RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 CCDC148Q8NFR7 591 aa4.93□□□□□ -1.62
VCAN-209ENST00000513016 NAP1L4Q99733 375 aaKnown RBP4.93□□□□□ -1.62
VCAN-209ENST00000513016 ECHDC1Q9NTX5 307 aa4.93□□□□□ -1.62
VCAN-209ENST00000513016 SAMM50Q9Y512 469 aa4.93□□□□□ -1.62
VCAN-209ENST00000513016 GPATCH8Q9UKJ3 1502 aaKnown RBP4.93□□□□□ -1.62
VCAN-209ENST00000513016 FKBP15Q5T1M5 1219 aa4.93□□□□□ -1.62
VCAN-209ENST00000513016 LRSAM1Q6UWE0 723 aa4.93□□□□□ -1.62
VCAN-209ENST00000513016 GPHNQ9NQX3 736 aaPredicted RBP4.93□□□□□ -1.62
VCAN-209ENST00000513016 XAGE3Q8WTP9 111 aa4.93□□□□□ -1.62
VCAN-209ENST00000513016 CABLES1Q8TDN4 633 aa4.93□□□□□ -1.62
VCAN-209ENST00000513016 CCDC8Q9H0W5 538 aaPredicted RBP4.93□□□□□ -1.62
VCAN-209ENST00000513016 SH2B1Q9NRF2 756 aaPredicted RBP4.93□□□□□ -1.62
VCAN-209ENST00000513016 NOD1Q9Y239 953 aa4.93□□□□□ -1.62
VCAN-209ENST00000513016 PTPN23Q9H3S7 1636 aa4.93□□□□□ -1.62
VCAN-209ENST00000513016 PABPC4Q13310 644 aaKnown RBP eCLIP4.93□□□□□ -1.62
VCAN-209ENST00000513016 FAM98CQ17RN3 349 aaKnown RBP4.93□□□□□ -1.62
VCAN-209ENST00000513016 TEX35Q5T0J7 233 aa4.93□□□□□ -1.62
VCAN-209ENST00000513016 ESR2Q92731 530 aa4.93□□□□□ -1.62
VCAN-209ENST00000513016 PABPN1LA6NDY0 278 aaKnown RBP4.92□□□□□ -1.62
VCAN-209ENST00000513016 EZRP15311 586 aaKnown RBP4.92□□□□□ -1.62
VCAN-209ENST00000513016 HSP90B2PQ58FF3 399 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 COPS6Q7L5N1 327 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 TAF4BQ92750 862 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 QTRT2Q9H974 415 aaKnown RBP4.92□□□□□ -1.62
VCAN-209ENST00000513016 ANKRD62A6NC57 917 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 IRS4O14654 1257 aaPredicted RBP4.92□□□□□ -1.62
VCAN-209ENST00000513016 BMP15O95972 392 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 LDHBP07195 334 aaKnown RBP4.92□□□□□ -1.62
VCAN-209ENST00000513016 ANAPC15P60006 121 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 KSR2Q6VAB6 950 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 CCDC117Q8IWD4 279 aaPredicted RBP4.92□□□□□ -1.62
VCAN-209ENST00000513016 GGA1Q9UJY5 639 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 DENND2AQ9ULE3 1009 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 F8W031 263 aaPredicted RBP4.92□□□□□ -1.62
VCAN-209ENST00000513016 CALM1P0DP23 149 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 CALM2P0DP24 149 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 CALM3P0DP25 149 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 EIF5P55010 431 aaKnown RBP4.92□□□□□ -1.62
VCAN-209ENST00000513016 TMEM67Q5HYA8 995 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 ZNF408Q9H9D4 720 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 SPC25Q9HBM1 224 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 PEG3Q9GZU2 1588 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 SSR1P43307 286 aaKnown RBP4.92□□□□□ -1.62
VCAN-209ENST00000513016 SLFN5Q08AF3 891 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 CCDC174Q6PII3 467 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 FAM196AQ6ZSG2 479 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 NCOA7Q8NI08 942 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 SMARCC2Q8TAQ2 1214 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 EXOC6BQ9Y2D4 811 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 RAPGEF6Q8TEU7 1601 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 YEATS2Q9ULM3 1422 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 DKC1O60832 514 aaKnown RBP eCLIP4.92□□□□□ -1.62
VCAN-209ENST00000513016 BMS1Q14692 1282 aaKnown RBP4.92□□□□□ -1.62
VCAN-209ENST00000513016 DPP8Q6V1X1 898 aaPredicted RBP4.92□□□□□ -1.62
VCAN-209ENST00000513016 C8orf76Q96K31 380 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 TRIM5Q9C035 493 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 BABAM1Q9NWV8 329 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 PI4KAP2A4QPH2 592 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 STX6O43752 255 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 PLS1Q14651 629 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 TAF12Q16514 161 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 PI4KAP1Q8N8J0 262 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 WDR62O43379 1518 aa4.92□□□□□ -1.62
VCAN-209ENST00000513016 RIMBP2O15034 1052 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 CCDC192P0DO97 292 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 CEBPZQ03701 1054 aaKnown RBP4.91□□□□□ -1.62
VCAN-209ENST00000513016 IQCEQ6IPM2 695 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 USP48Q86UV5 1035 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 CNKSR1Q969H4 720 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 UBA5Q9GZZ9 404 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 ARHGEF10LQ9HCE6 1279 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 VAT1LQ9HCJ6 419 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 C6orf50Q9HD87 102 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 HMG20BQ9P0W2 317 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 MAGEB6P1A0A0J9YX57 407 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 SYCP3Q8IZU3 236 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 SPATA32Q96LK8 384 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 TNMDQ9H2S6 317 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 GOLIM4O00461 696 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 IARSP41252 1262 aaKnown RBP4.91□□□□□ -1.62
VCAN-209ENST00000513016 TNFAIP1Q13829 316 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 TMEM57Q8N5G2 664 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 CDCA7LQ96GN5 454 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 NUP160Q12769 1436 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 TBCAO75347 108 aaKnown RBP4.91□□□□□ -1.62
VCAN-209ENST00000513016 BICD1Q96G01 975 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 THUMPD2Q9BTF0 503 aaKnown RBP4.91□□□□□ -1.62
VCAN-209ENST00000513016 YTHDC2Q9H6S0 1430 aaKnown RBP4.91□□□□□ -1.62
VCAN-209ENST00000513016 NEO1Q92859 1461 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 GBP2P32456 591 aaPredicted RBP4.91□□□□□ -1.62
VCAN-209ENST00000513016 PICALMQ13492 652 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 NLGN1Q8N2Q7 840 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 AS3MTQ9HBK9 375 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 PCF11O94913 1555 aaKnown RBP4.91□□□□□ -1.62
VCAN-209ENST00000513016 THOC2Q8NI27 1593 aaKnown RBP4.91□□□□□ -1.62
VCAN-209ENST00000513016 ZBTB24O43167 697 aaPredicted RBP4.91□□□□□ -1.62
VCAN-209ENST00000513016 FIBPO43427 364 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 LIG1P18858 919 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 ARHGAP27Q6ZUM4 889 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 CSADQ9Y600 493 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms