RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 C20orf204Q6ZNR8 217 aa6.79□□□□□ -1.32
NUP54-208ENST00000508604 TSEN2Q8NCE0 465 aaKnown RBP6.79□□□□□ -1.32
NUP54-208ENST00000508604 ZNF280CQ8ND82 737 aa6.79□□□□□ -1.32
NUP54-208ENST00000508604 ZNF594Q96JF6 807 aaPredicted RBP6.79□□□□□ -1.32
NUP54-208ENST00000508604 PSMG3-AS1Q96PY0 264 aa6.79□□□□□ -1.32
NUP54-208ENST00000508604 ATAD2Q6PL18 1390 aa6.78□□□□□ -1.32
NUP54-208ENST00000508604 POTEAQ6S8J7 498 aa6.78□□□□□ -1.32
NUP54-208ENST00000508604 BTLAQ7Z6A9 289 aa6.78□□□□□ -1.32
NUP54-208ENST00000508604 SIX5Q8N196 739 aa6.78□□□□□ -1.32
NUP54-208ENST00000508604 CHMP7Q8WUX9 453 aaPredicted RBP6.78□□□□□ -1.32
NUP54-208ENST00000508604 SLC6A14Q9UN76 642 aa6.78□□□□□ -1.32
NUP54-208ENST00000508604 POM121CA8CG34 1229 aa6.77□□□□□ -1.32
NUP54-208ENST00000508604 PCSK7Q16549 785 aa6.77□□□□□ -1.32
NUP54-208ENST00000508604 NBPF11Q86T75 865 aa6.77□□□□□ -1.32
NUP54-208ENST00000508604 STAG2Q8N3U4 1231 aa6.77□□□□□ -1.32
NUP54-208ENST00000508604 NUDT8Q8WV74 236 aa6.77□□□□□ -1.32
NUP54-208ENST00000508604 NGLY1Q96IV0 654 aa6.77□□□□□ -1.32
NUP54-208ENST00000508604 ZFP64Q9NPA5 681 aa6.77□□□□□ -1.32
NUP54-208ENST00000508604 A0A0A0MRY4 1105 aa6.77□□□□□ -1.33
NUP54-208ENST00000508604 EPB42P16452 691 aa6.77□□□□□ -1.33
NUP54-208ENST00000508604 PRSS36Q5K4E3 855 aa6.77□□□□□ -1.33
NUP54-208ENST00000508604 SCG3Q8WXD2 468 aaKnown RBP6.77□□□□□ -1.33
NUP54-208ENST00000508604 RGS9O75916 674 aaPredicted RBP6.76□□□□□ -1.33
NUP54-208ENST00000508604 RASA1P20936 1047 aa6.76□□□□□ -1.33
NUP54-208ENST00000508604 SEC13P55735 322 aa6.76□□□□□ -1.33
NUP54-208ENST00000508604 ADGRE1Q14246 886 aa6.76□□□□□ -1.33
NUP54-208ENST00000508604 TXNRD3Q86VQ6 643 aa6.76□□□□□ -1.33
NUP54-208ENST00000508604 LENG1Q96BZ8 264 aaPredicted RBP6.76□□□□□ -1.33
NUP54-208ENST00000508604 USP21Q9UK80 565 aa6.76□□□□□ -1.33
NUP54-208ENST00000508604 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.76□□□□□ -1.33
NUP54-208ENST00000508604 H2AFB1P0C5Y9 115 aa6.75□□□□□ -1.33
NUP54-208ENST00000508604 H2AFB2P0C5Z0 115 aa6.75□□□□□ -1.33
NUP54-208ENST00000508604 CCINQ13939 588 aa6.75□□□□□ -1.33
NUP54-208ENST00000508604 PSAPL1Q6NUJ1 521 aa6.75□□□□□ -1.33
NUP54-208ENST00000508604 LARP1Q6PKG0 1096 aaKnown RBP6.75□□□□□ -1.33
NUP54-208ENST00000508604 ADAMTS19Q8TE59 1207 aa6.75□□□□□ -1.33
NUP54-208ENST00000508604 UCN2Q96RP3 112 aa6.75□□□□□ -1.33
NUP54-208ENST00000508604 C2orf49Q9BVC5 232 aaPredicted RBP6.75□□□□□ -1.33
NUP54-208ENST00000508604 KRTAP4-8Q9BYQ9 185 aa6.75□□□□□ -1.33
NUP54-208ENST00000508604 DNAJB12Q9NXW2 375 aaKnown RBP6.75□□□□□ -1.33
NUP54-208ENST00000508604 MBTPS1Q14703 1052 aa6.74□□□□□ -1.33
NUP54-208ENST00000508604 ARTNQ5T4W7 220 aa6.74□□□□□ -1.33
NUP54-208ENST00000508604 IER5Q5VY09 327 aa6.74□□□□□ -1.33
NUP54-208ENST00000508604 HINFPQ9BQA5 517 aa6.74□□□□□ -1.33
NUP54-208ENST00000508604 SELPP16109 830 aa6.74□□□□□ -1.33
NUP54-208ENST00000508604 RTN1Q16799 776 aa6.74□□□□□ -1.33
NUP54-208ENST00000508604 TGFBR3LH3BV60 316 aa6.73□□□□□ -1.33
NUP54-208ENST00000508604 C21orf2O43822 256 aa6.73□□□□□ -1.33
NUP54-208ENST00000508604 TP53INP1Q96A56 240 aa6.73□□□□□ -1.33
NUP54-208ENST00000508604 GSX2Q9BZM3 304 aa6.73□□□□□ -1.33
NUP54-208ENST00000508604 NFKB1P19838 968 aa6.72□□□□□ -1.33
NUP54-208ENST00000508604 ARID4AP29374 1257 aaPredicted RBP6.72□□□□□ -1.33
NUP54-208ENST00000508604 AFF1P51825 1210 aaKnown RBP6.72□□□□□ -1.33
NUP54-208ENST00000508604 DMRTC2Q8IXT2 367 aaPredicted RBP6.72□□□□□ -1.33
NUP54-208ENST00000508604 FMR1NBQ8N0W7 255 aaPredicted RBP6.72□□□□□ -1.33
NUP54-208ENST00000508604 FAM35AQ86V20 835 aa6.71□□□□□ -1.33
NUP54-208ENST00000508604 FOXD4L6Q3SYB3 417 aaPredicted RBP6.71□□□□□ -1.34
NUP54-208ENST00000508604 MSL1Q68DK7 614 aa6.71□□□□□ -1.34
NUP54-208ENST00000508604 SHISA2Q6UWI4 295 aa6.71□□□□□ -1.34
NUP54-208ENST00000508604 FOXD4L3Q6VB84 417 aaPredicted RBP6.71□□□□□ -1.34
NUP54-208ENST00000508604 DTWD1Q8N5C7 304 aa6.71□□□□□ -1.34
NUP54-208ENST00000508604 TFIP11Q9UBB9 837 aaKnown RBP6.71□□□□□ -1.34
NUP54-208ENST00000508604 CPB1P15086 417 aa6.7□□□□□ -1.34
NUP54-208ENST00000508604 ELMSAN1Q6PJG2 1045 aa6.7□□□□□ -1.34
NUP54-208ENST00000508604 VTI1AQ96AJ9 217 aa6.7□□□□□ -1.34
NUP54-208ENST00000508604 FRRS1LQ9P0K9 344 aa6.7□□□□□ -1.34
NUP54-208ENST00000508604 DKK1O94907 266 aa6.69□□□□□ -1.34
NUP54-208ENST00000508604 IGFBP4P22692 258 aa6.69□□□□□ -1.34
NUP54-208ENST00000508604 LRP8Q14114 963 aa6.69□□□□□ -1.34
NUP54-208ENST00000508604 WFDC8Q8IUA0 241 aa6.69□□□□□ -1.34
NUP54-208ENST00000508604 GLMNQ92990 594 aa6.69□□□□□ -1.34
NUP54-208ENST00000508604 MAP3K6O95382 1288 aa6.68□□□□□ -1.34
NUP54-208ENST00000508604 C11orf16Q9NQ32 467 aa6.68□□□□□ -1.34
NUP54-208ENST00000508604 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.68□□□□□ -1.34
NUP54-208ENST00000508604 NAGPAQ9UK23 515 aa6.68□□□□□ -1.34
NUP54-208ENST00000508604 MAFBQ9Y5Q3 323 aaPredicted RBP6.68□□□□□ -1.34
NUP54-208ENST00000508604 IDH3AP50213 366 aa6.68□□□□□ -1.34
NUP54-208ENST00000508604 ARSDP51689 593 aa6.68□□□□□ -1.34
NUP54-208ENST00000508604 KRT25Q7Z3Z0 450 aa6.68□□□□□ -1.34
NUP54-208ENST00000508604 RARAP10276 462 aa6.67□□□□□ -1.34
NUP54-208ENST00000508604 DPYDQ12882 1025 aa6.67□□□□□ -1.34
NUP54-208ENST00000508604 DHX32Q7L7V1 743 aaKnown RBP6.67□□□□□ -1.34
NUP54-208ENST00000508604 FBXO11Q86XK2 927 aa6.67□□□□□ -1.34
NUP54-208ENST00000508604 DMGDHQ9UI17 866 aaKnown RBP6.67□□□□□ -1.34
NUP54-208ENST00000508604 DGKZQ13574 1117 aa6.66□□□□□ -1.34
NUP54-208ENST00000508604 IGF2-ASQ6U949 168 aa6.66□□□□□ -1.34
NUP54-208ENST00000508604 PROSER2Q86WR7 435 aaPredicted RBP6.66□□□□□ -1.34
NUP54-208ENST00000508604 INPP5BP32019 993 aa6.65□□□□□ -1.34
NUP54-208ENST00000508604 PTK7Q13308 1070 aa6.65□□□□□ -1.34
NUP54-208ENST00000508604 PERM1Q5SV97 790 aa6.65□□□□□ -1.34
NUP54-208ENST00000508604 ANKMY2Q8IV38 441 aa6.65□□□□□ -1.34
NUP54-208ENST00000508604 TRPM4Q8TD43 1214 aa6.65□□□□□ -1.34
NUP54-208ENST00000508604 WFDC12Q8WWY7 111 aa6.65□□□□□ -1.34
NUP54-208ENST00000508604 TTC9Q92623 222 aa6.65□□□□□ -1.34
NUP54-208ENST00000508604 CALR3Q96L12 384 aaKnown RBP6.65□□□□□ -1.34
NUP54-208ENST00000508604 LPIN3Q9BQK8 851 aa6.65□□□□□ -1.34
NUP54-208ENST00000508604 VRTNQ9H8Y1 702 aa6.65□□□□□ -1.34
NUP54-208ENST00000508604 KLK14Q9P0G3 267 aa6.65□□□□□ -1.34
NUP54-208ENST00000508604 BCS1LQ9Y276 419 aa6.65□□□□□ -1.34
NUP54-208ENST00000508604 FAM196BA6NMK8 535 aa6.65□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms