RNA–Protein interactions for RNA: ENST00000513996.5

HERC4-214, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 944 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-214ENST00000513996 TSPYL6Q8N831 410 aa11.35□□□□□ -0.59
HERC4-214ENST00000513996 C7orf43Q8WVR3 580 aa11.35□□□□□ -0.59
HERC4-214ENST00000513996 CNKSR1Q969H4 720 aa11.35□□□□□ -0.59
HERC4-214ENST00000513996 RNF181Q9P0P0 153 aa11.35□□□□□ -0.59
HERC4-214ENST00000513996 ABCC12Q96J65 1359 aa11.35□□□□□ -0.59
HERC4-214ENST00000513996 KIF3CO14782 793 aa11.34□□□□□ -0.59
HERC4-214ENST00000513996 NPR1P16066 1061 aa11.34□□□□□ -0.59
HERC4-214ENST00000513996 GTF2E1P29083 439 aaPredicted RBP11.34□□□□□ -0.59
HERC4-214ENST00000513996 CALD1Q05682 793 aaKnown RBP11.34□□□□□ -0.59
HERC4-214ENST00000513996 TCIRG1Q13488 830 aa11.34□□□□□ -0.59
HERC4-214ENST00000513996 CCDC27Q2M243 656 aa11.34□□□□□ -0.59
HERC4-214ENST00000513996 PRPF40BQ6NWY9 871 aaKnown RBP11.34□□□□□ -0.59
HERC4-214ENST00000513996 OLFM4Q6UX06 510 aa11.34□□□□□ -0.59
HERC4-214ENST00000513996 ZNF428Q96B54 188 aa11.34□□□□□ -0.59
HERC4-214ENST00000513996 NYXQ9GZU5 481 aa11.34□□□□□ -0.59
HERC4-214ENST00000513996 SALL2Q9Y467 1007 aaPredicted RBP11.34□□□□□ -0.59
HERC4-214ENST00000513996 SLX4Q8IY92 1834 aa11.34□□□□□ -0.59
HERC4-214ENST00000513996 COL11A2P13942 1736 aaPredicted RBP11.34□□□□□ -0.59
HERC4-214ENST00000513996 DLEC1Q9Y238 1755 aa11.33□□□□□ -0.59
HERC4-214ENST00000513996 ANKRD13DQ6ZTN6 518 aa11.33□□□□□ -0.6
HERC4-214ENST00000513996 TSR2Q969E8 191 aaKnown RBP11.33□□□□□ -0.6
HERC4-214ENST00000513996 DBF4Q9UBU7 674 aaPredicted RBP11.33□□□□□ -0.6
HERC4-214ENST00000513996 SBF1O95248 1867 aa11.32□□□□□ -0.6
HERC4-214ENST00000513996 LMNB1P20700 586 aa11.32□□□□□ -0.6
HERC4-214ENST00000513996 CRY2Q49AN0 593 aa11.32□□□□□ -0.6
HERC4-214ENST00000513996 PARP10Q53GL7 1025 aa11.32□□□□□ -0.6
HERC4-214ENST00000513996 SLC10A5Q5PT55 438 aa11.32□□□□□ -0.6
HERC4-214ENST00000513996 SLC51AQ86UW1 340 aa11.32□□□□□ -0.6
HERC4-214ENST00000513996 NLRP10Q86W26 655 aa11.32□□□□□ -0.6
HERC4-214ENST00000513996 FAM9BQ8IZU0 186 aa11.32□□□□□ -0.6
HERC4-214ENST00000513996 PLBD2Q8NHP8 589 aa11.32□□□□□ -0.6
HERC4-214ENST00000513996 UTP14AQ9BVJ6 771 aaKnown RBP11.32□□□□□ -0.6
HERC4-214ENST00000513996 PHAXQ9H814 394 aaKnown RBP11.32□□□□□ -0.6
HERC4-214ENST00000513996 NMRK2Q9NPI5 230 aa11.32□□□□□ -0.6
HERC4-214ENST00000513996 IBTKQ9P2D0 1353 aaPredicted RBP11.31□□□□□ -0.6
HERC4-214ENST00000513996 PPP1R42Q7Z4L9 355 aa11.31□□□□□ -0.6
HERC4-214ENST00000513996 ISCA1Q9BUE6 129 aa11.31□□□□□ -0.6
HERC4-214ENST00000513996 HYPKQ9NX55 129 aa11.31□□□□□ -0.6
HERC4-214ENST00000513996 ATP5J2-PTCD1G3V325 749 aa11.3□□□□□ -0.6
HERC4-214ENST00000513996 TCERG1O14776 1098 aaKnown RBP11.3□□□□□ -0.6
HERC4-214ENST00000513996 HOXA10P31260 410 aaPredicted RBP11.3□□□□□ -0.6
HERC4-214ENST00000513996 HSP90AB3PQ58FF7 597 aa11.3□□□□□ -0.6
HERC4-214ENST00000513996 IL16Q14005 1332 aa11.3□□□□□ -0.6
HERC4-214ENST00000513996 TNRC6CQ9HCJ0 1690 aaKnown RBP11.3□□□□□ -0.6
HERC4-214ENST00000513996 HCLS1P14317 486 aaPredicted RBP11.29□□□□□ -0.6
HERC4-214ENST00000513996 ALDH1B1P30837 517 aa11.29□□□□□ -0.6
HERC4-214ENST00000513996 LTBP3Q9NS15 1303 aa11.29□□□□□ -0.6
HERC4-214ENST00000513996 RIC1Q4ADV7 1423 aa11.28□□□□□ -0.6
HERC4-214ENST00000513996 GLTPD2A6NH11 291 aa11.28□□□□□ -0.6
HERC4-214ENST00000513996 CCDC93Q567U6 631 aa11.28□□□□□ -0.6
HERC4-214ENST00000513996 CCDC30Q5VVM6 783 aa11.28□□□□□ -0.6
HERC4-214ENST00000513996 WDR63Q8IWG1 891 aa11.28□□□□□ -0.6
HERC4-214ENST00000513996 NLRP3Q96P20 1036 aa11.28□□□□□ -0.6
HERC4-214ENST00000513996 CRAMP1Q96RY5 1269 aa11.28□□□□□ -0.6
HERC4-214ENST00000513996 TAOK3Q9H2K8 898 aa11.28□□□□□ -0.6
HERC4-214ENST00000513996 RRAGCQ9HB90 399 aa11.28□□□□□ -0.6
HERC4-214ENST00000513996 TRMT112Q9UI30 125 aaKnown RBP11.28□□□□□ -0.6
HERC4-214ENST00000513996 FER1L6Q2WGJ9 1857 aa11.27□□□□□ -0.6
HERC4-214ENST00000513996 TRIM28Q13263 835 aaKnown RBP11.27□□□□□ -0.61
HERC4-214ENST00000513996 TWISTNBQ3B726 338 aaPredicted RBP11.27□□□□□ -0.61
HERC4-214ENST00000513996 SOGA3Q5TF21 947 aa11.27□□□□□ -0.61
HERC4-214ENST00000513996 G2E3Q7L622 706 aa11.27□□□□□ -0.61
HERC4-214ENST00000513996 RIC3Q7Z5B4 369 aa11.27□□□□□ -0.61
HERC4-214ENST00000513996 RPGRQ92834 1020 aaKnown RBP11.27□□□□□ -0.61
HERC4-214ENST00000513996 FAM89AQ96GI7 184 aa11.27□□□□□ -0.61
HERC4-214ENST00000513996 ZNF277Q9NRM2 450 aaPredicted RBP11.27□□□□□ -0.61
HERC4-214ENST00000513996 SSUH2Q9Y2M2 353 aa11.27□□□□□ -0.61
HERC4-214ENST00000513996 FANCIQ9NVI1 1328 aa11.27□□□□□ -0.61
HERC4-214ENST00000513996 CCDC88AQ3V6T2 1871 aa11.27□□□□□ -0.61
HERC4-214ENST00000513996 SNED1Q8TER0 1413 aa11.26□□□□□ -0.61
HERC4-214ENST00000513996 POTECB2RU33 542 aa11.26□□□□□ -0.61
HERC4-214ENST00000513996 VAMP4O75379 141 aa11.26□□□□□ -0.61
HERC4-214ENST00000513996 FKBP4Q02790 459 aaKnown RBP eCLIP11.26□□□□□ -0.61
HERC4-214ENST00000513996 EXOSC9Q06265 439 aaKnown RBP11.26□□□□□ -0.61
HERC4-214ENST00000513996 RTL5Q5HYW3 569 aaPredicted RBP11.26□□□□□ -0.61
HERC4-214ENST00000513996 RTKN2Q8IZC4 609 aa11.26□□□□□ -0.61
HERC4-214ENST00000513996 RBM17Q96I25 401 aaKnown RBP11.26□□□□□ -0.61
HERC4-214ENST00000513996 SH3TC1Q8TE82 1336 aa11.26□□□□□ -0.61
HERC4-214ENST00000513996 ZC3H4Q9UPT8 1303 aaKnown RBP11.26□□□□□ -0.61
HERC4-214ENST00000513996 CACNA1SQ13698 1873 aa11.25□□□□□ -0.61
HERC4-214ENST00000513996 GOLGA2Q08379 1002 aa11.25□□□□□ -0.61
HERC4-214ENST00000513996 REM2Q8IYK8 340 aaPredicted RBP11.25□□□□□ -0.61
HERC4-214ENST00000513996 JARID2Q92833 1246 aaPredicted RBP11.25□□□□□ -0.61
HERC4-214ENST00000513996 MYD88Q99836 296 aa11.25□□□□□ -0.61
HERC4-214ENST00000513996 METTL22Q9BUU2 404 aaPredicted RBP11.25□□□□□ -0.61
HERC4-214ENST00000513996 ABCC4O15439 1325 aa11.25□□□□□ -0.61
HERC4-214ENST00000513996 RNF123Q5XPI4 1314 aa11.25□□□□□ -0.61
HERC4-214ENST00000513996 KDM2BQ8NHM5 1336 aa11.25□□□□□ -0.61
HERC4-214ENST00000513996 ARFGEF2Q9Y6D5 1785 aa11.25□□□□□ -0.61
HERC4-214ENST00000513996 PPEF1O14829 653 aaPredicted RBP11.24□□□□□ -0.61
HERC4-214ENST00000513996 TOMM70O94826 608 aa11.24□□□□□ -0.61
HERC4-214ENST00000513996 DDNO94850 711 aaPredicted RBP11.24□□□□□ -0.61
HERC4-214ENST00000513996 MAP3K2Q9Y2U5 619 aa11.24□□□□□ -0.61
HERC4-214ENST00000513996 ZNF521Q96K83 1311 aa11.24□□□□□ -0.61
HERC4-214ENST00000513996 ANKRD36CQ5JPF3 1778 aa11.23□□□□□ -0.61
HERC4-214ENST00000513996 PI4KAP2A4QPH2 592 aa11.23□□□□□ -0.61
HERC4-214ENST00000513996 IRS4O14654 1257 aaPredicted RBP11.23□□□□□ -0.61
HERC4-214ENST00000513996 IGKV5-2P06315 115 aa11.23□□□□□ -0.61
HERC4-214ENST00000513996 SF3B3Q15393 1217 aaKnown RBP11.23□□□□□ -0.61
HERC4-214ENST00000513996 CC2D2BQ6DHV5 1058 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms