RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 CWC25Q9NXE8 425 aaPredicted RBP37.55■■■■□ 3.6
LIMCH1-211ENST00000509638 NTSR2O95665 410 aa37.54■■■■□ 3.6
LIMCH1-211ENST00000509638 PPP1R42Q7Z4L9 355 aa37.54■■■■□ 3.6
LIMCH1-211ENST00000509638 KIF13BQ9NQT8 1826 aa37.54■■■■□ 3.6
LIMCH1-211ENST00000509638 NPHP1O15259 732 aa37.53■■■■□ 3.6
LIMCH1-211ENST00000509638 PLIN1O60240 522 aa37.53■■■■□ 3.6
LIMCH1-211ENST00000509638 ANKRD31Q8N7Z5 1873 aa37.53■■■■□ 3.6
LIMCH1-211ENST00000509638 LAMB2P55268 1798 aa37.52■■■■□ 3.6
LIMCH1-211ENST00000509638 SRCIN1Q9C0H9 1055 aa37.52■■■■□ 3.6
LIMCH1-211ENST00000509638 NYXQ9GZU5 481 aa37.52■■■■□ 3.6
LIMCH1-211ENST00000509638 C10orf71Q711Q0 1435 aa37.52■■■■□ 3.6
LIMCH1-211ENST00000509638 PRR5LQ6MZQ0 368 aa37.51■■■■□ 3.6
LIMCH1-211ENST00000509638 UTP14AQ9BVJ6 771 aaKnown RBP37.51■■■■□ 3.6
LIMCH1-211ENST00000509638 FTSJ3Q8IY81 847 aaKnown RBP37.51■■■■□ 3.59
LIMCH1-211ENST00000509638 DDX60Q8IY21 1712 aaKnown RBP37.5■■■■□ 3.59
LIMCH1-211ENST00000509638 TPTE2Q6XPS3 522 aa37.5■■■■□ 3.59
LIMCH1-211ENST00000509638 NUTM1Q86Y26 1132 aa37.5■■■■□ 3.59
LIMCH1-211ENST00000509638 TRMT112Q9UI30 125 aaKnown RBP37.5■■■■□ 3.59
LIMCH1-211ENST00000509638 TNRC6CQ9HCJ0 1690 aaKnown RBP37.5■■■■□ 3.59
LIMCH1-211ENST00000509638 ABCC12Q96J65 1359 aa37.49■■■■□ 3.59
LIMCH1-211ENST00000509638 GOLGA6L2Q8N9W4 650 aaPredicted RBP37.49■■■■□ 3.59
LIMCH1-211ENST00000509638 RNF123Q5XPI4 1314 aa37.48■■■■□ 3.59
LIMCH1-211ENST00000509638 ALDH1L1O75891 902 aa37.48■■■■□ 3.59
LIMCH1-211ENST00000509638 CCT4P50991 539 aaKnown RBP37.48■■■■□ 3.59
LIMCH1-211ENST00000509638 GCKRQ14397 625 aa37.48■■■■□ 3.59
LIMCH1-211ENST00000509638 CCDC24Q8N4L8 307 aa37.48■■■■□ 3.59
LIMCH1-211ENST00000509638 GTF2E1P29083 439 aaPredicted RBP37.47■■■■□ 3.59
LIMCH1-211ENST00000509638 DZIP1LQ8IYY4 767 aaKnown RBP37.47■■■■□ 3.59
LIMCH1-211ENST00000509638 ST5P78524 1137 aa37.46■■■■□ 3.59
LIMCH1-211ENST00000509638 SH3TC1Q8TE82 1336 aa37.46■■■■□ 3.59
LIMCH1-211ENST00000509638 RLBP1P12271 317 aa37.46■■■■□ 3.59
LIMCH1-211ENST00000509638 RRP1P56182 461 aaKnown RBP37.46■■■■□ 3.59
LIMCH1-211ENST00000509638 ERFEQ4G0M1 354 aa37.45■■■■□ 3.59
LIMCH1-211ENST00000509638 RTL5Q5HYW3 569 aaPredicted RBP37.45■■■■□ 3.59
LIMCH1-211ENST00000509638 ZBTB38Q8NAP3 1195 aaPredicted RBP37.45■■■■□ 3.59
LIMCH1-211ENST00000509638 FAM89AQ96GI7 184 aa37.45■■■■□ 3.59
LIMCH1-211ENST00000509638 PPP1R1BQ9UD71 204 aaPredicted RBP37.45■■■■□ 3.59
LIMCH1-211ENST00000509638 INTS3Q68E01 1043 aaKnown RBP37.43■■■■□ 3.58
LIMCH1-211ENST00000509638 SYNE4Q8N205 404 aa37.43■■■■□ 3.58
LIMCH1-211ENST00000509638 TMEM57Q8N5G2 664 aa37.43■■■■□ 3.58
LIMCH1-211ENST00000509638 COL11A2P13942 1736 aaPredicted RBP37.43■■■■□ 3.58
LIMCH1-211ENST00000509638 PCCAP05165 728 aaPredicted RBP37.42■■■■□ 3.58
LIMCH1-211ENST00000509638 PANK1Q8TE04 598 aa37.42■■■■□ 3.58
LIMCH1-211ENST00000509638 RIC1Q4ADV7 1423 aa37.42■■■■□ 3.58
LIMCH1-211ENST00000509638 UBE3BQ7Z3V4 1068 aa37.42■■■■□ 3.58
LIMCH1-211ENST00000509638 KLHL34Q8N239 644 aa37.42■■■■□ 3.58
LIMCH1-211ENST00000509638 JARID2Q92833 1246 aaPredicted RBP37.42■■■■□ 3.58
LIMCH1-211ENST00000509638 MYH3P11055 1940 aa37.41■■■■□ 3.58
LIMCH1-211ENST00000509638 KIAA1551Q9HCM1 1747 aa37.41■■■■□ 3.58
LIMCH1-211ENST00000509638 GRM8O00222 908 aa37.4■■■■□ 3.58
LIMCH1-211ENST00000509638 MS4A1P11836 297 aa37.4■■■■□ 3.58
LIMCH1-211ENST00000509638 C9orf78Q9NZ63 289 aaPredicted RBP37.39■■■■□ 3.58
LIMCH1-211ENST00000509638 C20orf194Q5TEA3 1177 aa37.38■■■■□ 3.57
LIMCH1-211ENST00000509638 GOLGB1Q14789 3259 aaKnown RBP37.37■■■■□ 3.57
LIMCH1-211ENST00000509638 ITPRIPQ8IWB1 547 aa37.37■■■■□ 3.57
LIMCH1-211ENST00000509638 DLEC1Q9Y238 1755 aa37.37■■■■□ 3.57
LIMCH1-211ENST00000509638 CDHR2Q9BYE9 1310 aa37.36■■■■□ 3.57
LIMCH1-211ENST00000509638 H7C1W4 665 aa37.36■■■■□ 3.57
LIMCH1-211ENST00000509638 CENPBP07199 599 aaPredicted RBP37.36■■■■□ 3.57
LIMCH1-211ENST00000509638 HCLS1P14317 486 aaPredicted RBP37.36■■■■□ 3.57
LIMCH1-211ENST00000509638 BRIP1Q9BX63 1249 aa37.36■■■■□ 3.57
LIMCH1-211ENST00000509638 IRS4O14654 1257 aaPredicted RBP37.35■■■■□ 3.57
LIMCH1-211ENST00000509638 SUPT16HQ9Y5B9 1047 aaKnown RBP37.35■■■■□ 3.57
LIMCH1-211ENST00000509638 CASP7P55210 303 aa37.34■■■■□ 3.57
LIMCH1-211ENST00000509638 PDE3AQ14432 1141 aa37.34■■■■□ 3.57
LIMCH1-211ENST00000509638 FHDC1Q9C0D6 1143 aaPredicted RBP37.34■■■■□ 3.57
LIMCH1-211ENST00000509638 CD2APQ9Y5K6 639 aa37.34■■■■□ 3.57
LIMCH1-211ENST00000509638 USP44Q9H0E7 712 aa37.34■■■■□ 3.57
LIMCH1-211ENST00000509638 UTYO14607 1347 aa37.33■■■■□ 3.57
LIMCH1-211ENST00000509638 NBPF7P0C2Y1 421 aaPredicted RBP37.33■■■■□ 3.57
LIMCH1-211ENST00000509638 SLC10A5Q5PT55 438 aa37.33■■■■□ 3.57
LIMCH1-211ENST00000509638 PDE6BP35913 854 aa37.3■■■■□ 3.56
LIMCH1-211ENST00000509638 C3orf67Q6ZVT6 689 aa37.3■■■■□ 3.56
LIMCH1-211ENST00000509638 MEIS3Q99687 375 aa37.3■■■■□ 3.56
LIMCH1-211ENST00000509638 COG6Q9Y2V7 657 aa37.29■■■■□ 3.56
LIMCH1-211ENST00000509638 HSP90B1P14625 803 aaKnown RBP37.29■■■■□ 3.56
LIMCH1-211ENST00000509638 MVPQ14764 893 aaKnown RBP37.29■■■■□ 3.56
LIMCH1-211ENST00000509638 BRCA1P38398 1863 aaKnown RBP37.28■■■■□ 3.56
LIMCH1-211ENST00000509638 CACNA1SQ13698 1873 aa37.28■■■■□ 3.56
LIMCH1-211ENST00000509638 NLRP3Q96P20 1036 aa37.27■■■■□ 3.56
LIMCH1-211ENST00000509638 UBTFL1P0CB47 393 aaPredicted RBP37.26■■■■□ 3.56
LIMCH1-211ENST00000509638 NLGN2Q8NFZ4 835 aa37.26■■■■□ 3.56
LIMCH1-211ENST00000509638 KLRG2A4D1S0 409 aaPredicted RBP37.25■■■■□ 3.55
LIMCH1-211ENST00000509638 PDE8AO60658 829 aa37.25■■■■□ 3.55
LIMCH1-211ENST00000509638 CHRNA5P30532 468 aa37.25■■■■□ 3.55
LIMCH1-211ENST00000509638 SUCLG2Q96I99 432 aa37.25■■■■□ 3.55
LIMCH1-211ENST00000509638 CRY2Q49AN0 593 aa37.25■■■■□ 3.55
LIMCH1-211ENST00000509638 C2CD5Q86YS7 1000 aa37.25■■■■□ 3.55
LIMCH1-211ENST00000509638 CTSWP56202 376 aa37.24■■■■□ 3.55
LIMCH1-211ENST00000509638 TGFB2P61812 414 aa37.24■■■■□ 3.55
LIMCH1-211ENST00000509638 PLA2G12BQ9BX93 195 aa37.24■■■■□ 3.55
LIMCH1-211ENST00000509638 SYT17Q9BSW7 474 aa37.23■■■■□ 3.55
LIMCH1-211ENST00000509638 GNAI3P08754 354 aa37.22■■■■□ 3.55
LIMCH1-211ENST00000509638 A0A0G2JLW4 131 aa37.21■■■■□ 3.55
LIMCH1-211ENST00000509638 H0YIN7 160 aa37.21■■■■□ 3.55
LIMCH1-211ENST00000509638 DPEP1P16444 411 aa37.21■■■■□ 3.55
LIMCH1-211ENST00000509638 DDX19BQ9UMR2 479 aa37.21■■■■□ 3.55
LIMCH1-211ENST00000509638 PDZRN3Q9UPQ7 1066 aa37.21■■■■□ 3.55
LIMCH1-211ENST00000509638 TAF1P21675 1872 aa37.21■■■■□ 3.55
LIMCH1-211ENST00000509638 SRGNP10124 158 aa37.21■■■■□ 3.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms