RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 SH2D4AQ9H788 454 aa10.24□□□□□ -0.77
VCAN-208ENST00000512590 ZBTB16Q05516 673 aa10.24□□□□□ -0.77
VCAN-208ENST00000512590 PPFIA1Q13136 1202 aa10.24□□□□□ -0.77
VCAN-208ENST00000512590 PLCB4Q15147 1175 aa10.24□□□□□ -0.77
VCAN-208ENST00000512590 DDX12PQ92771 950 aa10.24□□□□□ -0.77
VCAN-208ENST00000512590 TMEM106CQ9BVX2 250 aa10.24□□□□□ -0.77
VCAN-208ENST00000512590 CCDC87Q9NVE4 849 aa10.24□□□□□ -0.77
VCAN-208ENST00000512590 WDR46O15213 610 aaKnown RBP10.24□□□□□ -0.77
VCAN-208ENST00000512590 GJC1P36383 396 aa10.24□□□□□ -0.77
VCAN-208ENST00000512590 RTCBQ9Y3I0 505 aaKnown RBP10.24□□□□□ -0.77
VCAN-208ENST00000512590 H7C1D1 291 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 XPAP23025 273 aaPredicted RBP10.23□□□□□ -0.77
VCAN-208ENST00000512590 FAM177A1Q8N128 213 aaPredicted RBP10.23□□□□□ -0.77
VCAN-208ENST00000512590 CRNKL1Q9BZJ0 848 aaKnown RBP10.23□□□□□ -0.77
VCAN-208ENST00000512590 MAP10Q9P2G4 905 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 MSH6P52701 1360 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 KIF15Q9NS87 1388 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 HMGB1P1B2RPK0 211 aaPredicted RBP10.23□□□□□ -0.77
VCAN-208ENST00000512590 CCDC172P0C7W6 258 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 PDE6BP35913 854 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 DAPK3O43293 454 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 GIMAP7Q8NHV1 300 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 CLIP2Q9UDT6 1046 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 PRPF40AO75400 957 aaKnown RBP10.23□□□□□ -0.77
VCAN-208ENST00000512590 CCT6AP40227 531 aaKnown RBP10.23□□□□□ -0.77
VCAN-208ENST00000512590 TMEM132EQ6IEE7 984 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 DDX11Q96FC9 970 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 LRRC27Q9C0I9 530 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 C6orf50Q9HD87 102 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 CSADQ9Y600 493 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 FMN1Q68DA7 1419 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 TTC36A6NLP5 189 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 TSPY3P0CV98 308 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 TSPY8P0CW00 308 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 CALM1P0DP23 149 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 CALM2P0DP24 149 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 CALM3P0DP25 149 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 IDEP14735 1019 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 AKNAD1Q5T1N1 836 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 SULT6B1Q6IMI4 303 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 WAPLQ7Z5K2 1190 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 NYXQ9GZU5 481 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 SYNDIG1Q9H7V2 258 aa10.23□□□□□ -0.77
VCAN-208ENST00000512590 SLC4A2P04920 1241 aa10.22□□□□□ -0.77
VCAN-208ENST00000512590 RBM17Q96I25 401 aaKnown RBP10.22□□□□□ -0.77
VCAN-208ENST00000512590 LNPKQ9C0E8 428 aa10.22□□□□□ -0.77
VCAN-208ENST00000512590 SLC7A5P2Q9GIP4 190 aa10.22□□□□□ -0.77
VCAN-208ENST00000512590 TCP11L1Q9NUJ3 509 aa10.22□□□□□ -0.77
VCAN-208ENST00000512590 TMCO3Q6UWJ1 677 aa10.22□□□□□ -0.77
VCAN-208ENST00000512590 AEBP1Q8IUX7 1158 aa10.22□□□□□ -0.77
VCAN-208ENST00000512590 DCPSQ96C86 337 aaKnown RBP10.22□□□□□ -0.77
VCAN-208ENST00000512590 PPME1Q9Y570 386 aa10.22□□□□□ -0.77
VCAN-208ENST00000512590 SLC12A7Q9Y666 1083 aa10.22□□□□□ -0.77
VCAN-208ENST00000512590 GOLGA8AA7E2F4 631 aa10.22□□□□□ -0.77
VCAN-208ENST00000512590 GOLGA8BA8MQT2 603 aa10.22□□□□□ -0.77
VCAN-208ENST00000512590 NASPP49321 788 aaPredicted RBP10.22□□□□□ -0.77
VCAN-208ENST00000512590 CCDC125Q86Z20 511 aa10.22□□□□□ -0.77
VCAN-208ENST00000512590 PRAM1Q96QH2 718 aa10.22□□□□□ -0.77
VCAN-208ENST00000512590 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.22□□□□□ -0.77
VCAN-208ENST00000512590 APAF1O14727 1248 aa10.22□□□□□ -0.77
VCAN-208ENST00000512590 LARGE2Q8N3Y3 721 aa10.22□□□□□ -0.77
VCAN-208ENST00000512590 LEO1Q8WVC0 666 aaPredicted RBP10.22□□□□□ -0.77
VCAN-208ENST00000512590 CFAP36Q96G28 342 aa10.22□□□□□ -0.77
VCAN-208ENST00000512590 RIOK1Q9BRS2 568 aaKnown RBP10.22□□□□□ -0.77
VCAN-208ENST00000512590 CABP1Q9NZU7 370 aa10.22□□□□□ -0.77
VCAN-208ENST00000512590 MXRA7P84157 204 aa10.22□□□□□ -0.77
VCAN-208ENST00000512590 RBM46Q8TBY0 533 aaKnown RBP10.22□□□□□ -0.77
VCAN-208ENST00000512590 NLRP3Q96P20 1036 aa10.22□□□□□ -0.77
VCAN-208ENST00000512590 MAK16Q9BXY0 300 aaKnown RBP10.22□□□□□ -0.77
VCAN-208ENST00000512590 DYNC1I1O14576 645 aa10.21□□□□□ -0.77
VCAN-208ENST00000512590 EEF2P13639 858 aaKnown RBP10.21□□□□□ -0.77
VCAN-208ENST00000512590 ERCC5P28715 1186 aaPredicted RBP10.21□□□□□ -0.77
VCAN-208ENST00000512590 ZNF449Q6P9G9 518 aa10.21□□□□□ -0.77
VCAN-208ENST00000512590 KIF9Q9HAQ2 790 aa10.21□□□□□ -0.77
VCAN-208ENST00000512590 GIPC1O14908 333 aa10.21□□□□□ -0.77
VCAN-208ENST00000512590 DDB1Q16531 1140 aa10.21□□□□□ -0.77
VCAN-208ENST00000512590 ABI1Q8IZP0 508 aa10.21□□□□□ -0.77
VCAN-208ENST00000512590 GABPB2Q8TAK5 448 aaPredicted RBP10.21□□□□□ -0.77
VCAN-208ENST00000512590 N4BP2L2Q92802 583 aaPredicted RBP10.21□□□□□ -0.77
VCAN-208ENST00000512590 CCT4P50991 539 aaKnown RBP10.21□□□□□ -0.78
VCAN-208ENST00000512590 C4orf50Q6ZRC1 276 aa10.21□□□□□ -0.78
VCAN-208ENST00000512590 KIFC2Q96AC6 838 aa10.21□□□□□ -0.78
VCAN-208ENST00000512590 NUP62CLQ9H1M0 184 aa10.21□□□□□ -0.78
VCAN-208ENST00000512590 MAP3K7O43318 606 aa10.21□□□□□ -0.78
VCAN-208ENST00000512590 APBA3O96018 575 aa10.2□□□□□ -0.78
VCAN-208ENST00000512590 SSRP1Q08945 709 aaKnown RBP10.2□□□□□ -0.78
VCAN-208ENST00000512590 NIM1KQ8IY84 436 aa10.2□□□□□ -0.78
VCAN-208ENST00000512590 CHMP6Q96FZ7 201 aa10.2□□□□□ -0.78
VCAN-208ENST00000512590 PNMA2Q9UL42 364 aa10.2□□□□□ -0.78
VCAN-208ENST00000512590 ZEB2O60315 1214 aa10.2□□□□□ -0.78
VCAN-208ENST00000512590 HARSP12081 509 aaKnown RBP10.2□□□□□ -0.78
VCAN-208ENST00000512590 PLVAPQ9BX97 442 aa10.2□□□□□ -0.78
VCAN-208ENST00000512590 H0YIN7 160 aa10.2□□□□□ -0.78
VCAN-208ENST00000512590 WDR63Q8IWG1 891 aa10.2□□□□□ -0.78
VCAN-208ENST00000512590 MYBBP1AQ9BQG0 1328 aaKnown RBP10.2□□□□□ -0.78
VCAN-208ENST00000512590 RBM25P49756 843 aaKnown RBP10.2□□□□□ -0.78
VCAN-208ENST00000512590 KIF4BQ2VIQ3 1234 aa10.2□□□□□ -0.78
VCAN-208ENST00000512590 MUM1L1Q5H9M0 696 aa10.2□□□□□ -0.78
VCAN-208ENST00000512590 RPUSD2Q8IZ73 545 aaKnown RBP10.2□□□□□ -0.78
VCAN-208ENST00000512590 A0A1W2PRG0 241 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 138.8 ms