RNA–Protein interactions for RNA: ENST00000512813.5

CLCN3-208, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 4

Gene CLCN3, Length 563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-208ENST00000512813 CDHR2Q9BYE9 1310 aa13.14□□□□□ -0.31
CLCN3-208ENST00000512813 PPM1GO15355 546 aaPredicted RBP13.14□□□□□ -0.31
CLCN3-208ENST00000512813 CANXP27824 592 aaKnown RBP13.14□□□□□ -0.31
CLCN3-208ENST00000512813 AMOTQ4VCS5 1084 aa13.13□□□□□ -0.31
CLCN3-208ENST00000512813 LARGE2Q8N3Y3 721 aa13.13□□□□□ -0.31
CLCN3-208ENST00000512813 C2orf69Q8N8R5 385 aa13.13□□□□□ -0.31
CLCN3-208ENST00000512813 COL25A1Q9BXS0 654 aaPredicted RBP13.13□□□□□ -0.31
CLCN3-208ENST00000512813 MRC1P22897 1456 aa13.12□□□□□ -0.31
CLCN3-208ENST00000512813 H0YGN5 161 aa13.12□□□□□ -0.31
CLCN3-208ENST00000512813 GPR25O00155 361 aa13.12□□□□□ -0.31
CLCN3-208ENST00000512813 HIRAP54198 1017 aaPredicted RBP13.12□□□□□ -0.31
CLCN3-208ENST00000512813 CHRDL2Q6WN34 429 aa13.12□□□□□ -0.31
CLCN3-208ENST00000512813 VSIG10Q8N0Z9 540 aa13.12□□□□□ -0.31
CLCN3-208ENST00000512813 UBR2Q8IWV8 1755 aa13.12□□□□□ -0.31
CLCN3-208ENST00000512813 NPC1L1Q9UHC9 1359 aa13.11□□□□□ -0.31
CLCN3-208ENST00000512813 ALDH1B1P30837 517 aa13.11□□□□□ -0.31
CLCN3-208ENST00000512813 C1orf141Q5JVX7 400 aa13.11□□□□□ -0.31
CLCN3-208ENST00000512813 CC2D2BQ6DHV5 1058 aa13.11□□□□□ -0.31
CLCN3-208ENST00000512813 USP48Q86UV5 1035 aa13.11□□□□□ -0.31
CLCN3-208ENST00000512813 NIM1KQ8IY84 436 aa13.11□□□□□ -0.31
CLCN3-208ENST00000512813 TRPM4Q8TD43 1214 aa13.11□□□□□ -0.31
CLCN3-208ENST00000512813 RBM27Q9P2N5 1060 aaKnown RBP13.11□□□□□ -0.31
CLCN3-208ENST00000512813 TBC1D8O95759 1140 aa13.1□□□□□ -0.31
CLCN3-208ENST00000512813 EN2P19622 333 aaPredicted RBP13.1□□□□□ -0.31
CLCN3-208ENST00000512813 GMPSP49915 693 aaPredicted RBP13.1□□□□□ -0.31
CLCN3-208ENST00000512813 EIF4A2Q14240 407 aaKnown RBP13.1□□□□□ -0.31
CLCN3-208ENST00000512813 DLK2Q6UY11 383 aa13.1□□□□□ -0.31
CLCN3-208ENST00000512813 TBC1D2BQ9UPU7 963 aa13.1□□□□□ -0.31
CLCN3-208ENST00000512813 LAMA3Q16787 3333 aa13.1□□□□□ -0.31
CLCN3-208ENST00000512813 NBPF5PQ86XG9 351 aaPredicted RBP13.09□□□□□ -0.31
CLCN3-208ENST00000512813 RASAL3Q86YV0 1011 aa13.09□□□□□ -0.31
CLCN3-208ENST00000512813 SLC52A2Q9HAB3 445 aa13.09□□□□□ -0.31
CLCN3-208ENST00000512813 CAMTA2O94983 1202 aa13.08□□□□□ -0.32
CLCN3-208ENST00000512813 GRIPAP1Q4V328 841 aa13.08□□□□□ -0.32
CLCN3-208ENST00000512813 FKTNO75072 461 aa13.07□□□□□ -0.32
CLCN3-208ENST00000512813 STARD3NLO95772 234 aa13.07□□□□□ -0.32
CLCN3-208ENST00000512813 CXCL9Q07325 125 aa13.07□□□□□ -0.32
CLCN3-208ENST00000512813 SLC39A6Q13433 755 aa13.07□□□□□ -0.32
CLCN3-208ENST00000512813 CARD11Q9BXL7 1154 aa13.07□□□□□ -0.32
CLCN3-208ENST00000512813 IL6STP40189 918 aaPredicted RBP13.06□□□□□ -0.32
CLCN3-208ENST00000512813 KRT26Q7Z3Y9 468 aa13.06□□□□□ -0.32
CLCN3-208ENST00000512813 CFHR5Q9BXR6 569 aa13.06□□□□□ -0.32
CLCN3-208ENST00000512813 PRO3102Q9H379 93 aa13.06□□□□□ -0.32
CLCN3-208ENST00000512813 ARMC5Q96C12 935 aa13.05□□□□□ -0.32
CLCN3-208ENST00000512813 TESK2Q96S53 571 aa13.05□□□□□ -0.32
CLCN3-208ENST00000512813 ZNRF3Q9ULT6 936 aa13.05□□□□□ -0.32
CLCN3-208ENST00000512813 VCANP13611 3396 aa13.04□□□□□ -0.32
CLCN3-208ENST00000512813 PPIP5K2O43314 1243 aa13.04□□□□□ -0.32
CLCN3-208ENST00000512813 BCL2L13Q9BXK5 485 aa13.04□□□□□ -0.32
CLCN3-208ENST00000512813 VPS33BQ9H267 617 aa13.04□□□□□ -0.32
CLCN3-208ENST00000512813 PRDM6Q9NQX0 595 aa13.04□□□□□ -0.32
CLCN3-208ENST00000512813 POLKQ9UBT6 870 aa13.04□□□□□ -0.32
CLCN3-208ENST00000512813 ZNF330Q9Y3S2 320 aaPredicted RBP13.04□□□□□ -0.32
CLCN3-208ENST00000512813 SPTBN5Q9NRC6 3674 aaKnown RBP13.03□□□□□ -0.32
CLCN3-208ENST00000512813 ADM5C9JUS6 153 aa13.03□□□□□ -0.32
CLCN3-208ENST00000512813 CRY2Q49AN0 593 aa13.03□□□□□ -0.32
CLCN3-208ENST00000512813 TM4SF4P48230 202 aa13.02□□□□□ -0.33
CLCN3-208ENST00000512813 AOC3Q16853 763 aa13.02□□□□□ -0.33
CLCN3-208ENST00000512813 TPTE2Q6XPS3 522 aa13.02□□□□□ -0.33
CLCN3-208ENST00000512813 OTOP1Q7RTM1 612 aa13.02□□□□□ -0.33
CLCN3-208ENST00000512813 CNOT7Q9UIV1 285 aaKnown RBP13.02□□□□□ -0.33
CLCN3-208ENST00000512813 TRIM17Q9Y577 477 aa13.02□□□□□ -0.33
CLCN3-208ENST00000512813 RIC1Q4ADV7 1423 aa13.02□□□□□ -0.33
CLCN3-208ENST00000512813 A0A1W2PPC1 479 aa13.01□□□□□ -0.33
CLCN3-208ENST00000512813 SHTN1A0MZ66 631 aa13.01□□□□□ -0.33
CLCN3-208ENST00000512813 H7C1D1 291 aa13.01□□□□□ -0.33
CLCN3-208ENST00000512813 CLEC4GQ6UXB4 293 aa13.01□□□□□ -0.33
CLCN3-208ENST00000512813 POLR2AP24928 1970 aaKnown RBP13.01□□□□□ -0.33
CLCN3-208ENST00000512813 TTC28Q96AY4 2481 aa13□□□□□ -0.33
CLCN3-208ENST00000512813 SOX1O00570 391 aaPredicted RBP13□□□□□ -0.33
CLCN3-208ENST00000512813 TNIP1Q15025 636 aa13□□□□□ -0.33
CLCN3-208ENST00000512813 DZIP3Q86Y13 1208 aaKnown RBP13□□□□□ -0.33
CLCN3-208ENST00000512813 MICALL2Q8IY33 904 aa13□□□□□ -0.33
CLCN3-208ENST00000512813 TMEM106CQ9BVX2 250 aa13□□□□□ -0.33
CLCN3-208ENST00000512813 STXBP5LQ9Y2K9 1186 aa13□□□□□ -0.33
CLCN3-208ENST00000512813 PTPN22Q9Y2R2 807 aa13□□□□□ -0.33
CLCN3-208ENST00000512813 ZNF609O15014 1411 aa12.99□□□□□ -0.33
CLCN3-208ENST00000512813 KIF7Q2M1P5 1343 aa12.99□□□□□ -0.33
CLCN3-208ENST00000512813 FKBP1BP68106 108 aa12.99□□□□□ -0.33
CLCN3-208ENST00000512813 NPM2Q86SE8 214 aaKnown RBP12.99□□□□□ -0.33
CLCN3-208ENST00000512813 SLC51AQ86UW1 340 aa12.99□□□□□ -0.33
CLCN3-208ENST00000512813 AEBP1Q8IUX7 1158 aa12.99□□□□□ -0.33
CLCN3-208ENST00000512813 DCPSQ96C86 337 aaKnown RBP12.99□□□□□ -0.33
CLCN3-208ENST00000512813 R3HDMLQ9H3Y0 253 aa12.99□□□□□ -0.33
CLCN3-208ENST00000512813 LGR6Q9HBX8 967 aa12.99□□□□□ -0.33
CLCN3-208ENST00000512813 HEG1Q9ULI3 1381 aa12.98□□□□□ -0.33
CLCN3-208ENST00000512813 SLC24A1O60721 1099 aa12.98□□□□□ -0.33
CLCN3-208ENST00000512813 HOXA10P31260 410 aaPredicted RBP12.98□□□□□ -0.33
CLCN3-208ENST00000512813 SAMD7Q7Z3H4 446 aa12.98□□□□□ -0.33
CLCN3-208ENST00000512813 LRCH3Q96II8 777 aa12.98□□□□□ -0.33
CLCN3-208ENST00000512813 TEX13AQ9BXU3 409 aaPredicted RBP12.98□□□□□ -0.33
CLCN3-208ENST00000512813 ZNF652Q9Y2D9 606 aa12.98□□□□□ -0.33
CLCN3-208ENST00000512813 ERBB4Q15303 1308 aa12.97□□□□□ -0.33
CLCN3-208ENST00000512813 RNMTO43148 476 aaKnown RBP12.97□□□□□ -0.33
CLCN3-208ENST00000512813 RAD17O75943 681 aa12.97□□□□□ -0.33
CLCN3-208ENST00000512813 ANKRD13DQ6ZTN6 518 aa12.97□□□□□ -0.33
CLCN3-208ENST00000512813 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.97□□□□□ -0.33
CLCN3-208ENST00000512813 MPNDQ8N594 471 aa12.97□□□□□ -0.33
CLCN3-208ENST00000512813 DPF2Q92785 391 aa12.97□□□□□ -0.33
CLCN3-208ENST00000512813 CDCA5Q96FF9 252 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms