RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, human

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM3-209	ENST00000514142	CCDC96	Q2M329	555 aa		11.9	□□□□□ -0.5
PDLIM3-209	ENST00000514142	WWC2	Q6AWC2	1192 aa		11.9	□□□□□ -0.5
PDLIM3-209	ENST00000514142	ARHGAP5	Q13017	1502 aa		11.9	□□□□□ -0.5
PDLIM3-209	ENST00000514142	ATAD2	Q6PL18	1390 aa		11.9	□□□□□ -0.5
PDLIM3-209	ENST00000514142	CTCFL	Q8NI51	663 aa	Predicted RBP	11.9	□□□□□ -0.5
PDLIM3-209	ENST00000514142	ERICH3	Q5RHP9	1530 aa		11.9	□□□□□ -0.5
PDLIM3-209	ENST00000514142	VGLL3	A8MV65	326 aa		11.9	□□□□□ -0.5
PDLIM3-209	ENST00000514142	IDE	P14735	1019 aa		11.9	□□□□□ -0.5
PDLIM3-209	ENST00000514142	KRBA2	Q6ZNG9	492 aa		11.9	□□□□□ -0.5
PDLIM3-209	ENST00000514142	LRRC2	Q9BYS8	371 aa		11.9	□□□□□ -0.5
PDLIM3-209	ENST00000514142	ZEB2	O60315	1214 aa		11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	KIF20A	O95235	890 aa		11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	RHOXF2B	P0C7M4	288 aa		11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	TRIM21	P19474	475 aa	Known RBP	11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	KARS	Q15046	597 aa	Known RBP	11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	MSL1	Q68DK7	614 aa		11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	MICU3	Q86XE3	530 aa		11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	RHOXF2	Q9BQY4	288 aa		11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	NLRP5	P59047	1200 aa		11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	NBPF11	Q86T75	865 aa		11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	HOOK3	Q86VS8	718 aa		11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	MYD88	Q99836	296 aa		11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	RANBP6	O60518	1105 aa	Known RBP	11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	POTEJ	P0CG39	1038 aa		11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	FLII	Q13045	1269 aa		11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	CCDC40	Q4G0X9	1142 aa		11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	SPTY2D1	Q68D10	685 aa	Predicted RBP	11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	C17orf53	Q8N3J3	647 aa	Predicted RBP	11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	MRPS27	Q92552	414 aa	Known RBP	11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	SERPINA10	Q9UK55	444 aa		11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	CCDC194	A0A1B0GVG4	234 aa		11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	OPA1	O60313	960 aa		11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	STRN4	Q9NRL3	753 aa		11.89	□□□□□ -0.51
PDLIM3-209	ENST00000514142	CTAGE9	A4FU28	777 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	DAPK1	P53355	1430 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	TCERG1L	Q5VWI1	586 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	CCDC121	Q6ZUS5	278 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	KLHL34	Q8N239	644 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	RIOK3	O14730	519 aa	Known RBP	11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	CCDC6	Q16204	474 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	SCLT1	Q96NL6	688 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	ESYT1	Q9BSJ8	1104 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	LZTFL1	Q9NQ48	299 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	AKAP2	Q9Y2D5	859 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	AFM	P43652	599 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	KANK3	Q6NY19	840 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	PPP1R42	Q7Z4L9	355 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	SEC63	Q9UGP8	760 aa	Known RBP	11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	EMILIN1	Q9Y6C2	1016 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	FSD2	A1L4K1	749 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	GOLIM4	O00461	696 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	TUBB4A	P04350	444 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	TRIM47	Q96LD4	638 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	TNN	Q9UQP3	1299 aa		11.88	□□□□□ -0.51
PDLIM3-209	ENST00000514142	PDE1A	P54750	535 aa		11.87	□□□□□ -0.51
PDLIM3-209	ENST00000514142	CAPZA3	Q96KX2	299 aa		11.87	□□□□□ -0.51
PDLIM3-209	ENST00000514142	TIAM1	Q13009	1591 aa		11.87	□□□□□ -0.51
PDLIM3-209	ENST00000514142	PTPRC	P08575	1304 aa		11.87	□□□□□ -0.51
PDLIM3-209	ENST00000514142	ANAPC15	P60006	121 aa		11.87	□□□□□ -0.51
PDLIM3-209	ENST00000514142	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	11.87	□□□□□ -0.51
PDLIM3-209	ENST00000514142	GBP6	Q6ZN66	633 aa		11.87	□□□□□ -0.51
PDLIM3-209	ENST00000514142	MARCKS	P29966	332 aa	Predicted RBP	11.87	□□□□□ -0.51
PDLIM3-209	ENST00000514142	CYLC1	P35663	651 aa	Predicted RBP	11.87	□□□□□ -0.51
PDLIM3-209	ENST00000514142	RRAGB	Q5VZM2	374 aa		11.87	□□□□□ -0.51
PDLIM3-209	ENST00000514142	PROSER2	Q86WR7	435 aa	Predicted RBP	11.87	□□□□□ -0.51
PDLIM3-209	ENST00000514142	SLC26A6	Q9BXS9	759 aa		11.87	□□□□□ -0.51
PDLIM3-209	ENST00000514142	IFNK	Q9P0W0	207 aa		11.87	□□□□□ -0.51
PDLIM3-209	ENST00000514142	METAP2	P50579	478 aa	Known RBP eCLIP	11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	C6orf163	Q5TEZ5	329 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	CCDC114	Q96M63	670 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	MBIP	Q9NS73	344 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	HMG20B	Q9P0W2	317 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	STAMBP	O95630	424 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	UBA7	P41226	1012 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	PIP4K2B	P78356	416 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	KIAA0753	Q2KHM9	967 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	IQCA1	Q86XH1	822 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	DNAJC5B	Q9UF47	199 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142		A0A1B0GUL7	405 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	CCDC155	Q8N6L0	562 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	KCNG4	Q8TDN1	519 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	MEIS3	Q99687	375 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	SNRK	Q9NRH2	765 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	MAP3K1	Q13233	1512 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	EVC	P57679	992 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	TMEM67	Q5HYA8	995 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	RAB34	Q9BZG1	259 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	MKNK2	Q9HBH9	465 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	PRX	Q9BXM0	1461 aa		11.86	□□□□□ -0.51
PDLIM3-209	ENST00000514142	DES	P17661	470 aa		11.85	□□□□□ -0.51
PDLIM3-209	ENST00000514142	TMEM266	Q2M3C6	531 aa		11.85	□□□□□ -0.51
PDLIM3-209	ENST00000514142	ZNF569	Q5MCW4	686 aa		11.85	□□□□□ -0.51
PDLIM3-209	ENST00000514142	FAM114A1	Q8IWE2	563 aa		11.85	□□□□□ -0.51
PDLIM3-209	ENST00000514142	MYRIP	Q8NFW9	859 aa		11.85	□□□□□ -0.51
PDLIM3-209	ENST00000514142	ERO1A	Q96HE7	468 aa		11.85	□□□□□ -0.51
PDLIM3-209	ENST00000514142	PAIP2	Q9BPZ3	127 aa	Known RBP	11.85	□□□□□ -0.51
PDLIM3-209	ENST00000514142	EHBP1L1	Q8N3D4	1523 aa		11.85	□□□□□ -0.51
PDLIM3-209	ENST00000514142	FAM83G	A6ND36	823 aa		11.85	□□□□□ -0.51
PDLIM3-209	ENST00000514142	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	11.85	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms