP53-208ENST00000514305 CCDC93Q567U6 631 aa25.73■■□□□ 1.71
USP53-208ENST00000514305 CHPF2Q9P2E5 772 aa25.72■■□□□ 1.71
USP53-208ENST00000514305 ALDH1B1P30837 517 aa25.71■■□□□ 1.71
USP53-208ENST00000514305 TTLL7Q6ZT98 887 aa25.71■■□□□ 1.71
USP53-208ENST00000514305 ZBTB3Q9H5J0 574 aa25.71■■□□□ 1.71
USP53-208ENST00000514305 PITPNM1O00562 1244 aa25.7■■□□□ 1.7
USP53-208ENST00000514305 DDX58O95786 925 aaKnown RBP25.69■■□□□ 1.7
USP53-208ENST00000514305 C7orf43Q8WVR3 580 aa25.69■■□□□ 1.7
USP53-208ENST00000514305 IBTKQ9P2D0 1353 aaPredicted RBP25.69■■□□□ 1.7
USP53-208ENST00000514305 GPTP24298 496 aa25.68■■□□□ 1.7
USP53-208ENST00000514305 NUTM1Q86Y26 1132 aa25.68■■□□□ 1.7
USP53-208ENST00000514305 DNAJC5GQ8N7S2 189 aa25.68■■□□□ 1.7
USP53-208ENST00000514305 ABCC12Q96J65 1359 aa25.68■■□□□ 1.7
USP53-208ENST00000514305 FKBP4Q02790 459 aaKnown RBP eCLIP25.67■■□□□ 1.7
USP53-208ENST00000514305 PDIA6Q15084 440 aa25.67■■□□□ 1.7
USP53-208ENST00000514305 RTKN2Q8IZC4 609 aa25.67■■□□□ 1.7
USP53-208ENST00000514305 GIGYF2Q6Y7W6 1299 aaKnown RBP25.66■■□□□ 1.7
USP53-208ENST00000514305 UBN2Q6ZU65 1347 aa25.65■■□□□ 1.7
USP53-208ENST00000514305 RIC1Q4ADV7 1423 aa25.65■■□□□ 1.7
USP53-208ENST00000514305 CRY2Q49AN0 593 aa25.65■■□□□ 1.7
USP53-208ENST00000514305 COPS6Q7L5N1 327 aa25.65■■□□□ 1.7
USP53-208ENST00000514305 RPGRQ92834 1020 aaKnown RBP25.65■■□□□ 1.7
USP53-208ENST00000514305 SMC4Q9NTJ3 1288 aa25.65■■□□□ 1.7
USP53-208ENST00000514305 POTECB2RU33 542 aa25.64■■□□□ 1.7
USP53-208ENST00000514305 HTRA3P83110 453 aa25.64■■□□□ 1.7
USP53-208ENST00000514305 AIMP1Q12904 312 aaKnown RBP25.64■■□□□ 1.7
USP53-208ENST00000514305 PPP1R42Q7Z4L9 355 aa25.64■■□□□ 1.7
USP53-208ENST00000514305 ANKRD36CQ5JPF3 1778 aa25.64■■□□□ 1.69
USP53-208ENST00000514305 DDNO94850 711 aaPredicted RBP25.63■■□□□ 1.69
USP53-208ENST00000514305 RARSP54136 660 aaKnown RBP25.63■■□□□ 1.69
USP53-208ENST00000514305 ZNF34Q8IZ26 560 aa25.63■■□□□ 1.69
USP53-208ENST00000514305 XAGE3Q8WTP9 111 aa25.63■■□□□ 1.69
USP53-208ENST00000514305 TCERG1O14776 1098 aaKnown RBP25.62■■□□□ 1.69
USP53-208ENST00000514305 ANXA1P04083 346 aa25.62■■□□□ 1.69
USP53-208ENST00000514305 PROSER3Q2NL68 480 aa25.62■■□□□ 1.69
USP53-208ENST00000514305 PARP10Q53GL7 1025 aa25.62■■□□□ 1.69
USP53-208ENST00000514305 SUSD4Q5VX71 490 aa25.62■■□□□ 1.69
USP53-208ENST00000514305 ANKRD13DQ6ZTN6 518 aa25.62■■□□□ 1.69
USP53-208ENST00000514305 SSH1Q8WYL5 1049 aa25.62■■□□□ 1.69
USP53-208ENST00000514305 KLRG1Q96E93 195 aa25.62■■□□□ 1.69
USP53-208ENST00000514305 ZNF277Q9NRM2 450 aaPredicted RBP25.62■■□□□ 1.69
USP53-208ENST00000514305 SSUH2Q9Y2M2 353 aa25.62■■□□□ 1.69
USP53-208ENST00000514305 SCN4AP35499 1836 aa25.62■■□□□ 1.69
USP53-208ENST00000514305 BRPF1P55201 1214 aaPredicted RBP25.61■■□□□ 1.69
USP53-208ENST00000514305 FLIIQ13045 1269 aa25.61■■□□□ 1.69
USP53-208ENST00000514305 HSP90AB3PQ58FF7 597 aa25.61■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms